메뉴 건너뛰기




Volumn 37, Issue , 2016, Pages 9-16

Dosage compensation and nuclear organization: Cluster to control chromosome-wide gene expression

Author keywords

[No Author keywords available]

Indexed keywords

CONDENSIN; LONG UNTRANSLATED RNA; NUCLEOPORIN; RIBONUCLEOPROTEIN;

EID: 84952670880     PISSN: 0959437X     EISSN: 18790380     Source Type: Journal    
DOI: 10.1016/j.gde.2015.11.007     Document Type: Review
Times cited : (6)

References (64)
  • 1
    • 84855297335 scopus 로고    scopus 로고
    • A decade of 3C technologies: insights into nuclear organization
    • de Wit E., de Laat W. A decade of 3C technologies: insights into nuclear organization. Genes Dev 2012, 26:11-24.
    • (2012) Genes Dev , vol.26 , pp. 11-24
    • de Wit, E.1    de Laat, W.2
  • 2
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon J.R., Selvaraj S., Yue F., Kim A., Li Y., Shen Y., Hu M., Liu J.S., Ren B. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 2012, 485:376-380.
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5    Shen, Y.6    Hu, M.7    Liu, J.S.8    Ren, B.9
  • 4
    • 84943358862 scopus 로고    scopus 로고
    • Structural and functional diversity of topologically associating domains
    • Dekker J., Heard E. Structural and functional diversity of topologically associating domains. FEBS Lett 2015, 589:2877-2884.
    • (2015) FEBS Lett , vol.589 , pp. 2877-2884
    • Dekker, J.1    Heard, E.2
  • 6
    • 84892474589 scopus 로고    scopus 로고
    • Polycomb silencing: from linear chromatin domains to 3D chromosome folding
    • Cheutin T., Cavalli G. Polycomb silencing: from linear chromatin domains to 3D chromosome folding. Curr Opin Genet Dev 2014, 25C:30-37.
    • (2014) Curr Opin Genet Dev , vol.25C , pp. 30-37
    • Cheutin, T.1    Cavalli, G.2
  • 8
    • 85045484695 scopus 로고
    • A morphological distinction between neurones of the male and female, and the behaviour of the nucleolar satellite during accelerated nucleoprotein synthesis
    • Barr M.L., Bertram E.G. A morphological distinction between neurones of the male and female, and the behaviour of the nucleolar satellite during accelerated nucleoprotein synthesis. Nature 1949, 163:676.
    • (1949) Nature , vol.163 , pp. 676
    • Barr, M.L.1    Bertram, E.G.2
  • 9
    • 43149100549 scopus 로고    scopus 로고
    • The facultative heterochromatin of the inactive X chromosome has a distinctive condensed ultrastructure
    • Rego A., Sinclair P.B., Tao W., Kireev I., Belmont A.S. The facultative heterochromatin of the inactive X chromosome has a distinctive condensed ultrastructure. J Cell Sci 2008, 121:1119-1127.
    • (2008) J Cell Sci , vol.121 , pp. 1119-1127
    • Rego, A.1    Sinclair, P.B.2    Tao, W.3    Kireev, I.4    Belmont, A.S.5
  • 10
    • 84938412430 scopus 로고    scopus 로고
    • The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation
    • Yang F., Deng X., Ma W., Berletch J.B., Rabaia N., Wei G., Moore J.M., Filippova G.N., Xu J., Liu Y., et al. The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation. Genome Biol 2015, 16:52.
    • (2015) Genome Biol , vol.16 , pp. 52
    • Yang, F.1    Deng, X.2    Ma, W.3    Berletch, J.B.4    Rabaia, N.5    Wei, G.6    Moore, J.M.7    Filippova, G.N.8    Xu, J.9    Liu, Y.10
  • 11
    • 84900824181 scopus 로고    scopus 로고
    • Three-dimensional super resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci
    • Smeets D., Markaki Y., Schmid V.J., Kraus F., Tattermusch A., Cerase A., Sterr M., Fiedler S., Demmerle J., Popken J., et al. Three-dimensional super resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci. Epigenet Chromatin 2014, 7:8.
