-
1
-
-
84874914744
-
Cyclic di-GMP: the first 25 years of a universal bacterial second messenger
-
Römling U, Galperin MY, Gomelsky M. 2013. Cyclic di-GMP: the first 25 years of a universal bacterial second messenger. Microbiol Mol Biol Rev 77:1-52. http://dx.doi.org/10.1128/MicrobiolMolBiolRev.00043-12.
-
(2013)
Microbiol Mol Biol Rev
, vol.77
, pp. 1-52
-
-
Römling, U.1
Galperin, M.Y.2
Gomelsky, M.3
-
2
-
-
84870208079
-
Second messenger regulation of biofilm formation: breakthroughs in understanding c-di-GMP effector systems
-
Boyd CD, O'Toole GA. 2012. Second messenger regulation of biofilm formation: breakthroughs in understanding c-di-GMP effector systems. Annu Rev Cell Dev Biol 28:439-462. http://dx.doi.org/10.1146/annurev-cellbio-101011-155705.
-
(2012)
Annu Rev Cell Dev Biol
, vol.28
, pp. 439-462
-
-
Boyd, C.D.1
O'Toole, G.A.2
-
3
-
-
84879835990
-
Cyclic di-GMP signalling and the regulation of bacterial virulence
-
Ryan RP. 2013. Cyclic di-GMP signalling and the regulation of bacterial virulence. Microbiology 159:1286-1297. http://dx.doi.org/10.1099/mic.0.068189-0.
-
(2013)
Microbiology
, vol.159
, pp. 1286-1297
-
-
Ryan, R.P.1
-
4
-
-
70349274104
-
Structural and mechanistic determinants of c-di-GMP signalling
-
Schirmer T, Jenal U. 2009. Structural and mechanistic determinants of c-di-GMP signalling. Nat Rev Microbiol 7:724-735. http://dx.doi.org/10.1038/nrmicro2203.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 724-735
-
-
Schirmer, T.1
Jenal, U.2
-
5
-
-
84862527194
-
Sensing the messenger: the diverse ways that bacteria signal through c-di-GMP
-
Krasteva PV, Giglio KM, Sondermann H. 2012. Sensing the messenger: the diverse ways that bacteria signal through c-di-GMP. Protein Sci 21:929-948. http://dx.doi.org/10.1002/pro.2093.
-
(2012)
Protein Sci
, vol.21
, pp. 929-948
-
-
Krasteva, P.V.1
Giglio, K.M.2
Sondermann, H.3
-
6
-
-
0023090935
-
Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid
-
Ross P, Weinhouse H, Aloni Y, Michaeli D, Weinberger-Ohana P, Mayer R, Braun S, de Vroom E, van der Marel GA, van Boom JH, Benziman M. 1987. Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid. Nature 325:279-281.
-
(1987)
Nature
, vol.325
, pp. 279-281
-
-
Ross, P.1
Weinhouse, H.2
Aloni, Y.3
Michaeli, D.4
Weinberger-Ohana, P.5
Mayer, R.6
Braun, S.7
de Vroom, E.8
van der Marel, G.A.9
van Boom, J.H.10
Benziman, M.11
-
7
-
-
84869232784
-
Description of Komagataeibacter gen. nov., with proposals of new combinations (Acetobacteraceae)
-
Yamada Y, Yukphan P, Lan Vu HT, Muramatsu Y, Ochaikul D, Tanasupawat S, Nakagawa Y. 2012. Description of Komagataeibacter gen. nov., with proposals of new combinations (Acetobacteraceae). J Gen Appl Microbiol 58:397-404. http://dx.doi.org/10.2323/jgam.58.397.
-
(2012)
J Gen Appl Microbiol
, vol.58
, pp. 397-404
-
-
Yamada, Y.1
Yukphan, P.2
Lan Vu, H.T.3
Muramatsu, Y.4
Ochaikul, D.5
Tanasupawat, S.6
Nakagawa, Y.7
-
8
-
-
0026093011
-
Cellulose biosynthesis and function in bacteria
-
Ross P, Mayer R, Benziman M. 1991. Cellulose biosynthesis and function in bacteria. Microbiol Rev 55:35-58.
-
(1991)
Microbiol Rev
, vol.55
, pp. 35-58
-
-
Ross, P.1
Mayer, R.2
Benziman, M.3
-
9
-
-
0030734277
-
c-di-GMP-binding protein, a new factor regulating cellulose synthesis in Acetobacter xylinum
-
Weinhouse H, Sapir S, Amikam D, Shilo Y, Volman G, Ohana P, Benziman M. 1997. c-di-GMP-binding protein, a new factor regulating cellulose synthesis in Acetobacter xylinum. FEBS Lett 416:207-211. http://dx.doi.org/10.1016/S0014-5793(97)01202-7.
-
(1997)
FEBS Lett
, vol.416
, pp. 207-211
-
-
Weinhouse, H.1
Sapir, S.2
Amikam, D.3
Shilo, Y.4
Volman, G.5
Ohana, P.6
Benziman, M.7
-
10
-
-
0033222409
-
A specialized version of the HD hydrolase domain implicated in signal transduction
-
Galperin MY, Natale DA, Aravind L, Koonin EV. 1999. A specialized version of the HD hydrolase domain implicated in signal transduction. J Mol Microbiol Biotechnol 1:303-305. http://dx.doi.org/10.1159/issn.1464-1801.
-
(1999)
J Mol Microbiol Biotechnol
, vol.1
, pp. 303-305
-
-
Galperin, M.Y.1
Natale, D.A.2
Aravind, L.3
Koonin, E.V.4
-
11
-
-
0035845587
-
Novel domains of the prokaryotic two-component signal transduction systems
-
Galperin MY, Nikolskaya AN, Koonin EV. 2001. Novel domains of the prokaryotic two-component signal transduction systems. FEMS Microbiol Lett 203:11-21. http://dx.doi.org/10.1111/j.1574-6968.2001.tb10814.x.
-
(2001)
FEMS Microbiol Lett
, vol.203
, pp. 11-21
-
-
Galperin, M.Y.1
Nikolskaya, A.N.2
Koonin, E.V.3
-
12
-
-
10344238965
-
Structural basis of activity and allosteric control of diguanylate cyclase
-
Chan C, Paul R, Samoray D, Amiot NC, Giese B, Jenal U, Schirmer T. 2004. Structural basis of activity and allosteric control of diguanylate cyclase. Proc Natl Acad Sci U S A 101:17084-17089. http://dx.doi.org/10.1073/pnas.0406134101.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 17084-17089
-
-
Chan, C.1
Paul, R.2
Samoray, D.3
Amiot, N.C.4
Giese, B.5
Jenal, U.6
Schirmer, T.7
-
13
-
-
33750441136
-
Allosteric control of cyclic di-GMP signaling
-
Christen B, Christen M, Paul R, Schmid F, Folcher M, Jenoe P, Meuwly M, Jenal U. 2006. Allosteric control of cyclic di-GMP signaling. J Biol Chem 281:32015-32024. http://dx.doi.org/10.1074/jbc.M603589200.
-
(2006)
J Biol Chem
, vol.281
, pp. 32015-32024
-
-
Christen, B.1
Christen, M.2
Paul, R.3
Schmid, F.4
Folcher, M.5
Jenoe, P.6
Meuwly, M.7
Jenal, U.8
-
14
-
-
34548303826
-
A cyclic-di-GMP receptor required for bacterial exopolysaccharide production
-
Lee VT, Matewish JM, Kessler JL, Hyodo M, Hayakawa Y, Lory S. 2007. A cyclic-di-GMP receptor required for bacterial exopolysaccharide production. Mol Microbiol 65:1474-1484. http://dx.doi.org/10.1111/j.1365-2958.2007.05879.x.
