메뉴 건너뛰기




Volumn 84, Issue 21, 2010, Pages 11336-11349

Genomic characterization of severe acute respiratory syndrome-related coronavirus in European bats and classification of coronaviruses based on partial RNA-dependent RNA polymerase gene sequences

(18)  Drexler, Jan Felix a   Gloza Rausch, Florian a,b   Glende, Jörg c   Corman, Victor Max a   Muth, Doreen a   Goettsche, Matthias d   Seebens, Antje a,b   Niedrig, Matthias e   Pfefferle, Susanne a   Yordanov, Stoian f   Zhelyazkov, Lyubomir f   Hermanns, Uwe g   Vallo, Peter h   Lukashev, Alexander i   Müller, Marcel Alexander a   Deng, Hongkui j   Herrler, Georg c   Drosten, Christian a  


Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; RNA DIRECTED RNA POLYMERASE;

EID: 77957950482     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.00650-10     Document Type: Article
Times cited : (299)

References (64)
  • 4
    • 0030634897 scopus 로고    scopus 로고
    • Nidovirales: A new order comprising Coronaviridae and Arteriviridae
    • Cavanagh, D. 1997. Nidovirales: a new order comprising Coronaviridae and Arteriviridae. Arch. Virol. 142:629-633.
    • (1997) Arch. Virol. , vol.142 , pp. 629-633
    • Cavanagh, D.1
  • 5
    • 12144286761 scopus 로고    scopus 로고
    • Molecular evolution of the SARS coronavirus during the course of the SARS epidemic in China
    • Chinese Sars Molecular Epidemiology Consortium
    • Chinese Sars Molecular Epidemiology Consortium. 2004. Molecular evolution of the SARS coronavirus during the course of the SARS epidemic in China. Science 303:1666-1669.
    • (2004) Science , vol.303 , pp. 1666-1669
  • 6
    • 44649147346 scopus 로고    scopus 로고
    • Genomic characterizations of bat coronaviruses (1A, 1B and HKU8) and evidence for co-infections in Miniopterus bats
    • Chu, D. K., J. S. Peiris, H. Chen, Y. Guan, and L. L. Poon. 2008. Genomic characterizations of bat coronaviruses (1A, 1B and HKU8) and evidence for co-infections in Miniopterus bats. J. Gen. Virol. 89:1282-1287.
    • (2008) J. Gen. Virol. , vol.89 , pp. 1282-1287
    • Chu, D.K.1    Peiris, J.S.2    Chen, H.3    Guan, Y.4    Poon, L.L.5
  • 11
    • 36148979683 scopus 로고    scopus 로고
    • Regulation of IRF-3-dependent innate immunity by the papain-like protease domain of the severe acute respiratory syndrome coronavirus
    • Devaraj, S. G., N. Wang, Z. Chen, Z. Chen, M. Tseng, N. Barretto, R. Lin, C. J. Peters, C. T. Tseng, S. C. Baker, and K. Li. 2007. Regulation of IRF-3-dependent innate immunity by the papain-like protease domain of the severe acute respiratory syndrome coronavirus. J. Biol. Chem. 282:32208-32221.
    • (2007) J. Biol. Chem. , vol.282 , pp. 32208-32221
    • Devaraj, S.G.1    Wang, N.2    Chen, Z.3    Chen, Z.4    Tseng, M.5    Barretto, N.6    Lin, R.7    Peters, C.J.8    Tseng, C.T.9    Baker, S.C.10    Li, K.11
  • 13
    • 27344452027 scopus 로고    scopus 로고
    • Virology. What links bats to emerging infectious diseases?
    • Dobson, A. P. 2005. Virology. What links bats to emerging infectious diseases? Science 310:628-629.
    • (2005) Science , vol.310 , pp. 628-629
    • Dobson, A.P.1
  • 16
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond, A. J., and A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 19
    • 40849094053 scopus 로고    scopus 로고
    • The effect of sample type, temperature and RNAlater on the stability of avian influenza virus RNA
    • Forster, J. L., V. B. Harkin, D. A. Graham, and S. J. McCullough. 2008. The effect of sample type, temperature and RNAlater on the stability of avian influenza virus RNA. J. Virol. Methods 149:190-194.
    • (2008) J. Virol. Methods , vol.149 , pp. 190-194
    • Forster, J.L.1    Harkin, V.B.2    Graham, D.A.3    McCullough, S.J.4
  • 20
    • 0030331026 scopus 로고    scopus 로고
    • Markov chain Monte Carlo methods in biostatistics
    • Gelman, A., and D. B. Rubin. 1996. Markov chain Monte Carlo methods in biostatistics. Stat. Methods Med. Res. 5:339-355.
