메뉴 건너뛰기




Volumn 8, Issue 1, 2015, Pages

Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation

Author keywords

Chemostat; Clostridium thermocellum DSM 1313; GS GOGAT; Hydrogenase; Methyl viologen; Microarray; Redox; Sulfate; Transcriptomics

Indexed keywords

AMINO ACIDS; BIOCHEMISTRY; BIOSYNTHESIS; CHEMOSTATS; CLOSTRIDIUM; ETHANOL; FERMENTATION; GENE ENCODING; GENES; METABOLISM; MICROARRAYS; PHYSIOLOGY; PORPHYRINS; REDOX REACTIONS; SULFUR COMPOUNDS;

EID: 84949998880     PISSN: 17546834     EISSN: None     Source Type: Journal    
DOI: 10.1186/s13068-015-0394-9     Document Type: Article
Times cited : (18)

References (58)
  • 2
    • 25844505728 scopus 로고    scopus 로고
    • Consolidated bioprocessing of cellulosic biomass: an update
    • 1:CAS:528:DC%2BD2MXhtVKjsLnE
    • Lynd LR, Zyl WHV, McBride JE, Laser M. Consolidated bioprocessing of cellulosic biomass: an update. Curr Opin Biotechnol. 2005;16(5):577-83. doi: 10.1016/j.copbio.2005.08.009.
    • (2005) Curr Opin Biotechnol. , vol.16 , Issue.5 , pp. 577-583
    • Lynd, L.R.1    Zyl, W.H.V.2    McBride, J.E.3    Laser, M.4
  • 3
    • 0033167973 scopus 로고    scopus 로고
    • The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides
    • 1:STN:280:DyaK1Mzit1ejuw%3D%3D
    • Shoham Y, Lamed R, Bayer EA. The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides. Trends Microbiol. 1999;7(7):275-81.
    • (1999) Trends Microbiol , vol.7 , Issue.7 , pp. 275-281
    • Shoham, Y.1    Lamed, R.2    Bayer, E.A.3
  • 4
    • 0024404585 scopus 로고
    • Fermentation of cellulosic substrates in batch and continuous culture by Clostridium thermocellum
    • 1:CAS:528:DyaK3cXjsVeqsg%3D%3D
    • Lynd LR, Grethlein HE, Wolkin RH. Fermentation of cellulosic substrates in batch and continuous culture by Clostridium thermocellum. Appl Environ Microbiol. 1989;55(12):3131-9.
    • (1989) Appl Environ Microbiol , vol.55 , Issue.12 , pp. 3131-3139
    • Lynd, L.R.1    Grethlein, H.E.2    Wolkin, R.H.3
  • 6
    • 83255174918 scopus 로고    scopus 로고
    • High ethanol titers from cellulose using metabolically engineered thermophilic, anaerobic microbes
    • 1:CAS:528:DC%2BC3MXhs1ChurzP
    • Argyros DA, Tripathi SA, Barrett TF, Rogers SR, Feinberg LF, Olson DG, et al. High ethanol titers from cellulose using metabolically engineered thermophilic, anaerobic microbes. Appl Environ Microbiol. 2011;77:8288-94. doi: 10.1128/aem.00646-11.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 8288-8294
    • Argyros, D.A.1    Tripathi, S.A.2    Barrett, T.F.3    Rogers, S.R.4    Feinberg, L.F.5    Olson, D.G.6
  • 7
    • 78049278436 scopus 로고    scopus 로고
    • Development of pyrF-based genetic system for targeted gene deletion in Clostridium thermocellum and creation of a pta mutant
    • 1:CAS:528:DC%2BC3cXhtlartr7E
    • Tripathi SA, Olson DG, Argyros DA, Miller BB, Barrett TF, Murphy DM, et al. Development of pyrF-based genetic system for targeted gene deletion in Clostridium thermocellum and creation of a pta mutant. Appl Environ Microbiol. 2010;76:6591-9.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 6591-6599
    • Tripathi, S.A.1    Olson, D.G.2    Argyros, D.A.3    Miller, B.B.4    Barrett, T.F.5    Murphy, D.M.6
  • 8
    • 84901754653 scopus 로고    scopus 로고
    • Consolidated bioprocessing of transgenic switchgrass by an engineered and evolved Clostridium thermocellum strain
    • Yee KL, Rodriguez M Jr, Thompson OA, Fu C, Wang ZY, Davison BH, et al. Consolidated bioprocessing of transgenic switchgrass by an engineered and evolved Clostridium thermocellum strain. Biotechnol Biofuels. 2014;7:75. doi: 10.1186/1754-6834-7-75.