    • (2014) Epigenet Chromatin , vol.7 , pp. 8
    • Smeets, D.1    Markaki, Y.2    Schmid, V.J.3    Kraus, F.4    Tattermusch, A.5    Cerase, A.6    Sterr, M.7    Fiedler, S.8    Demmerle, J.9    Popken, J.10
  • 12
    • 33746076412 scopus 로고    scopus 로고
    • A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced
    • Chaumeil J., Le Baccon P., Wutz A., Heard E. A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced. Genes Dev 2006, 20:2223-2237.
    • (2006) Genes Dev , vol.20 , pp. 2223-2237
    • Chaumeil, J.1    Le Baccon, P.2    Wutz, A.3    Heard, E.4
  • 17
    • 48949102889 scopus 로고    scopus 로고
    • DXZ4 chromatin adopts an opposing conformation to that of the surrounding chromosome and acquires a novel inactive X-specific role involving CTCF and antisense transcripts
    • Chadwick B.P. DXZ4 chromatin adopts an opposing conformation to that of the surrounding chromosome and acquires a novel inactive X-specific role involving CTCF and antisense transcripts. Genome Res 2008, 18:1259-1269.
    • (2008) Genome Res , vol.18 , pp. 1259-1269
    • Chadwick, B.P.1
  • 18
    • 84867116639 scopus 로고    scopus 로고
    • The macrosatellite DXZ4 mediates CTCF-dependent long-range intrachromosomal interactions on the human inactive X chromosome
    • Horakova A.H., Moseley S.C., McLaughlin C.R., Tremblay D.C., Chadwick B.P. The macrosatellite DXZ4 mediates CTCF-dependent long-range intrachromosomal interactions on the human inactive X chromosome. Hum Mol Genet 2012, 21:4367-4377.
    • (2012) Hum Mol Genet , vol.21 , pp. 4367-4377
    • Horakova, A.H.1    Moseley, S.C.2    McLaughlin, C.R.3    Tremblay, D.C.4    Chadwick, B.P.5
  • 19
    • 81155159786 scopus 로고    scopus 로고
    • Origin and evolution of the long non-coding genes in the X-inactivation center
    • Romito A., Rougeulle C. Origin and evolution of the long non-coding genes in the X-inactivation center. Biochimie 2011, 93:1935-1942.
    • (2011) Biochimie , vol.93 , pp. 1935-1942
    • Romito, A.1    Rougeulle, C.2
  • 20
    • 84900297485 scopus 로고    scopus 로고
    • Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription
    • Giorgetti L., Galupa R., Nora E.P., Piolot T., Lam F., Dekker J., Tiana G., Heard E. Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription. Cell 2014, 157:950-963.
    • (2014) Cell , vol.157 , pp. 950-963
    • Giorgetti, L.1    Galupa, R.2    Nora, E.P.3    Piolot, T.4    Lam, F.5    Dekker, J.6    Tiana, G.7    Heard, E.8
  • 21
    • 84930613787 scopus 로고    scopus 로고
    • X-chromosome inactivation: new insights into cis and trans regulation
    • Galupa R., Heard E. X-chromosome inactivation: new insights into cis and trans regulation. Curr Opin Genet Dev 2015, 31:57-66.
    • (2015) Curr Opin Genet Dev , vol.31 , pp. 57-66
    • Galupa, R.1    Heard, E.2
  • 25
    • 0032805149 scopus 로고    scopus 로고
    • Conditional deletion of Xist disrupts histone macroH2A localization but not maintenance of X inactivation
    • Csankovszki G., Panning B., Bates B., Pehrson J.R., Jaenisch R. Conditional deletion of Xist disrupts histone macroH2A localization but not maintenance of X inactivation. Nat Genet 1999, 22:323-324.
    • (1999) Nat Genet , vol.22 , pp. 323-324
    • Csankovszki, G.1    Panning, B.2    Bates, B.3    Pehrson, J.R.4    Jaenisch, R.5
  • 28
    • 77956607961 scopus 로고    scopus 로고
    • The matrix protein hnRNP U is required for chromosomal localization of Xist RNA
    • Hasegawa Y., Brockdorff N., Kawano S., Tsutui K., Nakagawa S. The matrix protein hnRNP U is required for chromosomal localization of Xist RNA. Dev Cell 2010, 19:469-476.
