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Volumn 7, Issue 12, 2015, Pages 6279-6290

Alphacoronaviruses detected in french bats are phylogeographically linked to coronaviruses of european bats

Author keywords

Alphacoronavirus; Bats; Coronavirus; Europe; Molecular characterization; Phylogenetic analysis; Phylogeographic analysis

Indexed keywords

RNA DIRECTED RNA POLYMERASE; VIRUS RNA;

EID: 84949496827     PISSN: None     EISSN: 19994915     Source Type: Journal    
DOI: 10.3390/v7122937     Document Type: Article
Times cited : (19)

References (47)
  • 2
    • 10944238037 scopus 로고    scopus 로고
    • Severe acute respiratory syndrome
    • [CrossRef] [PubMed]
    • Peiris, J.S.M.; Guan, Y.; Yuen, K.Y. Severe acute respiratory syndrome. Nat. Med. 2004, 10, S88-S97. [CrossRef] [PubMed]
    • (2004) Nat. Med , vol.10 , pp. S88-S97
    • Peiris, J.S.M.1    Guan, Y.2    Yuen, K.Y.3
  • 3
    • 84861307149 scopus 로고    scopus 로고
    • Discovery of seven novel Mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus
    • [PubMed]
    • Woo, P.C.Y.; Lau, S.K.P.; Lam, C.S.F.; Lau, C.C.Y.; Tsang, A.K.L.; Lau, J.H.N.; Bai, R.; Teng, J.L.L.; Tsang, C.C.C.; Wang, M.; et al. Discovery of seven novel Mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus. J. Virol. 2012, 86, 3995-4008. [PubMed]
    • (2012) J. Virol , vol.86 , pp. 3995-4008
    • Woo, P.C.Y.1    Lau, S.K.P.2    Lam, C.S.F.3    Lau, C.C.Y.4    Tsang, A.K.L.5    Lau, J.H.N.6    Bai, R.7    Teng, J.L.L.8    Tsang, C.C.C.9    Wang, M.10
  • 5
    • 70449578221 scopus 로고    scopus 로고
    • Evidence for Repeated Independent Evolution of Migration in the Largest Family of Bats
    • [CrossRef] [PubMed]
    • Bisson, I.-A.; Safi, K.; Holland, R.A. Evidence for Repeated Independent Evolution of Migration in the Largest Family of Bats. PLoS ONE 2009, 4, e7504. [CrossRef] [PubMed]
    • (2009) PLoS ONE , vol.4
    • Bisson, I.-A.1    Safi, K.2    Holland, R.A.3
  • 6
    • 84949501183 scopus 로고    scopus 로고
    • (accessed on 15 July 2015)
    • Protected Bat Species UNEP/EUROBATS. Available online: http://www.eurobats.org/about_eurobats/ protected_bat_species (accessed on 15 July 2015).