    • (1996) Stat. Methods Med. Res. , vol.5 , pp. 339-355
    • Gelman, A.1    Rubin, D.B.2
  • 22
    • 0344304518 scopus 로고    scopus 로고
    • A comparative sequence analysis to revise the current taxonomy of the family Coronaviridae
    • Gonzalez, J. M., P. Gomez-Puertas, D. Cavanagh, A. E. Gorbalenya, and L. Enjuanes. 2003. A comparative sequence analysis to revise the current taxonomy of the family Coronaviridae. Arch. Virol. 148:2207-2235.
    • (2003) Arch. Virol. , vol.148 , pp. 2207-2235
    • Gonzalez, J.M.1    Gomez-Puertas, P.2    Cavanagh, D.3    Gorbalenya, A.E.4    Enjuanes, L.5
  • 23
    • 77949405054 scopus 로고    scopus 로고
    • Recombination, reservoirs, and the modular spike: Mechanisms of coronavirus cross-species transmission
    • Graham, R. L., and R. S. Baric. 2010. Recombination, reservoirs, and the modular spike: mechanisms of coronavirus cross-species transmission. J. Virol. 84:3134-3146.
    • (2010) J. Virol. , vol.84 , pp. 3134-3146
    • Graham, R.L.1    Baric, R.S.2
  • 25
    • 0033871684 scopus 로고    scopus 로고
    • Isolation of Hendra virus from pteropid bats: A natural reservoir of Hendra virus
    • Halpin, K., P. L. Young, H. E. Field, and J. S. Mackenzie. 2000. Isolation of Hendra virus from pteropid bats: a natural reservoir of Hendra virus. J. Gen. Virol. 81:1927-1932.
    • (2000) J. Gen. Virol. , vol.81 , pp. 1927-1932
    • Halpin, K.1    Young, P.L.2    Field, H.E.3    Mackenzie, J.S.4
  • 27
    • 33846104528 scopus 로고    scopus 로고
    • Severe acute respiratory syndrome coronavirus open reading frame (ORF) 3b, ORF 6, and nucleocapsid proteins function as interferon antagonists
    • Kopecky-Bromberg, S. A., L. Martinez-Sobrido, M. Frieman, R. A. Baric, and P. Palese. 2007. Severe acute respiratory syndrome coronavirus open reading frame (ORF) 3b, ORF 6, and nucleocapsid proteins function as interferon antagonists. J. Virol. 81:548-557.
    • (2007) J. Virol. , vol.81 , pp. 548-557
    • Kopecky-Bromberg, S.A.1    Martinez-Sobrido, L.2    Frieman, M.3    Baric, R.A.4    Palese, P.5
  • 28
    • 0018860307 scopus 로고
    • Isolation of rhinoviruses and coronaviruses from 38 colds in adults
    • Larson, H. E., S. E. Reed, and D. A. Tyrrell. 1980. Isolation of rhinoviruses and coronaviruses from 38 colds in adults. J. Med. Virol. 5:221-229.
    • (1980) J. Med. Virol. , vol.5 , pp. 221-229
    • Larson, H.E.1    Reed, S.E.2    Tyrrell, D.A.3
  • 31
    • 24944498409 scopus 로고    scopus 로고
    • Structure of SARS coronavirus spike receptor-binding domain complexed with receptor
    • Li, F., W. Li, M. Farzan, and S. C. Harrison. 2005. Structure of SARS coronavirus spike receptor-binding domain complexed with receptor. Science 309:1864-1868.
    • (2005) Science , vol.309 , pp. 1864-1868
    • Li, F.1    Li, W.2    Farzan, M.3    Harrison, S.C.4
  • 33
    • 33646192966 scopus 로고    scopus 로고
    • Animal origins of the severe acute respiratory syndrome coronavirus: Insight from ACE2-S-protein interactions
    • Li, W., S. K. Wong, F. Li, J. H. Kuhn, I. C. Huang, H. Choe, and M. Farzan. 2006. Animal origins of the severe acute respiratory syndrome coronavirus: insight from ACE2-S-protein interactions. J. Virol. 80:4211-4219.
    • (2006) J. Virol. , vol.80 , pp. 4211-4219
    • Li, W.1    Wong, S.K.2    Li, F.3    Kuhn, J.H.4    Huang, I.C.5    Choe, H.6    Farzan, M.7
  • 35
    • 33746317830 scopus 로고    scopus 로고
    • The molecular biology of coronaviruses
    • Masters, P. S. 2006. The molecular biology of coronaviruses. Adv. Virus Res. 66:193-292.
