-
1
-
-
0031939281
-
Mechanisms of latency in Mycobacterium tuberculosis
-
Parrish NM, Dick JD, Bishai WR, Mechanisms of latency in Mycobacterium tuberculosis. Trends Microbiol. 1998;6:107–12. 9582936
-
(1998)
Trends Microbiol
, vol.6
, pp. 107-112
-
-
Parrish, N.M.1
Dick, J.D.2
Bishai, W.R.3
-
2
-
-
79251633508
-
Fine-tuning the space, time, and host distribution of mycobacteria in wildlife
-
Gortazar C, Torres MJ, Acevedo P, Aznar J, Negro JJ, De La Fuente J, et al. Fine-tuning the space, time, and host distribution of mycobacteria in wildlife. BMC Microbiol. 2011;11:27. doi: 10.1186/1471-2180-11-27 21288321
-
(2011)
BMC Microbiol
, vol.11
, pp. 27
-
-
Gortazar, C.1
Torres, M.J.2
Acevedo, P.3
Aznar, J.4
Negro, J.J.5
De La Fuente, J.6
-
3
-
-
84856807938
-
The status of tuberculosis in European wild mammals
-
Gortazar C, Delahay RJ, McDonald RA, Boadella M, Wilson GJ, Gavier-Widen D, et al. The status of tuberculosis in European wild mammals. Mamm Rev. 2012;42:193–206.
-
(2012)
Mamm Rev
, vol.42
, pp. 193-206
-
-
Gortazar, C.1
Delahay, R.J.2
McDonald, R.A.3
Boadella, M.4
Wilson, G.J.5
Gavier-Widen, D.6
-
4
-
-
31844453937
-
Advances in understanding disease epidemiology and implications for control and eradication of tuberculosis in livestock: The experience from New Zealand
-
Ryan TJ, Livingstone PG, Ramsey DSL, De Lisle GW, Nugent G, Collins DM, et al. Advances in understanding disease epidemiology and implications for control and eradication of tuberculosis in livestock: The experience from New Zealand. Vet Microbiol. 2006;112:211–9. 16330161
-
(2006)
Vet Microbiol
, vol.112
, pp. 211-219
-
-
Ryan, T.J.1
Livingstone, P.G.2
Ramsey, D.S.L.3
De Lisle, G.W.4
Nugent, G.5
Collins, D.M.6
-
5
-
-
37249075488
-
Evidence of the role of European wild boar as a reservoir of Mycobacterium tuberculosis complex
-
Naranjo V, Gortazar C, Vicente J, de la Fuente J, Evidence of the role of European wild boar as a reservoir of Mycobacterium tuberculosis complex. Vet Microbiol. 2008;127:1–9. 18023299
-
(2008)
Vet Microbiol
, vol.127
, pp. 1-9
-
-
Naranjo, V.1
Gortazar, C.2
Vicente, J.3
de la Fuente, J.4
-
6
-
-
70350566632
-
First data on Eurasian wild boar response to oral immunization with BCG and challenge with a Mycobacterium bovis field strain
-
Ballesteros C, Garrido JM, Vicente J, Romero B, Galindo RC, Minguijón E, et al. First data on Eurasian wild boar response to oral immunization with BCG and challenge with a Mycobacterium bovis field strain. Vaccine. 2009;27:6662–8. doi: 10.1016/j.vaccine.2009.08.095 19747578
-
(2009)
Vaccine
, vol.27
, pp. 6662-6668
-
-
Ballesteros, C.1
Garrido, J.M.2
Vicente, J.3
Romero, B.4
Galindo, R.C.5
Minguijón, E.6
-
7
-
-
80052829867
-
Protection against tuberculosis in Eurasian wild boar vaccinated with heat-inactivated Mycobacterium bovis
-
Garrido JM, Sevilla IA, Beltrán-Beck B, Minguijón E, Ballesteros C, Galindo RC, et al. Protection against tuberculosis in Eurasian wild boar vaccinated with heat-inactivated Mycobacterium bovis. PLoS ONE. 2011;6(9):e24905. doi: 10.1371/journal.pone.0024905 21935486