-
(2007)
Mol Microbiol
, vol.65
, pp. 1474-1484
-
-
Lee, V.T.1
Matewish, J.M.2
Kessler, J.L.3
Hyodo, M.4
Hayakawa, Y.5
Lory, S.6
-
15
-
-
62549150834
-
LapD is a bis-(3',5')-cyclic dimeric GMP-binding protein that regulates surface attachment by Pseudomonas fluorescens Pf0-1
-
Newell PD, Monds RD, O'Toole GA. 2009. LapD is a bis-(3',5')-cyclic dimeric GMP-binding protein that regulates surface attachment by Pseudomonas fluorescens Pf0-1. Proc Natl Acad Sci U S A 106:3461-3466. http://dx.doi.org/10.1073/pnas.0808933106.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 3461-3466
-
-
Newell, P.D.1
Monds, R.D.2
O'Toole, G.A.3
-
16
-
-
0028810683
-
The novel cyclic dinucleotide 3'-5' cyclic diguanylic acid binds to p21ras and enhances DNA synthesis but not cell replication in the Molt 4 cell line
-
Amikam D, Steinberger O, Shkolnik T, Ben-Ishai Z. 1995. The novel cyclic dinucleotide 3'-5' cyclic diguanylic acid binds to p21ras and enhances DNA synthesis but not cell replication in the Molt 4 cell line. Biochem J 311:921-927. http://dx.doi.org/10.1016/S0014-5793(99)00036-8.
-
(1995)
Biochem J
, vol.311
, pp. 921-927
-
-
Amikam, D.1
Steinberger, O.2
Shkolnik, T.3
Ben-Ishai, Z.4
-
17
-
-
0033044554
-
Elevated expression of the CD4 receptor and cell cycle arrest are induced in Jurkat cells by treatment with the novel cyclic dinucleotide 3',5'-cyclic diguanylic acid
-
Steinberger O, Lapidot Z, Ben-Ishai Z, Amikam D. 1999. Elevated expression of the CD4 receptor and cell cycle arrest are induced in Jurkat cells by treatment with the novel cyclic dinucleotide 3',5'-cyclic diguanylic acid. FEBS Lett 444:125-129. http://dx.doi.org/10.1016/S0014-5793(99)00036-8.
-
(1999)
FEBS Lett
, vol.444
, pp. 125-129
-
-
Steinberger, O.1
Lapidot, Z.2
Ben-Ishai, Z.3
Amikam, D.4
-
18
-
-
30344469912
-
PilZ domain is part of the bacterial c-di-GMP binding protein
-
Amikam D, Galperin MY. 2006. PilZ domain is part of the bacterial c-di-GMP binding protein. Bioinformatics 22:3-6. http://dx.doi.org/10.1093/bioinformatics/bti739.
-
(2006)
Bioinformatics
, vol.22
, pp. 3-6
-
-
Amikam, D.1
Galperin, M.Y.2
-
19
-
-
33750044865
-
The PilZ domain is a receptor for the second messenger c-di-GMP. The PilZ domain protein YcgR controls motility in enterobacteria
-
Ryjenkov DA, Simm R, Römling U, Gomelsky M. 2006. The PilZ domain is a receptor for the second messenger c-di-GMP. The PilZ domain protein YcgR controls motility in enterobacteria. J Biol Chem 281:30310-30314. http://dx.doi.org/10.1074/jbc.C600179200.
-
(2006)
J Biol Chem
, vol.281
, pp. 30310-30314
-
-
Ryjenkov, D.A.1
Simm, R.2
Römling, U.3
Gomelsky, M.4
-
20
-
-
37149042731
-
The structural basis of cyclic diguanylate signal transduction by PilZ domains
-
Benach J, Swaminathan SS, Tamayo R, Handelman SK, Folta-Stogniew E, Ramos JE, Forouhar F, Neely H, Seetharaman J, Camilli A, Hunt JF. 2007. The structural basis of cyclic diguanylate signal transduction by PilZ domains. EMBO J 26:5153-5166. http://dx.doi.org/10.1038/sj.emboj.7601918.
-
(2007)
EMBO J
, vol.26
, pp. 5153-5166
-
-
Benach, J.1
Swaminathan, S.S.2
Tamayo, R.3
Handelman, S.K.4
Folta-Stogniew, E.5
Ramos, J.E.6
Forouhar, F.7
Neely, H.8
Seetharaman, J.9
Camilli, A.10
Hunt, J.F.11
-
21
-
-
34247213819
-
DgrA is a member of a new family of cyclic diguanosine monophosphate receptors and controls flagellar motor function in Caulobacter crescentus
-
Christen M, Christen B, Allan MG, Folcher M, Jeno P, Grzesiek S, Jenal U. 2007. DgrA is a member of a new family of cyclic diguanosine monophosphate receptors and controls flagellar motor function in Caulobacter crescentus. Proc Natl Acad Sci U S A 104:4112-4117. http://dx.doi.org/10.1073/pnas.0607738104.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 4112-4117
-
-
Christen, M.1
Christen, B.2
Allan, M.G.3
Folcher, M.4
Jeno, P.5
Grzesiek, S.6
Jenal, U.7
-
22
-
-
34250358327
-
PilZ domain proteins bind cyclic diguanylate and regulate diverse processes in Vibrio cholerae
-
Pratt JT, Tamayo R, Tischler AD, Camilli A. 2007. PilZ domain proteins bind cyclic diguanylate and regulate diverse processes in Vibrio cholerae. J Biol Chem 282:12860-12870. http://dx.doi.org/10.1074/jbc.M611593200.
-
(2007)
J Biol Chem
, vol.282
, pp. 12860-12870
-
-
Pratt, J.T.1
Tamayo, R.2
Tischler, A.D.3
Camilli, A.4
-
23
-
-
33846006935
-
NMR structure and binding studies confirm that PA4608 from Pseudomonas aeruginosa is a PilZ domain and a c-di-GMP binding protein
-
Ramelot TA, Yee A, Cort JR, Semesi A, Arrowsmith CH, Kennedy MA. 2007. NMR structure and binding studies confirm that PA4608 from Pseudomonas aeruginosa is a PilZ domain and a c-di-GMP binding protein. Proteins 66:266-271. http://dx.doi.org/10.1002/prot.21199.
-
(2007)
Proteins
, vol.66
, pp. 266-271
-
-
Ramelot, T.A.1
Yee, A.2
Cort, J.R.3
Semesi, A.4
Arrowsmith, C.H.5
Kennedy, M.A.6
-
24
-
-
23944523895
-
A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts
-
Galperin MY. 2005. A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts. BMC Microbiol 5:35. http://dx.doi.org/10.1186/1471-2180-5-35.
-
(2005)
BMC Microbiol
, vol.5
, pp. 35
-
-
Galperin, M.Y.1
-
25
-
-
63449138218
-
The Anaplasma phagocytophilum PleC histidine kinase and PleD diguanylate cyclase two-component system and role of cyclic Di-GMP in host cell infection
-
Lai TH, Kumagai Y, Hyodo M, Hayakawa Y, Rikihisa Y. 2009. The Anaplasma phagocytophilum PleC histidine kinase and PleD diguanylate cyclase two-component system and role of cyclic Di-GMP in host cell infection. J Bacteriol 191:693-700. http://dx.doi.org/10.1128/JB.01218-08.
-
(2009)
J Bacteriol
, vol.191
, pp. 693-700
-
-
Lai, T.H.1
Kumagai, Y.2
Hyodo, M.3
Hayakawa, Y.4
Rikihisa, Y.5
-
26
-
-
66149087307
-
XC1028 from Xanthomonas campestris adopts a PilZ domain-like structure without a c-di-GMP switch
-
Li TN, Chin KH, Liu JH, Wang AH, Chou SH. 2009. XC1028 from Xanthomonas campestris adopts a PilZ domain-like structure without a c-di-GMP switch. Proteins 75:282-288. http://dx.doi.org/10.1002/prot.22330.