    • Protected Bat Species UNEP/EUROBATS
  • 7
    • 4344696179 scopus 로고    scopus 로고
    • Ageing studies on bats: A review
    • [CrossRef] [PubMed]
    • Brunet-Rossinni, A.K.; Austad, S.N. Ageing studies on bats: A review. Biogerontology 2004, 5, 211-222. [CrossRef] [PubMed]
    • (2004) Biogerontology , vol.5 , pp. 211-222
    • Brunet-Rossinni, A.K.1    Austad, S.N.2
  • 10
    • 77957923165 scopus 로고    scopus 로고
    • Three roads diverged? Routes to phylogeographic inference
    • [CrossRef] [PubMed]
    • Bloomquist, E.W.; Lemey, P.; Suchard, M.A. Three roads diverged? Routes to phylogeographic inference. Trends Ecol. Evol. 2010, 25, 626-632. [CrossRef] [PubMed]
    • (2010) Trends Ecol. Evol , vol.25 , pp. 626-632
    • Bloomquist, E.W.1    Lemey, P.2    Suchard, M.A.3
  • 11
    • 0034723385 scopus 로고    scopus 로고
    • AIDS as a zoonosis: Scientific and public health implications
    • [CrossRef] [PubMed]
    • Hahn, B.H.; Shaw, G.M.; de Cock, K.M.; Sharp, P.M. AIDS as a zoonosis: Scientific and public health implications. Science 2000, 287, 607-614. [CrossRef] [PubMed]
    • (2000) Science , vol.287 , pp. 607-614
    • Hahn, B.H.1    Shaw, G.M.2    de Cock, K.M.3    Sharp, P.M.4
  • 12
    • 78650639134 scopus 로고    scopus 로고
    • Phylogeography of the spring and fall waves of the H1N1/09 pandemic influenza virus in the United States
    • [CrossRef] [PubMed]
    • Nelson,M.I.; Tan, Y.; Ghedin, E.;Wentworth, D.E.; st George, K.; Edelman, L.; Beck, E.T.; Fan, J.; Lam, T.T.-Y.; Kumar, S.; et al. Phylogeography of the spring and fall waves of the H1N1/09 pandemic influenza virus in the United States. J. Virol. 2011, 85, 828-834. [CrossRef] [PubMed]
    • (2011) J. Virol , vol.85 , pp. 828-834
    • Nelson, M.I.1    Tan, Y.2    Ghedin, E.3    Wentworth, D.E.4    st George, K.5    Edelman, L.6    Beck, E.T.7    Fan, J.8    Lam, T.T.-Y.9    Kumar, S.10
  • 17
    • 84862181638 scopus 로고    scopus 로고
    • Alphacoronavirus detected in bats in the United Kingdom
    • [CrossRef] [PubMed]
    • August, T.A.; Mathews, F.; Nunn, M.A. Alphacoronavirus detected in bats in the United Kingdom. Vector Borne Zoonotic Dis. 2012, 12, 530-533. [CrossRef] [PubMed]
    • (2012) Vector Borne Zoonotic Dis , vol.12 , pp. 530-533
    • August, T.A.1    Mathews, F.2    Nunn, M.A.3
  • 18
    • 84887338067 scopus 로고    scopus 로고
    • Detection of coronaviruses in bats of various species in Italy
    • [CrossRef] [PubMed]
    • Lelli, D.; Papetti, A.; Sabelli, C.; Rosti, E.; Moreno, A.; Boniotti, M.B. Detection of coronaviruses in bats of various species in Italy. Viruses 2013, 5, 2679-2689. [CrossRef] [PubMed]
    • (2013) Viruses , vol.5 , pp. 2679-2689
    • Lelli, D.1    Papetti, A.2    Sabelli, C.3    Rosti, E.4    Moreno, A.5    Boniotti, M.B.6
  • 20
    • 84949511014 scopus 로고    scopus 로고
    • (accessed on 6 November 2015)
    • Dietz, C.; von Helversen, O.Available online: http://scholar.google.fr/scholar_url?url=http://www.resear chgate.net/profile/Christian_Dietz/publication/274838308_llustrated_Identification_key_to_the_Bats_of_ Europe_-_complete_pdf/links/552b56a60cf2779ab7930be7.pdf&hl=fr&sa=X&scisig=AAGBfm1eq39Y0IQQ R7Pv_3ffuC7mRbBiWw&nossl=1&oi=scholarr&ved=0CB4QgAMoADAAahUKEwj_84DXjPzIAhXH1hQK HWHaBkU (accessed on 6 November 2015).
