Theories about evolutionary origins of human hepatitis B virus in primates and humans

Brazilian Journal of Infectious Diseases

Volumn 18, Issue 5, 2014, Pages 535-543

  de Carvalho Dominguez Souza, Breno Frederico ^a   Drexler, Jan Felix ^b   de Lima, Renato Santos ^a   de Oliveira Hughes Veiga do Rosário, Mila ^a   Netto, Eduardo Martins ^a  

^a FEDERAL UNIVERSITY OF BAHIA   (Brazil)

^b UNIVERSITY OF BONN   (Germany)

Author keywords

Evolutionary origins; Hepadnaviridae; Hepatitis B virus; Non human primates

Indexed keywords

CERCOPITHECIDAE; GENETIC VARIABILITY; GENOTYPE; HEPADNAVIRIDAE; HEPATITIS B VIRUS; HUMAN; INFECTION RISK; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLATYRRHINI; PRIMATE; REVIEW; SOUTH AMERICA; SPECIES DIFFERENTIATION; VIRUS GENOME; VIRUS ISOLATION; VIRUS MORPHOLOGY; VIRUS REPLICATION; VIRUS TRANSMISSION; WOOLLY MONKEY; ANIMAL; GENETICS; PHYLOGEOGRAPHY; VIROLOGY;

ANIMALS; EVOLUTION, MOLECULAR; GENOTYPE; HEPATITIS B VIRUS; HUMANS; PHYLOGENY; PHYLOGEOGRAPHY; PRIMATES;

EID: 84912527525     PISSN: 14138670     EISSN: 16784391     Source Type: Journal    
DOI: 10.1016/j.bjid.2013.12.006     Document Type: Short Survey

References (78)