    • (2014) Biotechnol Biofuels , vol.7 , pp. 75
    • Yee, K.L.1    Rodriguez, M.2    Thompson, O.A.3    Fu, C.4    Wang, Z.Y.5    Davison, B.H.6
  • 9
    • 84871402263 scopus 로고    scopus 로고
    • Redirecting carbon flux through exogenous pyruvate kinase to achieve high ethanol yields in Clostridium thermocellum
    • 1:CAS:528:DC%2BC3sXnvFKktg%3D%3D
    • Deng Y, Olson DG, Zhou J, Herring CD, Joe Shaw A, Lynd LR. Redirecting carbon flux through exogenous pyruvate kinase to achieve high ethanol yields in Clostridium thermocellum. Metabolic Eng. 2013;15:151-8. doi: 10.1016/j.ymben.2012.11.006.
    • (2013) Metabolic Eng. , vol.15 , pp. 151-158
    • Deng, Y.1    Olson, D.G.2    Zhou, J.3    Herring, C.D.4    Joe Shaw, A.5    Lynd, L.R.6
  • 10
    • 84988878111 scopus 로고    scopus 로고
    • The exometabolome of Clostridium thermocellum reveals overflow metabolism at high cellulose loading
    • Holwerda E, Thorne P, Olson D, Amador-Noguez D, Engle N, Tschaplinski T, et al. The exometabolome of Clostridium thermocellum reveals overflow metabolism at high cellulose loading. Biotechnol Biofuels. 2014;7(1):155.
    • (2014) Biotechnol Biofuels , vol.7 , Issue.1 , pp. 155
    • Holwerda, E.1    Thorne, P.2    Olson, D.3    Amador-Noguez, D.4    Engle, N.5    Tschaplinski, T.6
  • 11
    • 84879230274 scopus 로고    scopus 로고
    • Characterization of Clostridium thermocellum strains with disrupted fermentation end-product pathways
    • 1:CAS:528:DC%2BC3sXptlKks7g%3D
    • van der Veen D, Lo J, Brown SD, Johnson CM, Tschaplinski TJ, Martin M, et al. Characterization of Clostridium thermocellum strains with disrupted fermentation end-product pathways. J Ind Microbiol Biotechnol. 2013;40:725-34. doi: 10.1007/s10295-013-1275-5.
    • (2013) J Ind Microbiol Biotechnol , vol.40 , pp. 725-734
    • Van Der Veen, D.1    Lo, J.2    Brown, S.D.3    Johnson, C.M.4    Tschaplinski, T.J.5    Martin, M.6
  • 12
    • 82455199199 scopus 로고    scopus 로고
    • End-product induced metabolic shifts in Clostridium thermocellum ATCC 27405
    • 1:CAS:528:DC%2BC3MXhtFKhsrjN
    • Rydzak T, Levin DB, Cicek N, Sparling R. End-product induced metabolic shifts in Clostridium thermocellum ATCC 27405. Appl Microbiol Biotechnol. 2011;92(1):199-209. doi: 10.1007/s00253-011-3511-0.
    • (2011) Appl Microbiol Biotechnol , vol.92 , Issue.1 , pp. 199-209
    • Rydzak, T.1    Levin, D.B.2    Cicek, N.3    Sparling, R.4
  • 13
    • 84903640402 scopus 로고    scopus 로고
    • Insights into electron flux through manipulation of fermentation conditions and assessment of protein expression profiles in Clostridium thermocellum
    • 1:CAS:528:DC%2BC2cXotFymtLo%3D
    • Rydzak T, Grigoryan M, Cunningham Z, Krokhin O, Ezzati P, Cicek N, et al. Insights into electron flux through manipulation of fermentation conditions and assessment of protein expression profiles in Clostridium thermocellum. Appl Microbiol Biotechnol. 2014;98(14):6497-510. doi: 10.1007/s00253-014-5798-0.
    • (2014) Appl Microbiol Biotechnol , vol.98 , Issue.14 , pp. 6497-6510
    • Rydzak, T.1    Grigoryan, M.2    Cunningham, Z.3    Krokhin, O.4    Ezzati, P.5    Cicek, N.6
  • 14
    • 84888616602 scopus 로고    scopus 로고
    • Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass
    • Wilson CM, Rodriguez M Jr, Johnson CM, Martin SL, Chu TM, Wolfinger RD, et al. Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass. Biotechnol Biofuels. 2013;6:179.
    • (2013) Biotechnol Biofuels , vol.6 , pp. 179
    • Wilson, C.M.1    Rodriguez, M.2    Johnson, C.M.3    Martin, S.L.4    Chu, T.M.5    Wolfinger, R.D.6
  • 15
    • 84883709020 scopus 로고    scopus 로고
    • Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress
    • 1:CAS:528:DC%2BC3sXhvVegsrfE
    • Wilson CM, Yang S, Rodriguez M Jr, Ma Q, Johnson CM, Dice L, et al. Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress. Biotechnol Biofuels. 2013;6:131.