-
(2009)
Proteins
, vol.75
, pp. 282-288
-
-
Li, T.N.1
Chin, K.H.2
Liu, J.H.3
Wang, A.H.4
Chou, S.H.5
-
27
-
-
84866702967
-
Structural polymorphism of c-di-GMP bound to an EAL domain and in complex with a type II PilZ-domain protein
-
Chin KH, Kuo WT, Yu YJ, Liao YT, Yang MT, Chou SH. 2012. Structural polymorphism of c-di-GMP bound to an EAL domain and in complex with a type II PilZ-domain protein. Acta Crystallogr D Biol Crystallogr 68:1380-1392. http://dx.doi.org/10.1107/S0907444912030594.
-
(2012)
Acta Crystallogr D Biol Crystallogr
, vol.68
, pp. 1380-1392
-
-
Chin, K.H.1
Kuo, W.T.2
Yu, Y.J.3
Liao, Y.T.4
Yang, M.T.5
Chou, S.H.6
-
28
-
-
84878261687
-
Structure of the PilZ-FimXEAL-c-di-GMP complex responsible for the regulation of bacterial type IV pilus biogenesis
-
Guzzo CR, Dunger G, Salinas RK, Farah CS. 2013. Structure of the PilZ-FimXEAL-c-di-GMP complex responsible for the regulation of bacterial type IV pilus biogenesis. J Mol Biol 425:2174-2197. http://dx.doi.org/10.1016/j.jmb.2013.03.021.
-
(2013)
J Mol Biol
, vol.425
, pp. 2174-2197
-
-
Guzzo, C.R.1
Dunger, G.2
Salinas, R.K.3
Farah, C.S.4
-
29
-
-
79960053518
-
A novel tetrameric PilZ domain structure from xanthomonads
-
Li TN, Chin KH, Fung KM, Yang MT, Wang AH, Chou SH. 2011. A novel tetrameric PilZ domain structure from xanthomonads. PLoS One 6:e22036. http://dx.doi.org/10.1371/journal.pone.0022036.
-
(2011)
PLoS One
, vol.6
-
-
Li, T.N.1
Chin, K.H.2
Fung, K.M.3
Yang, M.T.4
Wang, A.H.5
Chou, S.H.6
-
30
-
-
77955630859
-
An allosteric self-splicing ribozyme triggered by a bacterial second messenger
-
Lee ER, Baker JL, Weinberg Z, Sudarsan N, Breaker RR. 2010. An allosteric self-splicing ribozyme triggered by a bacterial second messenger. Science 329:845-848. http://dx.doi.org/10.1126/science.1190713.
-
(2010)
Science
, vol.329
, pp. 845-848
-
-
Lee, E.R.1
Baker, J.L.2
Weinberg, Z.3
Sudarsan, N.4
Breaker, R.R.5
-
31
-
-
47749152941
-
Riboswitches in eubacteria sense the second messenger cyclic di-GMP
-
Sudarsan N, Lee ER, Weinberg Z, Moy RH, Kim JN, Link KH, Breaker RR. 2008. Riboswitches in eubacteria sense the second messenger cyclic di-GMP. Science 321:411-413. http://dx.doi.org/10.1126/science.1159519.
-
(2008)
Science
, vol.321
, pp. 411-413
-
-
Sudarsan, N.1
Lee, E.R.2
Weinberg, Z.3
Moy, R.H.4
Kim, J.N.5
Link, K.H.6
Breaker, R.R.7
-
32
-
-
0035010211
-
Geometric nomenclature and classification of RNA base pairs
-
Leontis NB, Westhof E. 2001. Geometric nomenclature and classification of RNA base pairs. RNA 7:499-512. http://dx.doi.org/10.1017/S1355838201002515.
-
(2001)
RNA
, vol.7
, pp. 499-512
-
-
Leontis, N.B.1
Westhof, E.2
-
33
-
-
84907308411
-
Tetrameric c-di-GMP mediates effective transcription factor dimerization to control Streptomyces development
-
Tschowri N, Schumacher MA, Schlimpert S, Chinnam NB, Findlay KC, Brennan RG, Buttner MJ. 2014. Tetrameric c-di-GMP mediates effective transcription factor dimerization to control Streptomyces development. Cell 158:1136-1147. http://dx.doi.org/10.1016/j.cell.2014.07.022.
-
(2014)
Cell
, vol.158
, pp. 1136-1147
-
-
Tschowri, N.1
Schumacher, M.A.2
Schlimpert, S.3
Chinnam, N.B.4
Findlay, K.C.5
Brennan, R.G.6
Buttner, M.J.7
-
34
-
-
84946045336
-
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education
-
Rose PW, Prlic A, Bi C, Bluhm WF, Christie CH, Dutta S, Green RK, Goodsell DS, Westbrook JD, Woo J, Young J, Zardecki C, Berman HM, Bourne PE, Burley SK. 2015. The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. Nucleic Acids Res 43:D345-356. http://dx.doi.org/10.1093/nar/gku1214.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D345-D356
-
-
Rose, P.W.1
Prlic, A.2
Bi, C.3
Bluhm, W.F.4
Christie, C.H.5
Dutta, S.6
Green, R.K.7
Goodsell, D.S.8
Westbrook, J.D.9
Woo, J.10
Young, J.11
Zardecki, C.12
Berman, H.M.13
Bourne, P.E.14
Burley, S.K.15
-
35
-
-
84863611012
-
Structure of the cytoplasmic region of PelD, a degenerate diguanylate cyclase receptor that regulates exopolysaccharide production in Pseudomonas aeruginosa
-
Whitney JC, Colvin KM, Marmont LS, Robinson H, Parsek MR, Howell PL. 2012. Structure of the cytoplasmic region of PelD, a degenerate diguanylate cyclase receptor that regulates exopolysaccharide production in Pseudomonas aeruginosa. J Biol Chem 287:23582-23593. http://dx.doi.org/10.1074/jbc.M112.375378.
-
(2012)
J Biol Chem
, vol.287
, pp. 23582-23593
-
-
Whitney, J.C.1
Colvin, K.M.2
Marmont, L.S.3
Robinson, H.4
Parsek, M.R.5
Howell, P.L.6
-
36
-
-
34547659282
-
Structure of BeF3-modified response regulator PleD: implications for diguanylate cyclase activation, catalysis, and feedback inhibition
-
Wassmann P, Chan C, Paul R, Beck A, Heerklotz H, Jenal U, Schirmer T. 2007. Structure of BeF3-modified response regulator PleD: implications for diguanylate cyclase activation, catalysis, and feedback inhibition. Structure 15:915-927. http://dx.doi.org/10.1016/j.str.2007.06.016.
-
(2007)
Structure
, vol.15
, pp. 915-927
-
-
Wassmann, P.1
Chan, C.2
Paul, R.3
Beck, A.4
Heerklotz, H.5
Jenal, U.6
Schirmer, T.7
-
37
-
-
70349783823
-
Determinants for the activation and autoinhibition of the diguanylate cyclase response regulator WspR
-
De N, Navarro MV, Raghavan RV, Sondermann H. 2009. Determinants for the activation and autoinhibition of the diguanylate cyclase response regulator WspR. J Mol Biol 393:619-633. http://dx.doi.org/10.1016/j.jmb.2009.08.030.
-
(2009)
J Mol Biol
, vol.393
, pp. 619-633
-
-
De, N.1
Navarro, M.V.2
Raghavan, R.V.3
Sondermann, H.4
-
38
-
-
41749103519
-
Phosphorylation-independent regulation of the diguanylate cyclase WspR
-
De N, Pirruccello M, Krasteva PV, Bae N, Raghavan RV, Sondermann H. 2008. Phosphorylation-independent regulation of the diguanylate cyclase WspR. PLoS Biol 6:e67. http://dx.doi.org/10.1371/journal.pbio.0060067.