    • Dietz, C.1    von Helversen, O.2
  • 21
    • 77953786835 scopus 로고    scopus 로고
    • Bat Guano Virome: Predominance of Dietary Viruses from Insects and Plants plus Novel Mammalian Viruses
    • [CrossRef] [PubMed]
    • Li, L.; Victoria, J.G.; Wang, C.; Jones, M.; Fellers, G.M.; Kunz, T.H.; Delwart, E. Bat Guano Virome: Predominance of Dietary Viruses from Insects and Plants plus Novel Mammalian Viruses. J. Virol. 2010, 84, 6955-6965. [CrossRef] [PubMed]
    • (2010) J. Virol , vol.84 , pp. 6955-6965
    • Li, L.1    Victoria, J.G.2    Wang, C.3    Jones, M.4    Fellers, G.M.5    Kunz, T.H.6    Delwart, E.7
  • 22
    • 84861397655 scopus 로고    scopus 로고
    • Metagenomic Analysis of Viruses from Bat Fecal Samples Reveals Many Novel Viruses in Insectivorous Bats in China
    • [CrossRef] [PubMed]
    • Ge, X.; Li, Y.; Yang, X.; Zhang, H.; Zhou, P.; Zhang, Y.; Shi, Z. Metagenomic Analysis of Viruses from Bat Fecal Samples Reveals Many Novel Viruses in Insectivorous Bats in China. J. Virol. 2012, 86, 4620-4630. [CrossRef] [PubMed]
    • (2012) J. Virol , vol.86 , pp. 4620-4630
    • Ge, X.1    Li, Y.2    Yang, X.3    Zhang, H.4    Zhou, P.5    Zhang, Y.6    Shi, Z.7
  • 23
    • 33947214129 scopus 로고    scopus 로고
    • Generic detection of coronaviruses and differentiation at the prototype strain level by reverse transcription-PCR and nonfluorescent low-density microarray
    • [CrossRef] [PubMed]
    • De Souza Luna, L.K.; Heiser, V.; Regamey, N.; Panning, M.; Drexler, J.F.; Mulangu, S.; Poon, L.; Baumgarte, S.; Haijema, B.J.; Kaiser, L.; et al. Generic detection of coronaviruses and differentiation at the prototype strain level by reverse transcription-PCR and nonfluorescent low-density microarray. J. Clin. Microbiol. 2007, 45, 1049-1052. [CrossRef] [PubMed]
    • (2007) J. Clin. Microbiol , vol.45 , pp. 1049-1052
    • De Souza Luna, L.K.1    Heiser, V.2    Regamey, N.3    Panning, M.4    Drexler, J.F.5    Mulangu, S.6    Poon, L.7    Baumgarte, S.8    Haijema, B.J.9    Kaiser, L.10
  • 24
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • [CrossRef] [PubMed]
    • Thompson, J.D.; Gibson, T.J.; Plewniak, F.; Jeanmougin, F.; Higgins, D.G. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25, 4876-4882. [CrossRef] [PubMed]
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 26
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • [CrossRef] [PubMed]
    • Guindon, S.; Dufayard, J.-F.; Lefort, V.; Anisimova, M.; Hordijk, W.; Gascuel, O. New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Syst. Biol. 2010, 59, 307-321. [CrossRef] [PubMed]
    • (2010) Syst. Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.-F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 27
    • 84949504441 scopus 로고    scopus 로고
    • (accessed on 15 July 2015)
    • ATGC: SMS. Available online: http://www.atgc-montpellier.fr/sms/ (accessed on 15 July 2015).