    • (2013) Biotechnol Biofuels , vol.6 , pp. 131
    • Wilson, C.M.1    Yang, S.2    Rodriguez, M.3    Ma, Q.4    Johnson, C.M.5    Dice, L.6
  • 16
    • 84867729815 scopus 로고    scopus 로고
    • Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress
    • 1:CAS:528:DC%2BC38Xhslaju7zE
    • Yang S, Giannone RJ, Dice L, Yang ZK, Engle NL, Tschaplinski TJ, et al. Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress. BMC Genom. 2012;13(1):336. doi: 10.1186/1471-2164-13-336.
    • (2012) BMC Genom , vol.13 , Issue.1 , pp. 336
    • Yang, S.1    Giannone, R.J.2    Dice, L.3    Yang, Z.K.4    Engle, N.L.5    Tschaplinski, T.J.6
  • 17
    • 84908556242 scopus 로고    scopus 로고
    • Transcriptomic analysis of Clostridium thermocellum Populus hydrolysate-tolerant mutant strain shows increased cellular efficiency in response to Populus hydrolysate compared to the wild type strain
    • Linville JL, Rodriguez M, Brown SD, Mielenz JR, Cox CD. Transcriptomic analysis of Clostridium thermocellum Populus hydrolysate-tolerant mutant strain shows increased cellular efficiency in response to Populus hydrolysate compared to the wild type strain. BMC Microbiol. 2014;14(1):215. doi: 10.1186/s12866-014-0215-5.
    • (2014) BMC Microbiol , vol.14 , Issue.1 , pp. 215
    • Linville, J.L.1    Rodriguez, M.2    Brown, S.D.3    Mielenz, J.R.4    Cox, C.D.5
  • 18
    • 26444521691 scopus 로고    scopus 로고
    • Global transcriptome analysis of Shewanella oneidensis MR-1 exposed to different terminal electron acceptors
    • 1:CAS:528:DC%2BD2MXhtFantb3E
    • Beliaev AS, Klingeman DM, Klappenbach JA, Wu L, Romine MF, Tiedje JM, et al. Global transcriptome analysis of Shewanella oneidensis MR-1 exposed to different terminal electron acceptors. J Bacteriol. 2005;187(20):7138-45. doi: 10.1128/jb.187.20.7138-7145.2005.
    • (2005) J Bacteriol , vol.187 , Issue.20 , pp. 7138-7145
    • Beliaev, A.S.1    Klingeman, D.M.2    Klappenbach, J.A.3    Wu, L.4    Romine, M.F.5    Tiedje, J.M.6
  • 19
    • 84860367333 scopus 로고    scopus 로고
    • Global transcriptional changes of Clostridium acetobutylicum cultures with increased butanol: acetone ratios
    • Honicke D, Janssen H, Grimmler C, Ehrenreich A, Lütke-Eversloh T. Global transcriptional changes of Clostridium acetobutylicum cultures with increased butanol: acetone ratios. New Biotechnol. 2012;29(4):485-93.
    • (2012) New Biotechnol , vol.29 , Issue.4 , pp. 485-493
    • Honicke, D.1    Janssen, H.2    Grimmler, C.3    Ehrenreich, A.4    Lütke-Eversloh, T.5
  • 20
    • 84863285072 scopus 로고    scopus 로고
    • Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex
    • 1:CAS:528:DC%2BC38XjtV2isLc%3D
    • Ravcheev DA, Li X, Latif H, Zengler K, Leyn SA, Korostelev YD, et al. Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex. J Bacteriol. 2012;194:1145-57. doi: 10.1128/jb.06412-11.
    • (2012) J Bacteriol , vol.194 , pp. 1145-1157
    • Ravcheev, D.A.1    Li, X.2    Latif, H.3    Zengler, K.4    Leyn, S.A.5    Korostelev, Y.D.6
  • 21
    • 84928350316 scopus 로고    scopus 로고
    • Rex (encoded by DVU-0916) in Desulfovibrio vulgaris Hildenborough is a repressor of sulfate adenylyl transferase and is Regulated by NADH
    • 1:CAS:528:DC%2BC2cXitFOksbbP
    • Christensen GA, Zane GM, Kazakov AE, Li X, Rodionov DA, Novichkov PS, et al. Rex (encoded by DVU-0916) in Desulfovibrio vulgaris Hildenborough is a repressor of sulfate adenylyl transferase and is Regulated by NADH. J Bacteriol. 2015;197:29-39. doi: 10.1128/jb.02083-14.
    • (2015) J Bacteriol , vol.197 , pp. 29-39
    • Christensen, G.A.1    Zane, G.M.2    Kazakov, A.E.3    Li, X.4    Rodionov, D.A.5    Novichkov, P.S.6
  • 22
    • 84867579077 scopus 로고    scopus 로고
    • The redox-sensing protein Rex, a transcriptional regulator of solventogenesis in Clostridium acetobutylicum
    • 1:CAS:528:DC%2BC38XhsVOqsbrI
    • Wietzke M, Bahl H. The redox-sensing protein Rex, a transcriptional regulator of solventogenesis in Clostridium acetobutylicum. Appl Microbiol Biotechnol. 2012;96(3):749-61. doi: 10.1007/s00253-012-4112-2.