-
(2008)
PLoS Biol
, vol.6
-
-
De, N.1
Pirruccello, M.2
Krasteva, P.V.3
Bae, N.4
Raghavan, R.V.5
Sondermann, H.6
-
39
-
-
84904859048
-
GIL, a new c-di-GMP-binding protein domain involved in regulation of cellulose synthesis in enterobacteria
-
Fang X, Ahmad I, Blanka A, Schottkowski M, Cimdins A, Galperin MY, Römling U, Gomelsky M. 2014. GIL, a new c-di-GMP-binding protein domain involved in regulation of cellulose synthesis in enterobacteria. Mol Microbiol 93:439-452. http://dx.doi.org/10.1111/mmi.12672.
-
(2014)
Mol Microbiol
, vol.93
, pp. 439-452
-
-
Fang, X.1
Ahmad, I.2
Blanka, A.3
Schottkowski, M.4
Cimdins, A.5
Galperin, M.Y.6
Römling, U.7
Gomelsky, M.8
-
40
-
-
84940462046
-
Bacterial cellulose biosynthesis: diversity of operons, subunits, products and functions
-
Römling U, Galperin MY. 2015. Bacterial cellulose biosynthesis: diversity of operons, subunits, products and functions. Trends Microbiol 23:545-557. http://dx.doi.org/10.1016/j.tim.2015.05.005.
-
(2015)
Trends Microbiol
, vol.23
, pp. 545-557
-
-
Römling, U.1
Galperin, M.Y.2
-
41
-
-
67649295467
-
Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase
-
Barends TR, Hartmann E, Griese JJ, Beitlich T, Kirienko NV, Ryjenkov DA, Reinstein J, Shoeman RI, Gomelsky M, Schlichting I. 2009. Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase. Nature 459:1015-1018. http://dx.doi.org/10.1038/nature07966.
-
(2009)
Nature
, vol.459
, pp. 1015-1018
-
-
Barends, T.R.1
Hartmann, E.2
Griese, J.J.3
Beitlich, T.4
Kirienko, N.V.5
Ryjenkov, D.A.6
Reinstein, J.7
Shoeman, R.I.8
Gomelsky, M.9
Schlichting, I.10
-
42
-
-
67649746308
-
Crystal structures of YkuI and its complex with second messenger cyclic di-GMP suggest catalytic mechanism of phosphodiester bond cleavage by EAL domains
-
Minasov G, Padavattan S, Shuvalova L, Brunzelle JS, Miller DJ, Basle A, Massa C, Collart FR, Schirmer T, Anderson WF. 2009. Crystal structures of YkuI and its complex with second messenger cyclic di-GMP suggest catalytic mechanism of phosphodiester bond cleavage by EAL domains. J Biol Chem 284:13174-13184. http://dx.doi.org/10.1074/jbc.M808221200.
-
(2009)
J Biol Chem
, vol.284
, pp. 13174-13184
-
-
Minasov, G.1
Padavattan, S.2
Shuvalova, L.3
Brunzelle, J.S.4
Miller, D.J.5
Basle, A.6
Massa, C.7
Collart, F.R.8
Schirmer, T.9
Anderson, W.F.10
-
43
-
-
77956921553
-
Structural insight into the mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases
-
Tchigvintsev A, Xu X, Singer A, Chang C, Brown G, Proudfoot M, Cui H, Flick R, Anderson WF, Joachimiak A, Galperin MY, Savchenko A, Yakunin AF. 2010. Structural insight into the mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases. J Mol Biol 402:524-538. http://dx.doi.org/10.1016/j.jmb.2010.07.050.
-
(2010)
J Mol Biol
, vol.402
, pp. 524-538
-
-
Tchigvintsev, A.1
Xu, X.2
Singer, A.3
Chang, C.4
Brown, G.5
Proudfoot, M.6
Cui, H.7
Flick, R.8
Anderson, W.F.9
Joachimiak, A.10
Galperin, M.Y.11
Savchenko, A.12
Yakunin, A.F.13
-
44
-
-
68149172669
-
Structural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX
-
Navarro MV, De N, Bae N, Wang Q, Sondermann H. 2009. Structural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX. Structure 17:1104-1116. http://dx.doi.org/10.1016/j.str.2009.06.010.
-
(2009)
Structure
, vol.17
, pp. 1104-1116
-
-
Navarro, M.V.1
De, N.2
Bae, N.3
Wang, Q.4
Sondermann, H.5
-
45
-
-
79952260048
-
Structural basis for c-di-GMP-mediated inside-out signaling controlling periplasmic proteolysis
-
Navarro MV, Newell PD, Krasteva PV, Chatterjee D, Madden DR, O'Toole GA, Sondermann H. 2011. Structural basis for c-di-GMP-mediated inside-out signaling controlling periplasmic proteolysis. PLoS Biol 9:e1000588. http://dx.doi.org/10.1371/journal.pbio.1000588.
-
(2011)
PLoS Biol
, vol.9
-
-
Navarro, M.V.1
Newell, P.D.2
Krasteva, P.V.3
Chatterjee, D.4
Madden, D.R.5
O'Toole, G.A.6
Sondermann, H.7
-
46
-
-
0000445736
-
The structure of a CAP-DNA complex having two cAMP molecules bound to each monomer
-
Passner JM, Steitz TA. 1997. The structure of a CAP-DNA complex having two cAMP molecules bound to each monomer. Proc Natl Acad Sci U S A 94:2843-2847.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 2843-2847
-
-
Passner, J.M.1
Steitz, T.A.2
-
47
-
-
84902080356
-
Mechanism of activation of bacterial cellulose synthase by cyclic di-GMP
-
Morgan JL, McNamara JT, Zimmer J. 2014. Mechanism of activation of bacterial cellulose synthase by cyclic di-GMP. Nat Struct Mol Biol 21:489-496. http://dx.doi.org/10.1038/nsmb.2803.
-
(2014)
Nat Struct Mol Biol
, vol.21
, pp. 489-496
-
-
Morgan, J.L.1
McNamara, J.T.2
Zimmer, J.3
-
48
-
-
84929378451
-
Dimeric c-di-GMP is required for post-translational regulation of alginate production in Pseudomonas aeruginosa
-
Whitney JC, Whitfield GB, Marmont LS, Yip P, Neculai AM, Lobsanov YD, Robinson H, Ohman DE, Howell PL. 2015. Dimeric c-di-GMP is required for post-translational regulation of alginate production in Pseudomonas aeruginosa. J Biol Chem 290:12451-12462. http://dx.doi.org/10.1074/jbc.M115.645051.
-
(2015)
J Biol Chem
, vol.290
, pp. 12451-12462
-
-
Whitney, J.C.1
Whitfield, G.B.2
Marmont, L.S.3
Yip, P.4
Neculai, A.M.5
Lobsanov, Y.D.6
Robinson, H.7
Ohman, D.E.8
Howell, P.L.9
-
49
-
-
77950859347
-
Structure of PP4397 reveals the molecular basis for different c-di-GMP binding modes by PilZ domain proteins
-
Ko J, Ryu KS, Kim H, Shin JS, Lee JO, Cheong C, Choi BS. 2010. Structure of PP4397 reveals the molecular basis for different c-di-GMP binding modes by PilZ domain proteins. J Mol Biol 398:97-110. http://dx.doi.org/10.1016/j.jmb.2010.03.007.
-
(2010)
J Mol Biol
, vol.398
, pp. 97-110
-
-
Ko, J.1
Ryu, K.S.2
Kim, H.3
Shin, J.S.4
Lee, J.O.5
Cheong, C.6
Choi, B.S.7
-
50
-
-
84862996389
-
Cyclic di-GMP sensing via the innate immune signaling protein STING
-
Yin Q, Tian Y, Kabaleeswaran V, Jiang X, Tu D, Eck MJ, Chen ZJ, Wu H. 2012. Cyclic di-GMP sensing via the innate immune signaling protein STING. Mol Cell 46:735-745. http://dx.doi.org/10.1016/j.molcel.2012.05.029.