    • ATGC: SMS
  • 28
    • 0000461280 scopus 로고
    • Confidence Limits on Phylogenies: An Approach Using the Bootstrap
    • [CrossRef]
    • Felsenstein, J. Confidence Limits on Phylogenies: An Approach Using the Bootstrap. Evolution 1985, 39, 783-791. [CrossRef]
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 30
    • 19444377180 scopus 로고    scopus 로고
    • Circulation of genetically distinct contemporary human coronavirus OC43 strains
    • [CrossRef] [PubMed]
    • Vijgen, L.; Keyaerts, E.; Lemey, P.; Moës, E.; Li, S.; Vandamme, A.-M.; van Ranst, M. Circulation of genetically distinct contemporary human coronavirus OC43 strains. Virology 2005, 337, 85-92. [CrossRef] [PubMed]
    • (2005) Virology , vol.337 , pp. 85-92
    • Vijgen, L.1    Keyaerts, E.2    Lemey, P.3    Moës, E.4    Li, S.5    Vandamme, A.-M.6    van Ranst, M.7
  • 33
    • 41549123654 scopus 로고    scopus 로고
    • Human (non-severe acute respiratory syndrome) coronavirus infections in hospitalised children in France
    • [CrossRef] [PubMed]
    • Vabret, A.; Dina, J.; Gouarin, S.; Petitjean, J.; Tripey, V.; Brouard, J.; Freymuth, F. Human (non-severe acute respiratory syndrome) coronavirus infections in hospitalised children in France. J. Paediatr. Child Health 2008, 44, 176-181. [CrossRef] [PubMed]
    • (2008) J. Paediatr. Child Health , vol.44 , pp. 176-181
    • Vabret, A.1    Dina, J.2    Gouarin, S.3    Petitjean, J.4    Tripey, V.5    Brouard, J.6    Freymuth, F.7
  • 34
    • 77949532150 scopus 로고    scopus 로고
    • Intraspecies diversity of SARS-like coronaviruses in Rhinolophus sinicus and its implications for the origin of SARS coronaviruses in humans
    • [CrossRef] [PubMed]
    • Yuan, J.; Hon, C.-C.; Li, Y.;Wang, D.; Xu, G.; Zhang, H.; Zhou, P.; Poon, L.L.M.; Lam, T.T.-Y.; Leung, F.C.-C.; et al. Intraspecies diversity of SARS-like coronaviruses in Rhinolophus sinicus and its implications for the origin of SARS coronaviruses in humans. J. Gen. Virol. 2010, 91, 1058-1062. [CrossRef] [PubMed]
    • (2010) J. Gen. Virol , vol.91 , pp. 1058-1062
    • Yuan, J.1    Hon, C.-C.2    Li, Y.3    Wang, D.4    Xu, G.5    Zhang, H.6    Zhou, P.7    Poon, L.L.M.8    Lam, T.T.-Y.9    Leung, F.C.-C.10
  • 35
    • 0141889936 scopus 로고    scopus 로고
    • Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China
    • [CrossRef] [PubMed]
    • Guan, Y.; Zheng, B.J.; He, Y.Q.; Liu, X.L.; Zhuang, Z.X.; Cheung, C.L.; Luo, S.W.; Li, P.H.; Zhang, L.J.; Guan, Y.J.; et al. Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China. Science 2003, 302, 276-278. [CrossRef] [PubMed]
    • (2003) Science , vol.302 , pp. 276-278
    • Guan, Y.1    Zheng, B.J.2    He, Y.Q.3    Liu, X.L.4    Zhuang, Z.X.5    Cheung, C.L.6    Luo, S.W.7    Li, P.H.8    Zhang, L.J.9    Guan, Y.J.10
  • 36
    • 77957950482 scopus 로고    scopus 로고
    • Genomic Characterization of Severe Acute Respiratory Syndrome-Related Coronavirus in European Bats and Classification of Coronaviruses Based on Partial RNA-Dependent RNA Polymerase Gene Sequences
    • [CrossRef] [PubMed]