    • (2010) Dev Cell , vol.19 , pp. 469-476
    • Hasegawa, Y.1    Brockdorff, N.2    Kawano, S.3    Tsutui, K.4    Nakagawa, S.5
  • 30
    • 84877825124 scopus 로고    scopus 로고
    • Building silent compartments at the nuclear periphery: a recurrent theme
    • Meister P., Taddei A. Building silent compartments at the nuclear periphery: a recurrent theme. Curr Opin Genet Dev 2013, 23:96-103.
    • (2013) Curr Opin Genet Dev , vol.23 , pp. 96-103
    • Meister, P.1    Taddei, A.2
  • 32
    • 0033988212 scopus 로고    scopus 로고
    • The Drosophila MSL complex acetylates histone H4 at lysine 16, a chromatin modification linked to dosage compensation
    • Smith E.R., Pannuti A., Gu W., Steurnagel A., Cook R.G., Allis C.D., Lucchesi J.C. The Drosophila MSL complex acetylates histone H4 at lysine 16, a chromatin modification linked to dosage compensation. Mol Cell Biol 2000, 20:312-318.
    • (2000) Mol Cell Biol , vol.20 , pp. 312-318
    • Smith, E.R.1    Pannuti, A.2    Gu, W.3    Steurnagel, A.4    Cook, R.G.5    Allis, C.D.6    Lucchesi, J.C.7
  • 35
    • 58149165026 scopus 로고    scopus 로고
    • The chromosomal high-affinity binding sites for the Drosophila dosage compensation complex
    • e1000302
    • Straub T., Grimaud C., Gilfillan G.D., Mitterweger A., Becker P.B. The chromosomal high-affinity binding sites for the Drosophila dosage compensation complex. PLoS Genet 2008, 4. e1000302.
    • (2008) PLoS Genet , vol.4
    • Straub, T.1    Grimaud, C.2    Gilfillan, G.D.3    Mitterweger, A.4    Becker, P.B.5
  • 36
    • 84914169336 scopus 로고    scopus 로고
    • Structural basis of X chromosome DNA recognition by the MSL2 CXC domain during Drosophila dosage compensation
    • Zheng S., Villa R., Wang J., Feng Y., Becker P.B., Ye K. Structural basis of X chromosome DNA recognition by the MSL2 CXC domain during Drosophila dosage compensation. Genes Dev 2014, 28:2652-2662.
    • (2014) Genes Dev , vol.28 , pp. 2652-2662
    • Zheng, S.1    Villa, R.2    Wang, J.3    Feng, Y.4    Becker, P.B.5    Ye, K.6
  • 38
    • 0036500632 scopus 로고    scopus 로고
    • The roX genes encode redundant male-specific lethal transcripts required for targeting of the MSL complex
    • Meller V.H., Rattner B.P. The roX genes encode redundant male-specific lethal transcripts required for targeting of the MSL complex. EMBO J 2002, 21:1084-1091.
    • (2002) EMBO J , vol.21 , pp. 1084-1091
    • Meller, V.H.1    Rattner, B.P.2
  • 39
    • 84951918935 scopus 로고    scopus 로고
    • High-affinity sites form an interaction network to facilitate spreading of the MSL complex across the X chromosome in Drosophila
    • Ramirez F., Lingg T., Toscano S., Lam K.C., Georgiev P., Chung H.R., Lajoie B.R., de Wit E., Zhan Y., de Laat W., et al. High-affinity sites form an interaction network to facilitate spreading of the MSL complex across the X chromosome in Drosophila. Mol Cell 2015, 60:146-162.
    • (2015) Mol Cell , vol.60 , pp. 146-162
    • Ramirez, F.1    Lingg, T.2    Toscano, S.3    Lam, K.C.4    Georgiev, P.5    Chung, H.R.6    Lajoie, B.R.7    de Wit, E.8    Zhan, Y.9    de Laat, W.10
  • 40
    • 2242492681 scopus 로고    scopus 로고
    • Extent of chromatin spreading determined by roX RNA recruitment of MSL proteins
    • Park Y., Kelley R.L., Oh H., Kuroda M.I., Meller V.H. Extent of chromatin spreading determined by roX RNA recruitment of MSL proteins. Science 2002, 298:1620-1623.