-
(2012)
Mol Cell
, vol.46
, pp. 735-745
-
-
Yin, Q.1
Tian, Y.2
Kabaleeswaran, V.3
Jiang, X.4
Tu, D.5
Eck, M.J.6
Chen, Z.J.7
Wu, H.8
-
51
-
-
84863726252
-
Structure of STING bound to cyclic di-GMP reveals the mechanism of cyclic dinucleotide recognition by the immune system
-
Shu C, Yi G, Watts T, Kao CC, Li P. 2012. Structure of STING bound to cyclic di-GMP reveals the mechanism of cyclic dinucleotide recognition by the immune system. Nat Struct Mol Biol 19:722-724. http://dx.doi.org/10.1038/nsmb.2331.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 722-724
-
-
Shu, C.1
Yi, G.2
Watts, T.3
Kao, C.C.4
Li, P.5
-
52
-
-
84863717085
-
Crystal structures of STING protein reveal basis for recognition of cyclic di-GMP
-
Shang G, Zhu D, Li N, Zhang J, Zhu C, Lu D, Liu C, Yu Q, Zhao Y, Xu S, Gu L. 2012. Crystal structures of STING protein reveal basis for recognition of cyclic di-GMP. Nat Struct Mol Biol 19:725-727. http://dx.doi.org/10.1038/nsmb.2332.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 725-727
-
-
Shang, G.1
Zhu, D.2
Li, N.3
Zhang, J.4
Zhu, C.5
Lu, D.6
Liu, C.7
Yu, Q.8
Zhao, Y.9
Xu, S.10
Gu, L.11
-
53
-
-
84863009492
-
Structural analysis of the STING adaptor protein reveals a hydrophobic dimer interface and mode of cyclic di-GMP binding
-
Ouyang S, Song X, Wang Y, Ru H, Shaw N, Jiang Y, Niu F, Zhu Y, Qiu W, Parvatiyar K, Li Y, Zhang R, Cheng G, Liu ZJ. 2012. Structural analysis of the STING adaptor protein reveals a hydrophobic dimer interface and mode of cyclic di-GMP binding. Immunity 36:1073-1086. http://dx.doi.org/10.1016/j.immuni.2012.03.019.
-
(2012)
Immunity
, vol.36
, pp. 1073-1086
-
-
Ouyang, S.1
Song, X.2
Wang, Y.3
Ru, H.4
Shaw, N.5
Jiang, Y.6
Niu, F.7
Zhu, Y.8
Qiu, W.9
Parvatiyar, K.10
Li, Y.11
Zhang, R.12
Cheng, G.13
Liu, Z.J.14
-
54
-
-
84863722786
-
The structural basis for the sensing and binding of cyclic di-GMP by STING
-
Huang YH, Liu XY, Du XX, Jiang ZF, Su XD. 2012. The structural basis for the sensing and binding of cyclic di-GMP by STING. Nat Struct Mol Biol 19:728-730. http://dx.doi.org/10.1038/nsmb.2333.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 728-730
-
-
Huang, Y.H.1
Liu, X.Y.2
Du, X.X.3
Jiang, Z.F.4
Su, X.D.5
-
55
-
-
84871046431
-
Cation-π interaction: its role and relevance in chemistry, biology, and material science
-
Mahadevi AS, Sastry GN. 2013. Cation-π interaction: its role and relevance in chemistry, biology, and material science. Chem Rev 113:2100-2138. http://dx.doi.org/10.1021/cr300222d.
-
(2013)
Chem Rev
, vol.113
, pp. 2100-2138
-
-
Mahadevi, A.S.1
Sastry, G.N.2
-
56
-
-
0033578302
-
Cation-π interactions in structural biology
-
Gallivan JP, Dougherty DA. 1999. Cation-π interactions in structural biology. Proc Natl Acad Sci U S A 96:9459-9464. http://dx.doi.org/10.1073/pnas.96.17.9459.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 9459-9464
-
-
Gallivan, J.P.1
Dougherty, D.A.2
-
57
-
-
76749083886
-
Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP
-
Krasteva PV, Fong JC, Shikuma NJ, Beyhan S, Navarro MV, Yildiz FH, Sondermann H. 2010. Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP. Science 327:866-868. http://dx.doi.org/10.1126/science.1181185.
-
(2010)
Science
, vol.327
, pp. 866-868
-
-
Krasteva, P.V.1
Fong, J.C.2
Shikuma, N.J.3
Beyhan, S.4
Navarro, M.V.5
Yildiz, F.H.6
Sondermann, H.7
-
58
-
-
82455163827
-
The structure and inhibition of a GGDEF diguanylate cyclase complexed with (c-di-GMP)2 at the active site
-
Yang CY, Chin KH, Chuah ML, Liang ZX, Wang AH, Chou SH. 2011. The structure and inhibition of a GGDEF diguanylate cyclase complexed with (c-di-GMP)2 at the active site. Acta Crystallogr D Biol Crystallogr 67:997-1008. http://dx.doi.org/10.1107/S090744491104039X.
-
(2011)
Acta Crystallogr D Biol Crystallogr
, vol.67
, pp. 997-1008
-
-
Yang, C.Y.1
Chin, K.H.2
Chuah, M.L.3
Liang, Z.X.4
Wang, A.H.5
Chou, S.H.6
-
59
-
-
84873569415
-
Allosteric activation of exopolysaccharide synthesis through cyclic di-GMP-stimulated protein-protein interaction
-
Steiner S, Lori C, Boehm A, Jenal U. 2013. Allosteric activation of exopolysaccharide synthesis through cyclic di-GMP-stimulated protein-protein interaction. EMBO J 32:354-368. http://dx.doi.org/10.1038/emboj.2012.315.
-
(2013)
EMBO J
, vol.32
, pp. 354-368
-
-
Steiner, S.1
Lori, C.2
Boehm, A.3
Jenal, U.4
-
60
-
-
79954598477
-
Solution structure of the PilZ domain protein PA4608 complex with cyclic di-GMP identifies charge clustering as molecular readout
-
Habazettl J, Allan MG, Jenal U, Grzesiek S. 2011. Solution structure of the PilZ domain protein PA4608 complex with cyclic di-GMP identifies charge clustering as molecular readout. J Biol Chem 286:14304-14314. http://dx.doi.org/10.1074/jbc.M110.209007.
-
(2011)
J Biol Chem
, vol.286
, pp. 14304-14314
-
-
Habazettl, J.1
Allan, M.G.2
Jenal, U.3
Grzesiek, S.4
-
61
-
-
77949325119
-
The cAMP receptor-like protein CLP is a novel c-di-GMP receptor linking cell-cell signaling to virulence gene expression in Xanthomonas campestris
-
Chin KH, Lee YC, Tu ZL, Chen CH, Tseng YH, Yang JM, Ryan RP, McCarthy Y, Dow JM, Wang AH, Chou SH. 2010. The cAMP receptor-like protein CLP is a novel c-di-GMP receptor linking cell-cell signaling to virulence gene expression in Xanthomonas campestris. J Mol Biol 396:646-662. http://dx.doi.org/10.1016/j.jmb.2009.11.076.