-
(2011)
PLoS ONE
, vol.6
, Issue.9
, pp. e24905
-
-
Garrido, J.M.1
Sevilla, I.A.2
Beltrán-Beck, B.3
Minguijón, E.4
Ballesteros, C.5
Galindo, R.C.6
-
8
-
-
84901306888
-
Oral vaccination with heat inactivated Mycobacterium bovis activates the complement system to protect against tuberculosis
-
Beltrán-Beck B, De La Fuente J, Garrido JM, Aranaz A, Sevilla I, Villar M, et al. Oral vaccination with heat inactivated Mycobacterium bovis activates the complement system to protect against tuberculosis. PLoS ONE. 2014;9(5): e98048. doi: 10.1371/journal.pone.0098048 24842853
-
(2014)
PLoS ONE
, vol.9
, Issue.5
, pp. e98048
-
-
Beltrán-Beck, B.1
De La Fuente, J.2
Garrido, J.M.3
Aranaz, A.4
Sevilla, I.5
Villar, M.6
-
9
-
-
0031241486
-
Bovine tuberculosis in free-ranging white-tailed deer from Michigan
-
Schmitt SM, Fitzgerald SD, Cooley TM, Bruning-Fann CS, Sullivan L, Berry D, et al. Bovine tuberculosis in free-ranging white-tailed deer from Michigan. J Wildl Dis. 1997;33:749–58. 9391958
-
(1997)
J Wildl Dis
, vol.33
, pp. 749-758
-
-
Schmitt, S.M.1
Fitzgerald, S.D.2
Cooley, T.M.3
Bruning-Fann, C.S.4
Sullivan, L.5
Berry, D.6
-
10
-
-
0036719624
-
The status of Mycobacterium bovis infection in UK wild mammals: A review
-
Delahay RJ, De Leeuw ANS, Barlow AM, Clifton-Hadley RS, Cheeseman CL, The status of Mycobacterium bovis infection in UK wild mammals: A review. Vet J. 2002;164:90–105. 12359464
-
(2002)
Vet J
, vol.164
, pp. 90-105
-
-
Delahay, R.J.1
De Leeuw, A.N.S.2
Barlow, A.M.3
Clifton-Hadley, R.S.4
Cheeseman, C.L.5
-
11
-
-
84886843794
-
Temporal trend of tuberculosis in wild ungulates from mediterranean Spain
-
Vicente J, Barasona JA, Acevedo P, Ruiz-Fons JF, Boadella M, Diez-Delgado I, et al. Temporal trend of tuberculosis in wild ungulates from mediterranean Spain. Transbound Emerg Dis. 2013;60:92–103. doi: 10.1111/tbed.12167 24171854
-
(2013)
Transbound Emerg Dis
, vol.60
, pp. 92-103
-
-
Vicente, J.1
Barasona, J.A.2
Acevedo, P.3
Ruiz-Fons, J.F.4
Boadella, M.5
Diez-Delgado, I.6
-
12
-
-
84937513865
-
Epidemiology and control of Mycobacterium bovis infection in brushtail possums (Trichosurus vulpecula), the primary wildlife host of bovine tuberculosis in New Zealand
-
Nugent G, Buddle BM, Knowles G, Epidemiology and control of Mycobacterium bovis infection in brushtail possums (Trichosurus vulpecula), the primary wildlife host of bovine tuberculosis in New Zealand. N Z Vet J. 2015; 63:28–41. doi: 10.1080/00480169.2014.963791 25290902
-
(2015)
N Z Vet J
, vol.63
, pp. 28-41
-
-
Nugent, G.1
Buddle, B.M.2
Knowles, G.3
-
13
-
-
84929004398
-
The wild side of disease control at the wildlife-livestock-human interface: a review
-
Gortazar C, Diez-Delgado I, Barasona JA, Vicente J, de la Fuente J, Boadella M, The wild side of disease control at the wildlife-livestock-human interface: a review. Front Vet Sci. 2015;1:27.
-
(2015)
Front Vet Sci
, vol.1
, pp. 27
-
-
Gortazar, C.1
Diez-Delgado, I.2
Barasona, J.A.3
Vicente, J.4
de la Fuente, J.5
Boadella, M.6
-
14
-
-
33845683474
-
Who puts the tubercle in tuberculosis?