    • (2002) Science , vol.298 , pp. 1620-1623
    • Park, Y.1    Kelley, R.L.2    Oh, H.3    Kuroda, M.I.4    Meller, V.H.5
  • 41
    • 84906322449 scopus 로고    scopus 로고
    • Revealing long noncoding RNA architecture and functions using domain-specific chromatin isolation by RNA purification
    • Quinn J.J., Ilik I.A., Qu K., Georgiev P., Chu C., Akhtar A., Chang H.Y. Revealing long noncoding RNA architecture and functions using domain-specific chromatin isolation by RNA purification. Nat Biotechnol 2014, 32:933-940.
    • (2014) Nat Biotechnol , vol.32 , pp. 933-940
    • Quinn, J.J.1    Ilik, I.A.2    Qu, K.3    Georgiev, P.4    Chu, C.5    Akhtar, A.6    Chang, H.Y.7
  • 42
    • 70350629982 scopus 로고    scopus 로고
    • The dosage compensation complex shapes the conformation of the X chromosome in Drosophila
    • Grimaud C., Becker P.B. The dosage compensation complex shapes the conformation of the X chromosome in Drosophila. Genes Dev 2009, 23:2490-2495.
    • (2009) Genes Dev , vol.23 , pp. 2490-2495
    • Grimaud, C.1    Becker, P.B.2
  • 43
    • 77649210955 scopus 로고    scopus 로고
    • Nuclear pore proteins nup153 and megator define transcriptionally active regions in the Drosophila genome
    • e1000846
    • Vaquerizas J.M., Suyama R., Kind J., Miura K., Luscombe N.M., Akhtar A. Nuclear pore proteins nup153 and megator define transcriptionally active regions in the Drosophila genome. PLoS Genet 2010, 6. e1000846.
    • (2010) PLoS Genet , vol.6
    • Vaquerizas, J.M.1    Suyama, R.2    Kind, J.3    Miura, K.4    Luscombe, N.M.5    Akhtar, A.6
  • 45
    • 0033546359 scopus 로고    scopus 로고
    • Dosage compensation proteins targeted to X chromosomes by a determinant of hermaphrodite fate
    • Dawes H.E., Berlin D.S., Lapidus D.M., Nusbaum C., Davis T.L., Meyer B.J. Dosage compensation proteins targeted to X chromosomes by a determinant of hermaphrodite fate. Science 1999, 284:1800-1804.
    • (1999) Science , vol.284 , pp. 1800-1804
    • Dawes, H.E.1    Berlin, D.S.2    Lapidus, D.M.3    Nusbaum, C.4    Davis, T.L.5    Meyer, B.J.6
  • 46
    • 33845244857 scopus 로고    scopus 로고
    • Clustered DNA motifs mark X chromosomes for repression by a dosage compensation complex
    • McDonel P., Jans J., Peterson B.K., Meyer B.J. Clustered DNA motifs mark X chromosomes for repression by a dosage compensation complex. Nature 2006, 444:614-618.
    • (2006) Nature , vol.444 , pp. 614-618
    • McDonel, P.1    Jans, J.2    Peterson, B.K.3    Meyer, B.J.4
  • 47
    • 71849116882 scopus 로고    scopus 로고
    • The C. elegans dosage compensation complex propagates dynamically and independently of X chromosome sequence
    • Ercan S., Dick L.L., Lieb J.D. The C. elegans dosage compensation complex propagates dynamically and independently of X chromosome sequence. Curr Biol CB 2009, 19:1777-1787.
    • (2009) Curr Biol CB , vol.19 , pp. 1777-1787
    • Ercan, S.1    Dick, L.L.2    Lieb, J.D.3
  • 49
    • 84879288762 scopus 로고    scopus 로고
    • Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation
    • e00808
    • Kruesi W.S., Core L.J., Waters C.T., Lis J.T., Meyer B.J. Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation. eLife 2013, 2. e00808.