    • (2012) Appl Microbiol Biotechnol , vol.96 , Issue.3 , pp. 749-761
    • Wietzke, M.1    Bahl, H.2
  • 24
    • 33750026174 scopus 로고    scopus 로고
    • Unravelling carbon metabolism in anaerobic cellulolytic bacteria
    • 1:CAS:528:DC%2BD28XmvF2mtrY%3D
    • Desvaux M. Unravelling carbon metabolism in anaerobic cellulolytic bacteria. Biotechnol Prog. 2006;22(5):1229-38. doi: 10.1021/bp060016e.
    • (2006) Biotechnol Prog , vol.22 , Issue.5 , pp. 1229-1238
    • Desvaux, M.1
  • 25
    • 0031888938 scopus 로고    scopus 로고
    • Metabolism of cellobiose by Clostridium cellulolyticum growing in continuous culture: evidence for decreased NADH reoxidation as a factor limiting growth
    • 1:CAS:528:DyaK1cXhtlantLg%3D
    • Payot S, Guedon E, Cailliez C, Gelhaye E, Petitdemange H. Metabolism of cellobiose by Clostridium cellulolyticum growing in continuous culture: evidence for decreased NADH reoxidation as a factor limiting growth. Microbiol. 1998;144(2):375-84. doi: 10.1099/00221287-144-2-375.
    • (1998) Microbiol. , vol.144 , Issue.2 , pp. 375-384
    • Payot, S.1    Guedon, E.2    Cailliez, C.3    Gelhaye, E.4    Petitdemange, H.5
  • 26
    • 84857912747 scopus 로고    scopus 로고
    • Metabolic control of Clostridium thermocellum via inhibition of hydrogenase activity and the glucose transport rate
    • 1:CAS:528:DC%2BC38XitVGnsL4%3D
    • Li H-F, Knutson BL, Nokes SE, Lynn BC, Flythe MD. Metabolic control of Clostridium thermocellum via inhibition of hydrogenase activity and the glucose transport rate. Appl Microbiol Biotechnol. 2012;93(4):1777-84. doi: 10.1007/s00253-011-3812-3.
    • (2012) Appl Microbiol Biotechnol , vol.93 , Issue.4 , pp. 1777-1784
    • Li, H.-F.1    Knutson, B.L.2    Nokes, S.E.3    Lynn, B.C.4    Flythe, M.D.5
  • 27
    • 0030007516 scopus 로고    scopus 로고
    • Influence of iron, phosphate and methyl viologen on glycerol fermentation of Clostridium butyricum
    • 1:CAS:528:DyaK28XitVCrtLg%3D
    • Reimann A, Biebl H, Deckwer WD. Influence of iron, phosphate and methyl viologen on glycerol fermentation of Clostridium butyricum. Appl Microbiol Biotechnol. 1996;45(1-2):47-50. doi: 10.1007/s002530050647.
    • (1996) Appl Microbiol Biotechnol , vol.45 , Issue.1-2 , pp. 47-50
    • Reimann, A.1    Biebl, H.2    Deckwer, W.D.3
  • 28
    • 0023001192 scopus 로고
    • Alcohol production by Clostridium acetobutylicum induced by methyl viologen
    • 1:CAS:528:DyaL2sXhsFCksbk%3D
    • Rao G, Mutharasan R. Alcohol production by Clostridium acetobutylicum induced by methyl viologen. Biotechnol Lett. 1986;8(12):893-6. doi: 10.1007/bf01078655.
    • (1986) Biotechnol Lett , vol.8 , Issue.12 , pp. 893-896
    • Rao, G.1    Mutharasan, R.2
  • 29
    • 0023260421 scopus 로고
    • Altered electron flow in continuous cultures of Clostridium acetobutylicum induced by viologen dyes
    • 1:CAS:528:DyaL2sXksFOgu7s%3D
    • Rao G, Mutharasan R. Altered electron flow in continuous cultures of Clostridium acetobutylicum induced by viologen dyes. Appl Environ Microbiol. 1987;53(6):1232-5.
    • (1987) Appl Environ Microbiol , vol.53 , Issue.6 , pp. 1232-1235
    • Rao, G.1    Mutharasan, R.2
  • 30
    • 0015953395 scopus 로고
    • A convenient electrochemical preparation of reduced methyl viologen and a kinetic study of the reaction with oxygen using an anaerobic stopped-flow apparatus
    • 1:CAS:528:DyaE2cXkvVOmsb4%3D
    • Thorneley RNF. A convenient electrochemical preparation of reduced methyl viologen and a kinetic study of the reaction with oxygen using an anaerobic stopped-flow apparatus. Biochim Biophys Acta (BBA) Bioenerg. 1974;333(3):487-96. doi: 10.1016/0005-2728(74)90133-9.