-
(2010)
J Mol Biol
, vol.396
, pp. 646-662
-
-
Chin, K.H.1
Lee, Y.C.2
Tu, Z.L.3
Chen, C.H.4
Tseng, Y.H.5
Yang, J.M.6
Ryan, R.P.7
McCarthy, Y.8
Dow, J.M.9
Wang, A.H.10
Chou, S.H.11
-
62
-
-
80052315142
-
MrkH, a novel c-di-GMP-dependent transcriptional activator, controls Klebsiella pneumoniae biofilm formation by regulating type 3 fimbriae expression
-
Wilksch JJ, Yang J, Clements A, Gabbe JL, Short KR, Cao H, Cavaliere R, James CE, Whitchurch CB, Schembri MA, Chuah ML, Liang ZX, Wijburg OL, Jenney AW, Lithgow T, Strugnell RA. 2011. MrkH, a novel c-di-GMP-dependent transcriptional activator, controls Klebsiella pneumoniae biofilm formation by regulating type 3 fimbriae expression. PLoS Pathog 7:e1002204. http://dx.doi.org/10.1371/journal.ppat.1002204.
-
(2011)
PLoS Pathog
, vol.7
-
-
Wilksch, J.J.1
Yang, J.2
Clements, A.3
Gabbe, J.L.4
Short, K.R.5
Cao, H.6
Cavaliere, R.7
James, C.E.8
Whitchurch, C.B.9
Schembri, M.A.10
Chuah, M.L.11
Liang, Z.X.12
Wijburg, O.L.13
Jenney, A.W.14
Lithgow, T.15
Strugnell, R.A.16
-
63
-
-
84908330968
-
Novel cyclic di-GMP effectors of the YajQ protein family control bacterial virulence
-
An SQ, Caly DL, McCarthy Y, Murdoch SL, Ward J, Febrer M, Dow JM, Ryan RP. 2014. Novel cyclic di-GMP effectors of the YajQ protein family control bacterial virulence. PLoS Pathog 10:e1004429. http://dx.doi.org/10.1371/journal.ppat.1004429.
-
(2014)
PLoS Pathog
, vol.10
-
-
An, S.Q.1
Caly, D.L.2
McCarthy, Y.3
Murdoch, S.L.4
Ward, J.5
Febrer, M.6
Dow, J.M.7
Ryan, R.P.8
-
64
-
-
48149105151
-
A staphylococcal GGDEF domain protein regulates biofilm formation independently of c-di-GMP
-
Holland LM, O'Donnell ST, Ryjenkov DA, Gomelsky L, Slater SR, Fey PD, Gomelsky M, O'Gara JP. 2008. A staphylococcal GGDEF domain protein regulates biofilm formation independently of c-di-GMP. J Bacteriol 190:5178-5189. http://dx.doi.org/10.1128/JB.00375-08.
-
(2008)
J Bacteriol
, vol.190
, pp. 5178-5189
-
-
Holland, L.M.1
O'Donnell, S.T.2
Ryjenkov, D.A.3
Gomelsky, L.4
Slater, S.R.5
Fey, P.D.6
Gomelsky, M.7
O'Gara, J.P.8
-
65
-
-
61449219844
-
The BLUF-EAL protein YcgF acts as a direct anti-repressor in a blue-light response of Escherichia coli
-
Tschowri N, Busse S, Hengge R. 2009. The BLUF-EAL protein YcgF acts as a direct anti-repressor in a blue-light response of Escherichia coli. Genes Dev 23:522-534. http://dx.doi.org/10.1101/gad.499409.
-
(2009)
Genes Dev
, vol.23
, pp. 522-534
-
-
Tschowri, N.1
Busse, S.2
Hengge, R.3
-
66
-
-
84870597147
-
Structural insight of a concentrationdependent mechanism by which YdiV inhibits Escherichia coli flagellum biogenesis and motility
-
Li B, Li N, Wang F, Guo L, Huang Y, Liu X, Wei T, Zhu D, Liu C, Pan H, Xu S, Wang HW, Gu L. 2012. Structural insight of a concentrationdependent mechanism by which YdiV inhibits Escherichia coli flagellum biogenesis and motility. Nucleic Acids Res 40:11073-11085. http://dx.doi.org/10.1093/nar/gks869.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 11073-11085
-
-
Li, B.1
Li, N.2
Wang, F.3
Guo, L.4
Huang, Y.5
Liu, X.6
Wei, T.7
Zhu, D.8
Liu, C.9
Pan, H.10
Xu, S.11
Wang, H.W.12
Gu, L.13
-
67
-
-
33748705968
-
Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E
-
Suzuki K, Babitzke P, Kushner SR, Romeo T. 2006. Identification of a novel regulatory protein (CsrD) that targets the global regulatory RNAs CsrB and CsrC for degradation by RNase E. Genes Dev 20:2605-2617. http://dx.doi.org/10.1101/gad.1461606.
-
(2006)
Genes Dev
, vol.20
, pp. 2605-2617
-
-
Suzuki, K.1
Babitzke, P.2
Kushner, S.R.3
Romeo, T.4
-
68
-
-
33749180794
-
The HD-GYP domain of RpfG mediates a direct linkage between the Rpf quorum-sensing pathway and a subset of diguanylate cyclase proteins in the phytopathogen Xanthomonas axonopodis pv citri
-
Andrade MO, Alegria MC, Guzzo CR, Docena C, Rosa MC, Ramos CH, Farah CS. 2006. The HD-GYP domain of RpfG mediates a direct linkage between the Rpf quorum-sensing pathway and a subset of diguanylate cyclase proteins in the phytopathogen Xanthomonas axonopodis pv citri. Mol Microbiol 62:537-551. http://dx.doi.org/10.1111/j.1365-2958.2006.05386.x.
-
(2006)
Mol Microbiol
, vol.62
, pp. 537-551
-
-
Andrade, M.O.1
Alegria, M.C.2
Guzzo, C.R.3
Docena, C.4
Rosa, M.C.5
Ramos, C.H.6
Farah, C.S.7
-
69
-
-
84868101467
-
Dynamic complex formation between HD-GYP, GGDEF and PilZ domain proteins regulates motility in Xanthomonas campestris
-
Ryan RP, McCarthy Y, Kiely PA, O'Connor R, Farah CS, Armitage JP, Dow JM. 2012. Dynamic complex formation between HD-GYP, GGDEF and PilZ domain proteins regulates motility in Xanthomonas campestris. Mol Microbiol 86:557-567. http://dx.doi.org/10.1111/mmi.12000.
-
(2012)
Mol Microbiol
, vol.86
, pp. 557-567
-
-
Ryan, R.P.1
McCarthy, Y.2
Kiely, P.A.3
O'Connor, R.4
Farah, C.S.5
Armitage, J.P.6
Dow, J.M.7
-
70
-
-
80053932725
-
The CRP/FNR family protein Bcam1349 is a c-di-GMP effector that regulates biofilm formation in the respiratory pathogen Burkholderia cenocepacia
-
Fazli M, O'Connell A, Nilsson M, Niehaus K, Dow JM, Givskov M, Ryan RP, Tolker-Nielsen T. 2011. The CRP/FNR family protein Bcam1349 is a c-di-GMP effector that regulates biofilm formation in the respiratory pathogen Burkholderia cenocepacia. Mol Microbiol 82:327-341. http://dx.doi.org/10.1111/j.1365-2958.2011.07814.x.
-
(2011)
Mol Microbiol
, vol.82
, pp. 327-341
-
-
Fazli, M.1
O'Connell, A.2
Nilsson, M.3
Niehaus, K.4
Dow, J.M.5
Givskov, M.6
Ryan, R.P.7
Tolker-Nielsen, T.8
-
71
-
-
84899629752
-
BrlR from Pseudomonas aeruginosa is a c-di-GMP-responsive transcription factor
-
Chambers JR, Liao J, Schurr MJ, Sauer K. 2014. BrlR from Pseudomonas aeruginosa is a c-di-GMP-responsive transcription factor. Mol Microbiol 92:471-487. http://dx.doi.org/10.1111/mmi.12562.