    • (2013) eLife , vol.2
    • Kruesi, W.S.1    Core, L.J.2    Waters, C.T.3    Lis, J.T.4    Meyer, B.J.5
  • 50
    • 84861373533 scopus 로고    scopus 로고
    • Caenorhabditis elegans dosage compensation regulates histone H4 chromatin state on X chromosomes
    • Wells M.B., Snyder M.J., Custer L.M., Csankovszki G. Caenorhabditis elegans dosage compensation regulates histone H4 chromatin state on X chromosomes. Mol Cell Biol 2012, 32:1710-1719.
    • (2012) Mol Cell Biol , vol.32 , pp. 1710-1719
    • Wells, M.B.1    Snyder, M.J.2    Custer, L.M.3    Csankovszki, G.4
  • 51
    • 0028104856 scopus 로고
    • DPY-27: a chromosome condensation protein homolog that regulates C. elegans dosage compensation through association with the X chromosome
    • Chuang P.T., Albertson D.G., Meyer B.J. DPY-27: a chromosome condensation protein homolog that regulates C. elegans dosage compensation through association with the X chromosome. Cell 1994, 79:459-474.
    • (1994) Cell , vol.79 , pp. 459-474
    • Chuang, P.T.1    Albertson, D.G.2    Meyer, B.J.3
  • 52
  • 53
    • 84988958100 scopus 로고    scopus 로고
    • The C. elegans dosage compensation complex mediates interphase X chromosome compaction
    • Lau A.C., Nabeshima K., Csankovszki G. The C. elegans dosage compensation complex mediates interphase X chromosome compaction. Epigenet Chromatin 2014, 7:31.
    • (2014) Epigenet Chromatin , vol.7 , pp. 31
    • Lau, A.C.1    Nabeshima, K.2    Csankovszki, G.3
  • 55
    • 79551584898 scopus 로고    scopus 로고
    • Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2
    • Ikegami K., Egelhofer T.A., Strome S., Lieb J.D. Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2. Genome Biol 2010, 11:R120.
    • (2010) Genome Biol , vol.11 , pp. R120
    • Ikegami, K.1    Egelhofer, T.A.2    Strome, S.3    Lieb, J.D.4
  • 57
    • 84884596364 scopus 로고    scopus 로고
    • Integral nuclear pore proteins bind to Pol III-transcribed genes and are required for Pol III transcript processing in C. elegans
    • Ikegami K., Lieb J.D. Integral nuclear pore proteins bind to Pol III-transcribed genes and are required for Pol III transcript processing in C. elegans. Mol Cell 2013, 51:840-849.
    • (2013) Mol Cell , vol.51 , pp. 840-849
    • Ikegami, K.1    Lieb, J.D.2
  • 58
    • 84952669991 scopus 로고    scopus 로고
    • Linking dosage compensation and X chromosome nuclear organization in C. elegans
    • Sharma R., Meister P. Linking dosage compensation and X chromosome nuclear organization in C. elegans. Nucleus 2015, 6:266-272.
    • (2015) Nucleus , vol.6 , pp. 266-272
    • Sharma, R.1    Meister, P.2
  • 60
    • 33750212321 scopus 로고    scopus 로고
    • Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
    • Simonis M., Klous P., Splinter E., Moshkin Y., Willemsen R., de Wit E., van Steensel B., de Laat W. Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat Genet 2006, 38:1348-1354.
    • (2006) Nat Genet , vol.38 , pp. 1348-1354
    • Simonis, M.1    Klous, P.2    Splinter, E.3    Moshkin, Y.4    Willemsen, R.5    de Wit, E.6    van Steensel, B.7    de Laat, W.8
  • 61
  • 63
    • 70149094741 scopus 로고    scopus 로고
    • Global identification of yeast chromosome interactions using genome conformation capture
    • Rodley C.D., Bertels F., Jones B., O'Sullivan J.M. Global identification of yeast chromosome interactions using genome conformation capture. Fungal Genet Biol 2009, 46:879-886.
    • (2009) Fungal Genet Biol , vol.46 , pp. 879-886
    • Rodley, C.D.1    Bertels, F.2    Jones, B.3    O'Sullivan, J.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.