    • (1974) Biochim Biophys Acta (BBA) Bioenerg , vol.333 , Issue.3 , pp. 487-496
    • Thorneley, R.N.F.1
  • 31
    • 0001047820 scopus 로고
    • Structural studies of iron-sulfur proteins
    • 1:CAS:528:DyaE3MXmtVyisA%3D%3D
    • Tsibris JCM, Woody RW. Structural studies of iron-sulfur proteins. Coordination Chem Rev. 1970;5(4):417-58. doi: 10.1016/S0010-8545(00)80100-9.
    • (1970) Coordination Chem Rev. , vol.5 , Issue.4 , pp. 417-458
    • Tsibris, J.C.M.1    Woody, R.W.2
  • 32
    • 0015427027 scopus 로고
    • Nitrogenase of Klebsiella pneumoniae: interaction with viologen dyes as measured by acetylene reduction
    • 1:CAS:528:DyaE3sXlsVOntA%3D%3D
    • Ware DA. Nitrogenase of Klebsiella pneumoniae: interaction with viologen dyes as measured by acetylene reduction. Biochem J. 1972;130(1):301-2.
    • (1972) Biochem J , vol.130 , Issue.1 , pp. 301-302
    • Ware, D.A.1
  • 33
    • 0015795808 scopus 로고
    • Preparation and characterization of a soluble nitrate reductase from Azotobacter chroococcum
    • 1:CAS:528:DyaE3sXkvVylsbY%3D
    • Guerrero MG, MaVega J, Leadbener E, Losada M. Preparation and characterization of a soluble nitrate reductase from Azotobacter chroococcum. Arch Mikrobiol. 1973;91:287-304.
    • (1973) Arch Mikrobiol , vol.91 , pp. 287-304
    • Guerrero, M.G.1    MaVega, J.2    Leadbener, E.3    Losada, M.4
  • 34
    • 33747082622 scopus 로고    scopus 로고
    • The phenazine pyocyanin is a terminal signalling factor in the quorum sensing network of Pseudomonas aeruginosa
    • 1:CAS:528:DC%2BD28XhtlWqtr%2FM
    • Dietrich LEP, Price-Whelan A, Petersen A, Whiteley M, Newman DK. The phenazine pyocyanin is a terminal signalling factor in the quorum sensing network of Pseudomonas aeruginosa. Mol Microbiol. 2006;61(5):1308-21. doi: 10.1111/j.1365-2958.2006.05306.x.
    • (2006) Mol Microbiol , vol.61 , Issue.5 , pp. 1308-1321
    • Dietrich, L.E.P.1    Price-Whelan, A.2    Petersen, A.3    Whiteley, M.4    Newman, D.K.5
  • 35
    • 79951789722 scopus 로고    scopus 로고
    • The SoxRS response of Escherichia coli is directly activated by redox-cycling drugs rather than by superoxide
    • 1:CAS:528:DC%2BC3MXjvFWgsLk%3D
    • Gu M, Imlay JA. The SoxRS response of Escherichia coli is directly activated by redox-cycling drugs rather than by superoxide. Mol Microbiol. 2011;79(5):1136-50. doi: 10.1111/j.1365-2958.2010.07520.x.
    • (2011) Mol Microbiol , vol.79 , Issue.5 , pp. 1136-1150
    • Gu, M.1    Imlay, J.A.2
  • 36
    • 84925357278 scopus 로고    scopus 로고
    • Reassessment of the transhydrogenase 'malate shunt' in Clostridium thermocellum ATCC 27405 through kinetic characterization of malic enzyme and malate dehydrogenase
    • 1:CAS:528:DC%2BC2MXkvFShu7c%3D
    • Taillefer M, Rydzak T, Levin DB, Oresnik IJ, Sparling R. Reassessment of the transhydrogenase 'malate shunt' in Clostridium thermocellum ATCC 27405 through kinetic characterization of malic enzyme and malate dehydrogenase. Appl Environ Microbiol. 2015;81:2423-32. doi: 10.1128/aem.03360-14.
    • (2015) Appl Environ Microbiol , vol.81 , pp. 2423-2432
    • Taillefer, M.1    Rydzak, T.2    Levin, D.B.3    Oresnik, I.J.4    Sparling, R.5
  • 37
    • 0022548522 scopus 로고
    • Inorganic nitrogen metabolism in two cellulose-degrading Clostridia
    • 1:CAS:528:DyaL2sXltlSlsbo%3D
    • Bogdahn M, Kleiner D. Inorganic nitrogen metabolism in two cellulose-degrading Clostridia. Arch Microbiol. 1986;145(2):159-61. doi: 10.1007/bf00446774.