1. Kane M. Global programme for control of hepatitis B infection. Vaccine 1995, 13:47-49.
2. WHO Hepatitis B 2013, Available from: http://www.who.int/mediacentre/factsheets/fs204/en/ (accessed 10.06.13).
3. Maddrey W.C. Hepatitis B - an important public health issue. Clin Lab 2001, 47:51-55.
4. Lavanchy D. Hepatitis B virus epidemiology, disease burden, treatment, and current and emerging prevention and control measures. J Viral Hepat 2004, 11:97-107.
5. Shepard C.W., Simard E.P., Finelli L., et al. Hepatitis B virus infection: epidemiology and vaccination. Epidemiol Rev 2006, 28:112-125.
6. Carman W.F., Zanetti A.R., Karayiannis P., et al. Vaccine-induced escape mutant of hepatitis B virus. Lancet 1990, 336:325-329.
7. Shizuma T., et al. Molecular analysis of antigenicity and immunogenicity of a vaccine-induced escape mutant of hepatitis B virus. J Gastroenterol 2003, 38:244-253.
8. Tacke F., Amini-Bavil-Olyaee S., Heim A., Luedde T., Manns M.P., Trautwein C. Acute hepatitis B virus infection by genotype F despite successful vaccination in an immune-competent German patient. J Clin Virol 2007, 38:353-357.
9. Tatematsu K., Tanaka Y., Kurbanov F., et al. A genetic variant of hepatitis B virus divergent from known human and ape genotypes isolated from a Japanese patient and provisionally assigned to new genotype J. J Virol 2009, 83:10538-10547.
10. Simmonds P., Midgley S. Recombination in the genesis and evolution of hepatitis B virus genotypes. J Virol 2005, 79:15467-15476.
11. Tran T.T., Trinh T.N., Abe K. New complex recombinant genotype of hepatitis B virus identified in Vietnam. J Virol 2008, 82:5657-5663.
12. Seerger C., et al. The cloned genome of ground squirrel hepatitis virus is infectious in the animal. Proc Natl Acad Sci USA 1984, 81:5849-5952.
13. Pringle C.R. The universal system of virus taxonomy of the International Committee on Virus Taxonomy (ICTV), including new proposals ratified since publication of the Sixth ICTV Report in 1995. Arch Virol 1998, 143:203-210.
14. Mandart E., Kay A., Galibert F. Nucleotide sequence of a cloned duck hepatitis B virus genome: comparison with woodchuck and human hepatitis B virus sequences. J Virol 1984, 49:782-792.
15. Seeger C., Mason W.S. Hepatitis B virus biology. Microbiol Mol Biol Rev 2000, 64:51-68.
16. Fauquet C.M., Mayo M.A., Maniloff J., et al. Hepadnaviridae. Virus taxonomy classification and nomenclature of viruses. Eight report of the international committee on taxonomy of viruses 2005, 373-384. Elselvier, Academic Press, Amsterdam. C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, L.A. Ball (Eds.).
17. Madigan M.T.M., Martinko J.M., Parker J. Brock Biología de los Microorganismos 2003, 675-710. Pearson, Prentice Hall.
18. Zhu R., Zhang H.P., Yu H., et al. Hepatitis B virus mutations associated with in situ expression of hepatitis B core antigen, viral load and prognosis in chronic hepatitis B patients. Pathol Res Pract 2008, 204:731-742.
19. Wen Y., Golubkov V.S., Strongin A.Y., Jiang W., Reed J.C. Interaction of hepatitis B viral oncoprotein with cellular target HBXIP dysregulates centrosome dynamics and mitotic spindle formation. J Biol Chem 2008, 283:2793-2803.
20. Oliveira C.M.A. Situação imunológica dos profissionais de saúde de um laboratório de pesquisa em relação ao vírus da hepatite B 2009, Universidade Federal do Pará, 98f: Il.
21. Levrero M., Pollicino T., Petersen J., et al. Control of cccDNA function in hepatitis B virus infection. J Hepatol 2009, 51:581-592.
22. Lyons S., Sharp C., LeBreton M., et al. Species association of hepatitis B virus (HBV) in non-human apes; evidence for recombination between gorilla and chimpanzee variants. PLoS ONE 2012, 7:e33430.
23. Starkman S.E., MacDonald D.M., Lewis J.C., Holmes E.C., Simmonds P. Geographic and species association of hepatitis B virus genotypes in non-human primates. Virology 2003, 314:381-393.
24. Simmonds P. The origin and evolution of hepatitis viruses in humans. J Gen Virol 2001, 82(Pt 4):693-712.
25. Lanford R.E., Chavez D., Rico-Hesse R., et al. Hepadnavirus infection in captive gibbons. J Virol 2000, 74:2955-2959.
26. Hu X.L., Margolis H.S., Purcell R.H., et al. Identification of hepatitis B virus indigenous to chimpanzees. Proc Natl Acad Sci USA 2000, 97:1661-1664.