    • (2006) Adv. Virus Res. , vol.66 , pp. 193-292
    • Masters, P.S.1
  • 36
    • 0036343350 scopus 로고    scopus 로고
    • Rapid activation of poly(ADP-ribose) polymerase contributes to Sindbis virus and staurosporine-induced apoptotic cell death
    • Nargi-Aizenman, J. L., C. M. Simbulan-Rosenthal, T. A. Kelly, M. E. Smulson, and D. E. Griffin. 2002. Rapid activation of poly(ADP-ribose) polymerase contributes to Sindbis virus and staurosporine-induced apoptotic cell death. Virology 293:164-171.
    • (2002) Virology , vol.293 , pp. 164-171
    • Nargi-Aizenman, J.L.1    Simbulan-Rosenthal, C.M.2    Kelly, T.A.3    Smulson, M.E.4    Griffin, D.E.5
  • 38
    • 37049025398 scopus 로고    scopus 로고
    • The 29-nucleotide deletion present in human but not in animal severe acute respiratory syndrome coronaviruses disrupts the functional expression of open reading frame 8
    • Oostra, M., C. A. de Haan, and P. J. Rottier. 2007. The 29-nucleotide deletion present in human but not in animal severe acute respiratory syndrome coronaviruses disrupts the functional expression of open reading frame 8. J. Virol. 81:13876-13888.
    • (2007) J. Virol. , vol.81 , pp. 13876-13888
    • Oostra, M.1    De Haan, C.A.2    Rottier, P.J.3
  • 40
    • 70349121706 scopus 로고    scopus 로고
    • Reverse genetic characterization of the natural genomic deletion in SARS-coronavirus strain Frankfurt-1 open reading frame 7b reveals an attenuating function of the 7b protein in-vitro and in-vivo
    • Pfefferle, S., V. Krahling, V. Ditt, K. Grywna, E. Muhlberger, and C. Drosten. 2009. Reverse genetic characterization of the natural genomic deletion in SARS-coronavirus strain Frankfurt-1 open reading frame 7b reveals an attenuating function of the 7b protein in-vitro and in-vivo. Virol. J. 6:131.
    • (2009) Virol. J. , vol.6 , pp. 131
    • Pfefferle, S.1    Krahling, V.2    Ditt, V.3    Grywna, K.4    Muhlberger, E.5    Drosten, C.6
  • 45
    • 38849162885 scopus 로고    scopus 로고
    • Difference in receptor usage between Severe Acute Respiratory Syndrome (SARS) coronavirus and SARS-like coronavirus of bat origin
    • DOI 10.1128/JVI.01085-07
    • Ren, W., X. Qu, W. Li, Z. Han, M. Yu, P. Zhou, S. Y. Zhang, L. F. Wang, H. Deng, and Z. Shi. 2008. Difference in receptor usage between severe acute respiratory syndrome (SARS) coronavirus and SARS-like coronavirus of bat origin. J. Virol. 82:1899-1907. (Pubitemid 351206936)
    • (2008) Journal of Virology , vol.82 , Issue.4 , pp. 1899-1907
    • Ren, W.1    Qu, X.2    Li, W.3    Han, Z.4    Yu, M.5    Zhou, P.6    Zhang, S.-Y.7    Wang, L.-F.8    Deng, H.9    Shi, Z.10
  • 46
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist, F., and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 47
    • 84934443976 scopus 로고    scopus 로고
    • Intracellular transport of the S proteins of coronaviruses
    • Schwegmann-Wessels, C., X. Ren, and G. Herrler. 2006. Intracellular transport of the S proteins of coronaviruses. Adv. Exp. Med. Biol. 581:271-275.
    • (2006) Adv. Exp. Med. Biol. , vol.581 , pp. 271-275
    • Schwegmann-Wessels, C.1    Ren, X.2    Herrler, G.3
  • 48
    • 50149120731 scopus 로고    scopus 로고
    • Pathways of cross-species transmission of synthetically reconstructed zoonotic severe acute respiratory syndrome coronavirus
    • Sheahan, T., B. Rockx, E. Donaldson, D. Corti, and R. Baric. 2008. Pathways of cross-species transmission of synthetically reconstructed zoonotic severe acute respiratory syndrome coronavirus. J. Virol. 82:8721-8732.
    • (2008) J. Virol. , vol.82 , pp. 8721-8732
    • Sheahan, T.1    Rockx, B.2    Donaldson, E.3    Corti, D.4    Baric, R.5
  • 49
    • 39749177748 scopus 로고    scopus 로고
    • Mechanisms of zoonotic severe acute respiratory syndrome coronavirus host range expansion in human airway epithelium
    • Sheahan, T., B. Rockx, E. Donaldson, A. Sims, R. Pickles, D. Corti, and R. Baric. 2008. Mechanisms of zoonotic severe acute respiratory syndrome coronavirus host range expansion in human airway epithelium. J. Virol. 82:2274-2285.