    • (1986) Arch Microbiol , vol.145 , Issue.2 , pp. 159-161
    • Bogdahn, M.1    Kleiner, D.2
  • 38
    • 84880942297 scopus 로고    scopus 로고
    • Ammonia assimilation in rumen bacteria: a review
    • Pengpeng W, Tan Z. Ammonia assimilation in rumen bacteria: a review. Anim Biotechnol. 2013;24(2):107-28. doi: 10.1080/10495398.2012.756402.
    • (2013) Anim Biotechnol. , vol.24 , Issue.2 , pp. 107-128
    • Pengpeng, W.1    Tan, Z.2
  • 39
    • 84878799648 scopus 로고    scopus 로고
    • The role of AmtB, GlnK and glutamine synthetase in regulation of of transcription factor TnrA in Bacillus subtilis
    • Fedorova KP, Tarasov NV, Khalitova AV, Iljinskaya ON, Barabanshchikov BI, Kayumov AR. The role of AmtB, GlnK and glutamine synthetase in regulation of of transcription factor TnrA in Bacillus subtilis. Cell Tiss Biol. 2013;7(3):297-301. doi: 10.1134/s1990519x13020041.
    • (2013) Cell Tiss Biol. , vol.7 , Issue.3 , pp. 297-301
    • Fedorova, K.P.1    Tarasov, N.V.2    Khalitova, A.V.3    Iljinskaya, O.N.4    Barabanshchikov, B.I.5    Kayumov, A.R.6
  • 40
    • 0026463806 scopus 로고
    • Differential expression of a Clostridium acetobutylicum antisense RNA: implications for regulation of glutamine synthetase
    • 1:CAS:528:DyaK3sXnsVKlsA%3D%3D
    • Fierro-Monti IP, Reid SJ, Woods DR. Differential expression of a Clostridium acetobutylicum antisense RNA: implications for regulation of glutamine synthetase. J Bacteriol. 1992;174(23):7642-7.
    • (1992) J Bacteriol , vol.174 , Issue.23 , pp. 7642-7647
    • Fierro-Monti, I.P.1    Reid, S.J.2    Woods, D.R.3
  • 41
    • 84872155580 scopus 로고    scopus 로고
    • Nitrogen and sulfur requirements for Clostridium thermocellum and Caldicellulosiruptor bescii on cellulosic substrates in minimal nutrient media
    • 1:CAS:528:DC%2BC3sXislWgtr0%3D
    • Kridelbaugh DM, Nelson J, Engle NL, Tschaplinski TJ, Graham DE. Nitrogen and sulfur requirements for Clostridium thermocellum and Caldicellulosiruptor bescii on cellulosic substrates in minimal nutrient media. Bioresour Technol. 2013;130:125-35. doi: 10.1016/j.biortech.2012.12.006.
    • (2013) Bioresour Technol. , vol.130 , pp. 125-135
    • Kridelbaugh, D.M.1    Nelson, J.2    Engle, N.L.3    Tschaplinski, T.J.4    Graham, D.E.5
  • 42
    • 0036200210 scopus 로고    scopus 로고
    • Regulation of heme biosynthesis in non-phototrophic bacteria
    • 1:CAS:528:DC%2BD38XisFGiurY%3D
    • Schobert M, Jahn D. Regulation of heme biosynthesis in non-phototrophic bacteria. J Mol Microbiol Biotechnol. 2002;4(3):287-94.
    • (2002) J Mol Microbiol Biotechnol , vol.4 , Issue.3 , pp. 287-294
    • Schobert, M.1    Jahn, D.2
  • 43
    • 0028948927 scopus 로고
    • Regulation of the hemA gene during 5-aminolevulinic acid formation in Pseudomonas aeruginosa
    • 1:CAS:528:DyaK2MXktlGis7s%3D
    • Hungerer C, Troup B, Römling U, Jahn D. Regulation of the hemA gene during 5-aminolevulinic acid formation in Pseudomonas aeruginosa. J Bacteriol. 1995;177(6):1435-43.
    • (1995) J Bacteriol , vol.177 , Issue.6 , pp. 1435-1443
    • Hungerer, C.1    Troup, B.2    Römling, U.3    Jahn, D.4
  • 44
    • 0017814435 scopus 로고
    • The kinetics of methyl viologen oxidation and reduction by the hydrogenase from Clostridium pasteurianum
    • 1:CAS:528:DyaE1cXltVakt7s%3D
    • Erbes DL, Burris RH. The kinetics of methyl viologen oxidation and reduction by the hydrogenase from Clostridium pasteurianum. Biochim Biophys Acta (BBA) Enzymol. 1978;525(1):45-54. doi: 10.1016/0005-2744(78)90198-5.