    • Drexler, J.F.; Gloza-Rausch, F.; Glende, J.; Corman, V.M.; Muth, D.; Goettsche, M.; Seebens, A.; Niedrig, M.; Pfefferle, S.; Yordanov, S.; et al. Genomic Characterization of Severe Acute Respiratory Syndrome-Related Coronavirus in European Bats and Classification of Coronaviruses Based on Partial RNA-Dependent RNA Polymerase Gene Sequences. J. Virol. 2010, 84, 11336-11349. [CrossRef] [PubMed]
    • (2010) J. Virol , vol.84 , pp. 11336-11349
    • Drexler, J.F.1    Gloza-Rausch, F.2    Glende, J.3    Corman, V.M.4    Muth, D.5    Goettsche, M.6    Seebens, A.7    Niedrig, M.8    Pfefferle, S.9    Yordanov, S.10
  • 39
    • 34848861643 scopus 로고    scopus 로고
    • Complete genome sequence of bat coronavirus HKU2 from Chinese horseshoe bats revealed a much smaller spike gene with a different evolutionary lineage from the rest of the genome
    • [CrossRef] [PubMed]
    • Lau, S.K.P.; Woo, P.C.Y.; Li, K.S.M.; Huang, Y.; Wang, M.; Lam, C.S.F.; Xu, H.; Guo, R.; Chan, K.-H.; Zheng, B.-J.; et al. Complete genome sequence of bat coronavirus HKU2 from Chinese horseshoe bats revealed a much smaller spike gene with a different evolutionary lineage from the rest of the genome. Virology 2007, 367, 428-439. [CrossRef] [PubMed]
    • (2007) Virology , vol.367 , pp. 428-439
    • Lau, S.K.P.1    Woo, P.C.Y.2    Li, K.S.M.3    Huang, Y.4    Wang, M.5    Lam, C.S.F.6    Xu, H.7    Guo, R.8    Chan, K.-H.9    Zheng, B.-J.10
  • 43
    • 84926671021 scopus 로고    scopus 로고
    • What do Pneumocystis organisms tell us about the phylogeography of their hosts? The case of the woodmouse Apodemus sylvaticus in continental Europe and western Mediterranean islands
    • [CrossRef] [PubMed]
    • Demanche, C.; Deville, M.; Michaux, J.; Barriel, V.; Pinçon, C.; Aliouat-Denis, C.M.; Pottier, M.; Noël, C.; Viscogliosi, E.; Aliouat, E.M.; et al. What do Pneumocystis organisms tell us about the phylogeography of their hosts? The case of the woodmouse Apodemus sylvaticus in continental Europe and western Mediterranean islands. PLoS ONE 2015, 10, e0120839. [CrossRef] [PubMed]
    • (2015) PLoS ONE , vol.10
    • Demanche, C.1    Deville, M.2    Michaux, J.3    Barriel, V.4    Pinçon, C.5    Aliouat-Denis, C.M.6    Pottier, M.7    Noël, C.8    Viscogliosi, E.9    Aliouat, E.M.10
  • 44
    • 84899684731 scopus 로고    scopus 로고
    • Population structure among mycobacterium tuberculosis isolates from pulmonary tuberculosis patients in Colombia
    • [CrossRef] [PubMed]
    • Realpe, T.; Correa, N.; Rozo, J.C.; Ferro, B.E.; Gomez, V.; Zapata, E.; Ribon, W.; Puerto, G.; Castro, C.; Nieto, L.M.; et al. Population structure among mycobacterium tuberculosis isolates from pulmonary tuberculosis patients in Colombia. PLoS ONE 2014, 9, e93848. [CrossRef] [PubMed]
    • (2014) PLoS ONE , vol.9
    • Realpe, T.1    Correa, N.2    Rozo, J.C.3    Ferro, B.E.4    Gomez, V.5    Zapata, E.6    Ribon, W.7    Puerto, G.8    Castro, C.9    Nieto, L.M.10
  • 45
    • 0034219272 scopus 로고    scopus 로고
    • Plate tectonics, seaways and climate in the historical biogeography of mammals
    • [CrossRef] [PubMed]
    • Cox, C.B. Plate tectonics, seaways and climate in the historical biogeography of mammals. Mem. Inst. Oswaldo Cruz 2000, 95, 509-516. [CrossRef] [PubMed]
    • (2000) Mem. Inst. Oswaldo Cruz , vol.95 , pp. 509-516
    • Cox, C.B.1


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