27. Hu X.L., Javadian A., Gagneux P., et al. Paired chimpanzee hepatitis B virus (ChHBV) and mtDNA sequences suggest different ChHBV genetic variants are found in geographically distinct chimpanzee subspecies. Virus Res 2001, 79:103-108.
28. MacDonald D.M., Holmes E.C., Lewis J.C., et al. Detection of hepatitis B virus infection in wild-born chimpanzees (Pan troglodytes verus): phylogenetic relationships with human and other primate genotypes. J Virol 2000, 74:4253-4257.
29. Takahashi K., Mishiro S., Prince A.M. Novel hepatitis B virus strain from a chimpanzee of Central Africa (Pan troglodytes troglodytes) with an unusual antigenicity of the core protein. Intervirology 2001, 44:321-326.
30. Grethe S., Heckel J.O., Rietschel W., et al. Molecular epidemiology of hepatitis B virus variants in nonhuman primates. J Virol 2000, 74:5377-5381.
31. Warren K.S., Heeney J.L., Swan R.A., et al. A new group of hepadnaviruses naturally infecting oran-gutans (Pongo pygmaeus). J Virol 1999, 73:7860-7865.
32. Lanford R.E., Chavez D., Brasky K.M., et al. Isolation of a hepadnavirus from the woolly monkey, a New World primate. Proc Natl Acad Sci USA 1998, 95:5757-5761.
33. Fares M.A., Holmes E.C. A revised evolutionary history of hepatitis B virus (HBV). J Mol Evol 2002, 54:807-814.
34. Bollyky P.L., Rambaut A., Grassley N., et al. Hepatitis B virus has a recent new world evolutionary origin. J Hepatol 1998, 28:96.
35. Dupinay T., Gheit T., Roques P., et al. Discovery of naturally occurring transmissible chronic hepatitis B virus infection among Macaca fascicular is from mauritius island. Hepatology 2013, 10.1002/hep.26428.
36. Patel M.R., Emerman M., Malik H.S. Paleovirology - ghosts and gifts of viruses past. Curr Opin Virol 2011, 1:304-309.
37. Katzourakis A., Gifford R.J. Endogenous viral elements in animal genomes. PLoS Genet 2010, 6:e1001191.
38. Gilbert C., Feschotte C. Genomic fossils calibrate the long-term evolution of hepadnaviruses. PLoS Biol 2010, 8.
39. Cui J., Holmes E.C. Endogenous hepadnaviruses in the genome of the budgerigar (Melopsittacus undulatus) and the evolution of avian hepadnaviruses. J Virol 2012, 86:7688-7691.
40. Suh A.W., Brosius J., Schmitz J., et al. The genome of a Mesozoic paleovirus reveals the evolution of hepatitis B viruses. Nat Commun 2013, 10.1038/ncomms2798.
41. Mason W.S., Seal G., Summers J. Virus of Pekin ducks with structural and biological relatedness to human hepatitis B virus. J Virol 1980, 36:829-836.
42. Summers J., Smolec J.M., Snyder R. A virus similar to human hepatitis B virus associated with hepatitis and hepatoma in woodchucks. Proc Natl Acad Sci USA 1978, 75:4533-4537.
43. Marion P.L., Oshiro L.S., Regnery D.C., et al. A virus in Beechey ground squirrels that is related to hepatitis B virus of humans. Proc Natl Acad Sci USA 1980, 77:2941-2945.
44. Testut P., Renard C.A., Terradillos O., et al. A new hepadnavirus endemic in arctic ground squirrels in Alaska. J Virol 1996, 70:4210-4219.
45. Sprengel R., Kaleta E.F., Will H. Isolation and characterization of a hepatitis B virus endemic in herons. J Virol 1988, 62:3832-3839.
46. Pult I., Netter H.J., Bruns M., et al. Identification and analysis of a new hepadnavirus in white storks. Virology 2001, 289:114-128.
47. Wolfe N.D., Escalante A.A., Karesh W.B., et al. Wild primate populations in emerging infectious disease research: the missing link?. Emerg Infect Dis 1998, 4:149-158.
48. Glebe D., Urban S. Viral and cellular determinants involved in hepadnaviral entry. World J Gastroenterol 2007, 13:22-38.
49. Liang T.J. Hepatitis B: the virus and disease. Hepatology 2009, 49(5 Suppl.):S13-S21.
50. Magnius L.O., Norder H. Subtypes, genotypes and molecular epidemiology of the hepatitis B virus as reflected by sequence variability of the S-gene. Intervirology 1995, 38:24-34.
51. Takahashi K., Brotman B., Usuda S., et al. Full-genome sequence analyses of hepatitis B virus (HBV) strains recovered from chimpanzees infected in the wild: implications for an origin of HBV. Virology 2000, 267:58-64.
52. Springer M.S., Meredith R.W., Gatesy J., et al. Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix. PLoS ONE 2012, 7:e49521.