-
(2014)
Mol Microbiol
, vol.92
, pp. 471-487
-
-
Chambers, J.R.1
Liao, J.2
Schurr, M.J.3
Sauer, K.4
-
72
-
-
84887482378
-
Cyclic diguanosine monophosphate represses bacterial flagella synthesis by interacting with the Walker A motif of the enhancer-binding protein FleQ
-
Baraquet C, Harwood CS. 2013. Cyclic diguanosine monophosphate represses bacterial flagella synthesis by interacting with the Walker A motif of the enhancer-binding protein FleQ. Proc Natl Acad Sci U S A 110:18478-18483. http://dx.doi.org/10.1073/pnas.1318972110.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 18478-18483
-
-
Baraquet, C.1
Harwood, C.S.2
-
73
-
-
84890114269
-
Cyclic di-GMP inhibits Vibrio cholerae motility by repressing induction of transcription and inducing extracellular polysaccharide production
-
Srivastava D, Hsieh ML, Khataokar A, Neiditch MB, Waters CM. 2013. Cyclic di-GMP inhibits Vibrio cholerae motility by repressing induction of transcription and inducing extracellular polysaccharide production. Mol Microbiol 90:1262-1276. http://dx.doi.org/10.1111/mmi.12432.
-
(2013)
Mol Microbiol
, vol.90
, pp. 1262-1276
-
-
Srivastava, D.1
Hsieh, M.L.2
Khataokar, A.3
Neiditch, M.B.4
Waters, C.M.5
-
74
-
-
84871200600
-
LtmA, a novel cyclic di-GMP-responsive activator, broadly regulates the expression of lipid transport and metabolism genes in Mycobacterium smegmatis
-
Li W, He ZG. 2012. LtmA, a novel cyclic di-GMP-responsive activator, broadly regulates the expression of lipid transport and metabolism genes in Mycobacterium smegmatis. Nucleic Acids Res 40:11292-11307. http://dx.doi.org/10.1093/nar/gks923.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 11292-11307
-
-
Li, W.1
He, Z.G.2
-
75
-
-
80655125443
-
Integration of cyclic di-GMP and quorum sensing in the control of vpsT and aphA in Vibrio cholerae
-
Srivastava D, Harris RC, Waters CM. 2011. Integration of cyclic di-GMP and quorum sensing in the control of vpsT and aphA in Vibrio cholerae. J Bacteriol 193:6331-6341. http://dx.doi.org/10.1128/JB.05167-11.
-
(2011)
J Bacteriol
, vol.193
, pp. 6331-6341
-
-
Srivastava, D.1
Harris, R.C.2
Waters, C.M.3
-
76
-
-
84891782659
-
Pfam: the protein families database
-
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer ELL, Tate J, Punta M. 2014. Pfam: the protein families database. Nucleic Acids Res 42:D222-D230. http://dx.doi.org/10.1093/nar/gkt1223.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D222-D230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
Eddy, S.R.6
Heger, A.7
Hetherington, K.8
Holm, L.9
Mistry, J.10
Sonnhammer, E.L.L.11
Tate, J.12
Punta, M.13
-
77
-
-
80053091424
-
Differential radial capillary action of ligand assay for high-throughput detection of protein-metabolite interactions
-
Roelofs KG, Wang J, Sintim HO, Lee VT. 2011. Differential radial capillary action of ligand assay for high-throughput detection of protein-metabolite interactions. Proc Natl Acad Sci U S A 108:15528-15533. http://dx.doi.org/10.1073/pnas.1018949108.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 15528-15533
-
-
Roelofs, K.G.1
Wang, J.2
Sintim, H.O.3
Lee, V.T.4
-
78
-
-
84864078697
-
A novel capture compound for the identification and analysis of cyclic di-GMP binding proteins
-
Nesper J, Reinders A, Glatter T, Schmidt A, Jenal U. 2012. A novel capture compound for the identification and analysis of cyclic di-GMP binding proteins. J Proteomics 75:4874-4878. http://dx.doi.org/10.1016/j.jprot.2012.05.033.
-
(2012)
J Proteomics
, vol.75
, pp. 4874-4878
-
-
Nesper, J.1
Reinders, A.2
Glatter, T.3
Schmidt, A.4
Jenal, U.5
-
79
-
-
84937719576
-
Cyclic di-GMP acts as a cell cycle oscillator to drive chromosome replication
-
Lori C, Ozaki S, Steiner S, Bohm R, Abel S, Dubey BN, Schirmer T, Hiller S, Jenal U. 2015. Cyclic di-GMP acts as a cell cycle oscillator to drive chromosome replication. Nature 523:236-239. http://dx.doi.org/10.1038/nature14473.
-
(2015)
Nature
, vol.523
, pp. 236-239
-
-
Lori, C.1
Ozaki, S.2
Steiner, S.3
Bohm, R.4
Abel, S.5
Dubey, B.N.6
Schirmer, T.7
Hiller, S.8
Jenal, U.9
-
80
-
-
77953244382
-
Asymmetrical distribution of the second messenger c-di-GMP upon bacterial cell division
-
Christen M, Kulasekara HD, Christen B, Kulasekara BR, Hoffman LR, Miller SI. 2010. Asymmetrical distribution of the second messenger c-di-GMP upon bacterial cell division. Science 328:1295-1297. http://dx.doi.org/10.1126/science.1188658.
-
(2010)
Science
, vol.328
, pp. 1295-1297
-
-
Christen, M.1
Kulasekara, H.D.2
Christen, B.3
Kulasekara, B.R.4
Hoffman, L.R.5
Miller, S.I.6
-
81
-
-
84870985711
-
The response threshold of Salmonella PilZ domain proteins is determined by their binding affinities for c-di-GMP
-
Pultz IS, Christen M, Kulasekara HD, Kennard A, Kulasekara B, Miller SI. 2012. The response threshold of Salmonella PilZ domain proteins is determined by their binding affinities for c-di-GMP. Mol Microbiol 86:1424-1440. http://dx.doi.org/10.1111/mmi.12066.
-
(2012)
Mol Microbiol
, vol.86
, pp. 1424-1440
-
-
Pultz, I.S.1
Christen, M.2
Kulasekara, H.D.3
Kennard, A.4
Kulasekara, B.5
Miller, S.I.6
-
82
-
-
84875261797
-
The c-di-GMP recognition mechanism of the PilZ domain of bacterial cellulose synthase subunit A
-
Fujiwara T, Komoda K, Sakurai N, Tajima K, Tanaka I, Yao M. 2013. The c-di-GMP recognition mechanism of the PilZ domain of bacterial cellulose synthase subunit A. Biochem Biophys Res Commun 431:802-807. http://dx.doi.org/10.1016/j.bbrc.2012.12.103.
-
(2013)
Biochem Biophys Res Commun
, vol.431
, pp. 802-807
-
-
Fujiwara, T.1
Komoda, K.2
Sakurai, N.3
Tajima, K.4
Tanaka, I.5
Yao, M.6
-
83
-
-
34547682212
-
The second messenger bis-(3'-5')-cyclic-GMP and its PilZ domain-containing receptor Alg44 are required for alginate biosynthesis in Pseudomonas aeruginosa
-
Merighi M, Lee VT, Hyodo M, Hayakawa Y, Lory S. 2007. The second messenger bis-(3'-5')-cyclic-GMP and its PilZ domain-containing receptor Alg44 are required for alginate biosynthesis in Pseudomonas aeruginosa. Mol Microbiol 65:876-895. http://dx.doi.org/10.1111/j.1365-2958.2007.05817.x.
-
(2007)
Mol Microbiol
, vol.65
, pp. 876-895
-
-
Merighi, M.1
Lee, V.T.2
Hyodo, M.3
Hayakawa, Y.4
Lory, S.5
-
84
-
-
84880068681
-
Integration of the second messenger c-di-GMP into the chemotactic signaling pathway
-
Russell MH, Bible AN, Fang X, Gooding J, Campagna S, Gomelsky M, Alexandre G. 2013. Integration of the second messenger c-di-GMP into the chemotactic signaling pathway. mBio 4:e00001-00013. http://dx.doi.org/10.1128/mBio.00001-13.