    • (1978) Biochim Biophys Acta (BBA) Enzymol. , vol.525 , Issue.1 , pp. 45-54
    • Erbes, D.L.1    Burris, R.H.2
  • 45
    • 0019505202 scopus 로고
    • Kinetics of methyl viologen reduction by hydrogen catalyzed by hydrogenase from Desulfovibrio vulgaris
    • 1:CAS:528:DyaL3MXhslSiu7Y%3D
    • Okura I, Nakamura K-I, Nakamura S. Kinetics of methyl viologen reduction by hydrogen catalyzed by hydrogenase from Desulfovibrio vulgaris. J Inorg Biochem. 1981;14(2):155-61. doi: 10.1016/S0162-0134(00)80036-7.
    • (1981) J Inorg Biochem. , vol.14 , Issue.2 , pp. 155-161
    • Okura, I.1    Nakamura, K.-I.2    Nakamura, S.3
  • 46
    • 84866481432 scopus 로고    scopus 로고
    • Proteomic analysis of Clostridium thermocellum core metabolism: relative protein expression profiles and growth phase-dependent changes in protein expression
    • 1:CAS:528:DC%2BC3sXjsFWjsQ%3D%3D
    • Rydzak T, McQueen P, Krokhin O, Spicer V, Ezzati P, Dwivedi R, et al. Proteomic analysis of Clostridium thermocellum core metabolism: relative protein expression profiles and growth phase-dependent changes in protein expression. BMC Microbiol. 2012;12(1):214.
    • (2012) BMC Microbiol , vol.12 , Issue.1 , pp. 214
    • Rydzak, T.1    McQueen, P.2    Krokhin, O.3    Spicer, V.4    Ezzati, P.5    Dwivedi, R.6
  • 47
    • 62849108865 scopus 로고    scopus 로고
    • Growth phase-dependant enzyme profile of pyruvate catabolism and end-product formation in Clostridium thermocellum ATCC 27405
    • 1:CAS:528:DC%2BD1MXjvVWjsbg%3D
    • Rydzak T, Levin DB, Cicek N, Sparling R. Growth phase-dependant enzyme profile of pyruvate catabolism and end-product formation in Clostridium thermocellum ATCC 27405. J Biotechnol. 2009;140(3-4):169-75. doi: 10.1016/j.jbiotec.2009.01.022.
    • (2009) J Biotechnol , vol.140 , Issue.3-4 , pp. 169-175
    • Rydzak, T.1    Levin, D.B.2    Cicek, N.3    Sparling, R.4
  • 48
    • 84907851997 scopus 로고    scopus 로고
    • 2 sparging of open-batch cultures of Clostridium thermocellum ATCC 27405
    • 1:CAS:528:DC%2BC2cXhtlWjs7c%3D
    • 2 sparging of open-batch cultures of Clostridium thermocellum ATCC 27405. Appl Microbiol Biotechnol. 2014;98:2829-40. doi: 10.1007/s00253-013-5500-y.
    • (2014) Appl Microbiol Biotechnol , vol.98 , pp. 2829-2840
    • Carere, C.1    Rydzak, T.2    Cicek, N.3    Levin, D.4    Sparling, R.5
  • 49
    • 48249088897 scopus 로고    scopus 로고
    • Pyruvate catabolism and hydrogen synthesis pathway genes of Clostridium thermocellum ATCC 27405
    • 1:CAS:528:DC%2BD1cXhtF2qt7bF
    • Carere CR, Kalia V, Sparling R, Cicek N, Levin DB. Pyruvate catabolism and hydrogen synthesis pathway genes of Clostridium thermocellum ATCC 27405. Ind J Microbiol. 2008;48(2):252-66. doi: 10.1007/s12088-008-0036-z.
    • (2008) Ind J Microbiol. , vol.48 , Issue.2 , pp. 252-266
    • Carere, C.R.1    Kalia, V.2    Sparling, R.3    Cicek, N.4    Levin, D.B.5
  • 50
    • 84860367403 scopus 로고    scopus 로고
    • Regulation of hydrogenase gene expression
    • Hunter CN, Daldal F, Thurnauer M, Beatty JT, editors The Netherlands: Springer
    • Vignais PM. Regulation of hydrogenase gene expression. In: Hunter CN, Daldal F, Thurnauer M, Beatty JT, editors. The purple phototrophic bacteria. Advances in photosynthesis and respiration. The Netherlands: Springer; 2009. p. 743-57.
    • (2009) The purple phototrophic bacteria. Advances in photosynthesis and respiration , pp. 743-757
    • Vignais, P.M.1
  • 51
    • 33749034741 scopus 로고    scopus 로고
    • Regulation of uptake hydrogenase and effects of hydrogen utilization on gene expression in Rhodopseudomonas palustris
    • 1:CAS:528:DC%2BD28Xpt1aksLg%3D
    • Rey FE, Oda Y, Harwood CS. Regulation of uptake hydrogenase and effects of hydrogen utilization on gene expression in Rhodopseudomonas palustris. J Bacteriol. 2006;188(17):6143-52. doi: 10.1128/jb.00381-06.