53. Liu W., Pan S., Yang H., et al. The first full-length endogenous hepadnaviruses: identification and analysis. J Virol 2012, 86:9510-9513.
54. Poux C., Chevret P., Huchon D., et al. Arrival and diversification of caviomorph rodents and platyrrhine primates in South America. Syst Biol 2006, 55:228-244.
55. Sugauchi F., Orito E., Ichida T., et al. Hepatitis B virus of genotype B with or without recombination with genotype C over the precore region plus the core gene. J Virol 2002, 76:5985-5992.
56. Chiarello A.G., Aguiar L.M.S., Cerqueira R., et al. Mamíferos ameaçados de extinção no Brasil. Livro vermelho da fauna brasileira ameaçada de extinção 2008, 681-842. Ministério do Meio Ambiente, Brasília, Brasil. 1st ed.
57. Rylands A.B., Mittermeier R.A. The diversity of the new world primates (platyrrhini): an annotated taxonomy. Vet Parasitol 2010, 169:193-197.
58. Daszak P., Cunningham A.A., Hyatt A.D. Emerging infectious diseases of wildlife threats to biodiversity and human health. Science 2000, 287:442-449.
59. Njouom R., Mba S.A.S., Nerrienet E., et al. Detection and characterization of hepatitis B virus strains from wild-caught gorillas and chimpanzees in Cameroon, Central Africa. Infet Genet Evol 2010, 10:790-796.
60. Makuwa M., Souquière S., Bourry O., et al. Complete-genome analysis of hepatitis B virus from wild-born chimpanzees in central Africa demonstrates a strain-specific geographical cluster. J Gen Virol 2007, 88:2679-2685.
61. Makuwa M., Souquiere S., Telfer P., et al. Hepatitis viruses in non-human primates. J Med Primatol 2006, 35:384-387.
62. Ogata N., Ostberg L., Ehrlich P.H., et al. Markedly prolonged incubation period of hepatitis B in a chimpanzee passively immunized with a human monoclonal antibody to the a determinant of hepatitis B surface antigen. Proc Natl Acad Sci USA 1993, 90:3014-3018.
63. Vaudin M., Wolstenholme A.J., Tsiquaye K.N., et al. The complete nucleotide sequence of the genome of a hepatitis B virus isolated from a naturally infected chimpanzee. J Gen Virol 1988, 69:1383-1389.
64. Eichberg J.W., Kalter S.S. Hepatitis A and B: serologic survey of human and nonhuman primate sera. Lab Anim Sci 1980, 30:541-543.
65. Zuckerman A.J., Thornton A., Howard C.R., et al. Hepatitis B outbreak among chimpanzees at the London Zoo. Lancet 1978, 2:652-654.
66. Davis H.L., Suparto I.I., Weeratna R.R., et al. CpG DNA overcomes hyporesponsiveness to hepatitis B vaccine in orangutans. Vaccine 2000, 18:1920-1924.
67. Sall A.A., Starkman S., Reynes J.M., et al. Frequent infection of Hylobates pileatus (pileated gibbon) with species-associated variants of hepatitis B virus in Cambodia. J Gen Virol 2005, 86:333-337.
68. Aiba N., Nishimura H., Arakawa Y., et al. Complete nucleotide sequence and phylogenetic analyses of hepatitis B virus isolated from two pileated gibbons. Virus Genes 2003, 27:219-226.
69. Noppornpanth S., Haagmans B.L., Bhattarakosol P., et al. Molecular epidemiology of gibbon hepatitis B virus transmission. J Gen Virol 2003, 84:147-155.
70. Thornton S.M., Walker S., Zuckerman J.N. Management of hepatitis B virus infections in two gibbons and a western lowland gorilla in a zoological collection. Vet Rec 2001, 149:113-115.
71. Norder H., Ebert J.W., Fields H.A., et al. Complete sequencing of a gibbon hepatitis B virus genome reveals a unique genotype distantly related to the chimpanzee hepatitis B virus. Virology 1996, 218:214-223.
72. Baptista M., Kramvis A., Jammeh S., et al. Follow up of infection of chacma baboons with inoculum containing A and non-A genotypes of hepatitis B virus. World J Gastroenterol 2003, 9:731-735.
73. Michaels M.G., Lanford R., Demetris A.J., et al. Lack of susceptibility of baboons to infection with hepatitis B virus. Transplantation 1996, 61:350-351.
74. Saitou N., Nei M. The Neighbor-Joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406-425.
75. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evaluation 1985, 39:783-791.
76. Nei M., Kumar S. Molecular evolution and phylogenetics 2000, Oxford University Press, New York.
77. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28:2731-2739.
78. Dickens C., Kew M.C., Purcell R.H., Kramvis A. Occult hepatitis B virus infection in Chacma baboons, South Africa. Emerg Infect Dis 2013, 19(4):598-605.