-
(2013)
mBio
, vol.4
, pp. e00001-00013
-
-
Russell, M.H.1
Bible, A.N.2
Fang, X.3
Gooding, J.4
Campagna, S.5
Gomelsky, M.6
Alexandre, G.7
-
85
-
-
84865741837
-
Structures of the PelD cyclic diguanylate effector involved in pellicle formation in Pseudomonas aeruginosa PAO1
-
Li Z, Chen JH, Hao Y, Nair SK. 2012. Structures of the PelD cyclic diguanylate effector involved in pellicle formation in Pseudomonas aeruginosa PAO1. J Biol Chem 287:30191-30204. http://dx.doi.org/10.1074/jbc.M112.378273.
-
(2012)
J Biol Chem
, vol.287
, pp. 30191-30204
-
-
Li, Z.1
Chen, J.H.2
Hao, Y.3
Nair, S.K.4
-
86
-
-
58149485506
-
Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression
-
Duerig A, Abel S, Folcher M, Nicollier M, Schwede T, Amiot N, Giese B, Jenal U. 2009. Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression. Genes Dev 23:93-104. http://dx.doi.org/10.1101/gad.502409.
-
(2009)
Genes Dev
, vol.23
, pp. 93-104
-
-
Duerig, A.1
Abel, S.2
Folcher, M.3
Nicollier, M.4
Schwede, T.5
Amiot, N.6
Giese, B.7
Jenal, U.8
-
87
-
-
84866316294
-
Type IV pilus assembly in Pseudomonas aeruginosa over a broad range of cyclic di-GMP concentrations
-
Jain R, Behrens AJ, Kaever V, Kazmierczak BI. 2012. Type IV pilus assembly in Pseudomonas aeruginosa over a broad range of cyclic di-GMP concentrations. J Bacteriol 194:4285-4294. http://dx.doi.org/10.1128/JB.00803-12.
-
(2012)
J Bacteriol
, vol.194
, pp. 4285-4294
-
-
Jain, R.1
Behrens, A.J.2
Kaever, V.3
Kazmierczak, B.I.4
-
88
-
-
78951471881
-
Binding of cyclic diguanylate in the non-catalytic EAL domain of FimX induces a long-range conformational change
-
Qi Y, Chuah ML, Dong X, Xie K, Luo Z, Tang K, Liang ZX. 2011. Binding of cyclic diguanylate in the non-catalytic EAL domain of FimX induces a long-range conformational change. J Biol Chem 286:2910-2917. http://dx.doi.org/10.1074/jbc.M110.196220.
-
(2011)
J Biol Chem
, vol.286
, pp. 2910-2917
-
-
Qi, Y.1
Chuah, M.L.2
Dong, X.3
Xie, K.4
Luo, Z.5
Tang, K.6
Liang, Z.X.7
-
89
-
-
84899843009
-
The degenerate EAL-GGDEF domain protein Filp functions as a cyclic di-GMP receptor and specifically interacts with the PilZ-domain protein PXO_02715 to regulate virulence in Xanthomonas oryzae pv. oryzae
-
Yang F, Tian F, Li X, Fan S, Chen H, Wu M, Yang CH, He C. 2014. The degenerate EAL-GGDEF domain protein Filp functions as a cyclic di-GMP receptor and specifically interacts with the PilZ-domain protein PXO_02715 to regulate virulence in Xanthomonas oryzae pv. oryzae. Mol Plant Microbe Interact 27:578-589. http://dx.doi.org/10.1094/MPMI-12-13-0371-R.
-
(2014)
Mol Plant Microbe Interact
, vol.27
, pp. 578-589
-
-
Yang, F.1
Tian, F.2
Li, X.3
Fan, S.4
Chen, H.5
Wu, M.6
Yang, C.H.7
He, C.8
-
90
-
-
80054966913
-
STING is a direct innate immune sensor of cyclic di-GMP
-
Burdette DL, Monroe KM, Sotelo-Troha K, Iwig JS, Eckert B, Hyodo M, Hayakawa Y, Vance RE. 2011. STING is a direct innate immune sensor of cyclic di-GMP. Nature 478:515-518. http://dx.doi.org/10.1038/nature10429.
-
(2011)
Nature
, vol.478
, pp. 515-518
-
-
Burdette, D.L.1
Monroe, K.M.2
Sotelo-Troha, K.3
Iwig, J.S.4
Eckert, B.5
Hyodo, M.6
Hayakawa, Y.7
Vance, R.E.8
-
91
-
-
84869403247
-
The helicase DDX41 recognizes the bacterial secondary messengers cyclic di-GMP and cyclic di-AMP to activate a type I interferon immune response
-
Parvatiyar K, Zhang Z, Teles RM, Ouyang S, Jiang Y, Iyer SS, Zaver SA, Schenk M, Zeng S, Zhong W, Liu ZJ, Modlin RL, Liu YJ, Cheng G. 2012. The helicase DDX41 recognizes the bacterial secondary messengers cyclic di-GMP and cyclic di-AMP to activate a type I interferon immune response. Nat Immunol 13:1155-1161. http://dx.doi.org/10.1038/ni.2460.
-
(2012)
Nat Immunol
, vol.13
, pp. 1155-1161
-
-
Parvatiyar, K.1
Zhang, Z.2
Teles, R.M.3
Ouyang, S.4
Jiang, Y.5
Iyer, S.S.6
Zaver, S.A.7
Schenk, M.8
Zeng, S.9
Zhong, W.10
Liu, Z.J.11
Modlin, R.L.12
Liu, Y.J.13
Cheng, G.14
-
92
-
-
79952078501
-
Engineering a novel c-di-GMP-binding protein for biofilm dispersal
-
Ma Q, Yang Z, Pu M, Peti W, Wood TK. 2011. Engineering a novel c-di-GMP-binding protein for biofilm dispersal. Environ Microbiol 13:631-642. http://dx.doi.org/10.1111/j.1462-2920.2010.02368.x.
-
(2011)
Environ Microbiol
, vol.13
, pp. 631-642
-
-
Ma, Q.1
Yang, Z.2
Pu, M.3
Peti, W.4
Wood, T.K.5
-
93
-
-
79952735655
-
Cyclic di-GMP activation of polynucleotide phosphorylase signal-dependent RNA processing
-
Tuckerman JR, Gonzalez G, Gilles-Gonzalez MA. 2011. Cyclic di-GMP activation of polynucleotide phosphorylase signal-dependent RNA processing. J Mol Biol 407:633-639. http://dx.doi.org/10.1016/j.jmb.2011.02.019.
-
(2011)
J Mol Biol
, vol.407
, pp. 633-639
-
-
Tuckerman, J.R.1
Gonzalez, G.2
Gilles-Gonzalez, M.A.3
-
94
-
-
84900987101
-
Cyclic dinucleotides bind the C-linker of HCN4 to control channel cAMP responsiveness
-
Lolicato M, Bucchi A, Arrigoni C, Zucca S, Nardini M, Schroeder I, Simmons K, Aquila M, DiFrancesco D, Bolognesi M, Schwede F, Kashin D, Fishwick CW, Johnson AP, Thiel G, Moroni A. 2014. Cyclic dinucleotides bind the C-linker of HCN4 to control channel cAMP responsiveness. Nat Chem Biol 10:457-462. http://dx.doi.org/10.1038/nchembio.1521.
-
(2014)
Nat Chem Biol
, vol.10
, pp. 457-462
-
-
Lolicato, M.1
Bucchi, A.2
Arrigoni, C.3
Zucca, S.4
Nardini, M.5
Schroeder, I.6
Simmons, K.7
Aquila, M.8
DiFrancesco, D.9
Bolognesi, M.10
Schwede, F.11
Kashin, D.12
Fishwick, C.W.13
Johnson, A.P.14
Thiel, G.15
Moroni, A.16
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