    • (2008) J. Virol. , vol.82 , pp. 2274-2285
    • Sheahan, T.1    Rockx, B.2    Donaldson, E.3    Sims, A.4    Pickles, R.5    Corti, D.6    Baric, R.7
  • 53
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 55
    • 22144469390 scopus 로고    scopus 로고
    • Viral infectivity is maintained by an RNA protection buffer
    • Uhlenhaut, C., and M. Kracht. 2005. Viral infectivity is maintained by an RNA protection buffer. J. Virol. Methods 128:189-191.
    • (2005) J. Virol. Methods , vol.128 , pp. 189-191
    • Uhlenhaut, C.1    Kracht, M.2
  • 56
    • 41549123654 scopus 로고    scopus 로고
    • Human (non-severe acute respiratory syndrome) coronavirus infections in hospitalised children in France
    • DOI 10.1111/j.1440-1754.2007.01246.x
    • Vabret, A., J. Dina, S. Gouarin, J. Petitjean, V. Tripey, J. Brouard, and F. Freymuth. 2008. Human (non-severe acute respiratory syndrome) coronavirus infections in hospitalised children in France. J. Paediatr. Child Health 44:176-181. (Pubitemid 351463943)
    • (2008) Journal of Paediatrics and Child Health , vol.44 , Issue.4 , pp. 176-181
    • Vabret, A.1    Dina, J.2    Gouarin, S.3    Petitjean, J.4    Tripey, V.5    Brouard, J.6    Freymuth, F.7
  • 57
    • 0037445549 scopus 로고    scopus 로고
    • An outbreak of coronavirus OC43 respiratory infection in Normandy, France
    • Vabret, A., T. Mourez, S. Gouarin, J. Petitjean, and F. Freymuth. 2003. An outbreak of coronavirus OC43 respiratory infection in Normandy, France. Clin. Infect. Dis. 36:985-989.
    • (2003) Clin. Infect. Dis. , vol.36 , pp. 985-989
    • Vabret, A.1    Mourez, T.2    Gouarin, S.3    Petitjean, J.4    Freymuth, F.5
  • 58
    • 62349107655 scopus 로고    scopus 로고
    • Variation of mitochondrial DNA reveals high cryptic diversity in Hipposideros caffer complex
    • Vallo, P., A. GuillénServent, P. Benda, D. B. Pires, and P. Koubek. 2008. Variation of mitochondrial DNA reveals high cryptic diversity in Hipposideros caffer complex. Acta Chiropt. 10:193-206.
    • (2008) Acta Chiropt. , vol.10 , pp. 193-206
    • Vallo, P.1    GuillénServent, A.2    Benda, P.3    Pires, D.B.4    Koubek, P.5
  • 62
    • 58149502555 scopus 로고    scopus 로고
    • Crystal structures of two coronavirus ADP-ribose-1′- monophosphatases and their complexes with ADP-ribose: A systematic structural analysis of the viral ADRP domain
    • Xu, Y., L. Cong, C. Chen, L. Wei, Q. Zhao, X. Xu, Y. Ma, M. Bartlam, and Z. Rao. 2009. Crystal structures of two coronavirus ADP-ribose-1′- monophosphatases and their complexes with ADP-ribose: a systematic structural analysis of the viral ADRP domain. J. Virol. 83:1083-1092.
    • (2009) J. Virol. , vol.83 , pp. 1083-1092
    • Xu, Y.1    Cong, L.2    Chen, C.3    Wei, L.4    Zhao, Q.5    Xu, X.6    Ma, Y.7    Bartlam, M.8    Rao, Z.9
  • 64
    • 77949344988 scopus 로고    scopus 로고
    • The N terminal region of severe acute respiratory syndrome coronavirus protein 6 induces membrane rearrangement and enhances virus replication
    • Zhou, H., D. Ferraro, J. Zhao, S. Hussain, J. Shao, J. Trujillo, J. Netland, T. Gallagher, and S. Perlman. 2010. The N terminal region of severe acute respiratory syndrome coronavirus protein 6 induces membrane rearrangement and enhances virus replication. J. Virol. 84:3542-3551.
    • (2010) J. Virol. , vol.84 , pp. 3542-3551
    • Zhou, H.1    Ferraro, D.2    Zhao, J.3    Hussain, S.4    Shao, J.5    Trujillo, J.6    Netland, J.7    Gallagher, T.8    Perlman, S.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.