    • (2006) J Bacteriol , vol.188 , Issue.17 , pp. 6143-6152
    • Rey, F.E.1    Oda, Y.2    Harwood, C.S.3
  • 52
    • 84864914301 scopus 로고    scopus 로고
    • Formation and characterization of non-growth states in Clostridium thermocellum: spores and L-forms
    • 1:CAS:528:DC%2BC38XhslWjtrzK
    • Mearls EB, Izquierdo JA, Lynd LR. Formation and characterization of non-growth states in Clostridium thermocellum: spores and L-forms. BMC Microbiol. 2012;12(1):180.
    • (2012) BMC Microbiol , vol.12 , Issue.1 , pp. 180
    • Mearls, E.B.1    Izquierdo, J.A.2    Lynd, L.R.3
  • 53
    • 84902967919 scopus 로고    scopus 로고
    • The identification of four histidine kinases that influence sporulation in Clostridium thermocellum
    • 1:CAS:528:DC%2BC2cXhtlCltLrL
    • Mearls EB, Lynd LR. The identification of four histidine kinases that influence sporulation in Clostridium thermocellum. Anaerobe. 2014;28:109-19. doi: 10.1016/j.anaerobe.2014.06.004.
    • (2014) Anaerobe. , vol.28 , pp. 109-119
    • Mearls, E.B.1    Lynd, L.R.2
  • 54
    • 44949173182 scopus 로고    scopus 로고
    • Mutations in the scaffoldin gene, cipA, of Clostridium thermocellum with impaired cellulosome formation and cellulose hydrolysis: insertions of a new transposable element, IS1447, and implications for cellulase synergism on crystalline cellulose
    • 1:CAS:528:DC%2BD1cXnt1equ70%3D
    • Zverlov VV, Klupp M, Krauss J, Schwarz WH. Mutations in the scaffoldin gene, cipA, of Clostridium thermocellum with impaired cellulosome formation and cellulose hydrolysis: insertions of a new transposable element, IS1447, and implications for cellulase synergism on crystalline cellulose. J Bacteriol. 2008;190(12):4321-7. doi: 10.1128/jb.00097-08.
    • (2008) J Bacteriol , vol.190 , Issue.12 , pp. 4321-4327
    • Zverlov, V.V.1    Klupp, M.2    Krauss, J.3    Schwarz, W.H.4
  • 55
    • 84899874115 scopus 로고    scopus 로고
    • Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia
    • Brown SD, Nagaraju S, Utturkar SM, De Tissera S, Segovia S, Mitchell W, et al. Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia. Biotechnol Biofuels. 2014;7:40.
    • (2014) Biotechnol Biofuels , vol.7 , pp. 40
    • Brown, S.D.1    Nagaraju, S.2    Utturkar, S.M.3    De Tissera, S.4    Segovia, S.5    Mitchell, W.6
  • 56
    • 0034770083 scopus 로고    scopus 로고
    • Roles of thiol-redox pathways in bacteria
    • 1:CAS:528:DC%2BD3MXnslKjtrY%3D
    • Ritz D, Beckwith J. Roles of thiol-redox pathways in bacteria. Ann Rev Microbiol. 2001;55(1):21-48. doi: 10.1146/annurev.micro.55.1.21.
    • (2001) Ann Rev Microbiol. , vol.55 , Issue.1 , pp. 21-48
    • Ritz, D.1    Beckwith, J.2
  • 57
    • 0037439184 scopus 로고    scopus 로고
    • Quantification of cell and cellulase mass concentrations during anaerobic cellulose fermentation: development of an enzyme-linked immunosorbent assay-based method with application to Clostridium thermocellum batch cultures
    • Zhang Y, Lynd LR. Quantification of cell and cellulase mass concentrations during anaerobic cellulose fermentation: development of an enzyme-linked immunosorbent assay-based method with application to Clostridium thermocellum batch cultures. Anal Chem. 2002;75(2):219-27. doi: 10.1021/ac020271n.
    • (2002) Anal Chem , vol.75 , Issue.2 , pp. 219-227
    • Zhang, Y.1    Lynd, L.R.2
  • 58
    • 75849133666 scopus 로고    scopus 로고
    • Pathway tools version 13.0: integrated software for pathway/genome informatics and systems biology
    • 1:CAS:528:DC%2BC3cXhtFeisb4%3D
    • Karp PD, Paley SM, Krummenacker M, Latendresse M, Dale JM, Lee TJ, et al. Pathway tools version 13.0: integrated software for pathway/genome informatics and systems biology. Brief Bioinform. 2010;11(1):40-79.
    • (2010) Brief Bioinform. , vol.11 , Issue.1 , pp. 40-79
    • Karp, P.D.1    Paley, S.M.2    Krummenacker, M.3    Latendresse, M.4    Dale, J.M.5    Lee, T.J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.