-
Russell DG, Who puts the tubercle in tuberculosis? Nat Rev Microbiol. 2007;5:39–47. 17160001
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 39-47
-
-
Russell, D.G.1
-
15
-
-
84897827763
-
Association between spoligotype-VNTR types and virulence of Mycobacterium bovis in cattle
-
Garbaccio S, Macias A, Shimizu E, Paolicchi F, Pezzone N, Magnano G, et al. Association between spoligotype-VNTR types and virulence of Mycobacterium bovis in cattle. Virulence. 2014;5:297–302. doi: 10.4161/viru.27193 24398919
-
(2014)
Virulence
, vol.5
, pp. 297-302
-
-
Garbaccio, S.1
Macias, A.2
Shimizu, E.3
Paolicchi, F.4
Pezzone, N.5
Magnano, G.6
-
16
-
-
0032508046
-
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
-
Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, Harris D, et al. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature. 1998;393:537–44. 9634230
-
(1998)
Nature
, vol.393
, pp. 537-544
-
-
Cole, S.T.1
Brosch, R.2
Parkhill, J.3
Garnier, T.4
Churcher, C.5
Harris, D.6
-
17
-
-
77952841173
-
Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved
-
Comas I, Chakravartti J, Small PM, Galagan J, Niemann S, Kremer K, et al. Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved. Nat Genet. 2010;42:498–503. doi: 10.1038/ng.590 20495566
-
(2010)
Nat Genet
, vol.42
, pp. 498-503
-
-
Comas, I.1
Chakravartti, J.2
Small, P.M.3
Galagan, J.4
Niemann, S.5
Kremer, K.6
-
18
-
-
84884995578
-
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
-
Comas I, Coscolla M, Luo T, Borrell S, Holt KE, Kato-Maeda M, et al. Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans. Nat Genet. 2013;45:1176–82. doi: 10.1038/ng.2744 23995134
-
(2013)
Nat Genet
, vol.45
, pp. 1176-1182
-
-
Comas, I.1
Coscolla, M.2
Luo, T.3
Borrell, S.4
Holt, K.E.5
Kato-Maeda, M.6
-
19
-
-
0037596510
-
The complete genome sequence of Mycobacterium bovis
-
Garnier T, Eiglmeier K, Camus J-C, Medina N, Mansoor H, Pryor M, et al. The complete genome sequence of Mycobacterium bovis. Proc Natl Acad Sci. 2003;100:7877–82. 12788972
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 7877-7882
-
-
Garnier, T.1
Eiglmeier, K.2
Camus, J.-C.3
Medina, N.4
Mansoor, H.5
Pryor, M.6
-
20
-
-
84898811330
-
Genomic insights into tuberculosis
-
Galagan JE, Genomic insights into tuberculosis. Nat Rev Gen. 2014;15:307–20.
-
(2014)
Nat Rev Gen
, vol.15
, pp. 307-320
-
-
Galagan, J.E.1
-
21
-
-
84905661582
-
Evolutionary history of tuberculosis shaped by conserved mutations in the PhoPR virulence regulator
-
Gonzalo-Asensio J, Malaga W, Pawlik A, Astarie-Dequeker C, Passemar C, Moreau F, et al. Evolutionary history of tuberculosis shaped by conserved mutations in the PhoPR virulence regulator. Proc Natl Acad Sci U S A. 2014;111:11491–6. doi: 10.1073/pnas.1406693111 25049399
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 11491-11496
-
-
Gonzalo-Asensio, J.1
Malaga, W.2
Pawlik, A.3
Astarie-Dequeker, C.4
Passemar, C.5
Moreau, F.6
-
22
-
-
84908094033
-
Farm-level risk factors for the occurrence, new infection or persistence of tuberculosis in cattle herds from South-Central Spain
-
Martínez-López B, Barasona JA, Gortázar C, Rodríguez-Prieto V, Sánchez-Vizcaíno JM, Vicente J, Farm-level risk factors for the occurrence, new infection or persistence of tuberculosis in cattle herds from South-Central Spain. Prev Vet Med. 2014;116:268–78. doi: 10.1016/j.prevetmed.2013.11.002 24299905
-
(2014)
Prev Vet Med
, vol.116
, pp. 268-278
-
-
Martínez-López, B.1
Barasona, J.A.2
Gortázar, C.3
Rodríguez-Prieto, V.4
Sánchez-Vizcaíno, J.M.5
Vicente, J.6
-
23
-
-
19944425917
-
Molecular characterization of Mycobacterium tuberculosis complex isolates from wild ungulates in south-central Spain
-
Gortazar C, Vicente J, Samper S, Garrido JM, Fernandez-de-Mera IG, Gavin P, et al. Molecular characterization of Mycobacterium tuberculosis complex isolates from wild ungulates in south-central Spain. Vet Res. 2005;36:43–52. 15610722
-
(2005)
Vet Res
, vol.36
, pp. 43-52
-
-
Gortazar, C.1
Vicente, J.2
Samper, S.3
Garrido, J.M.4
Fernandez-de-Mera, I.G.5
Gavin, P.6
-
24
-
-
0030911908
-
Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology
-
Kamerbeek J, Schouls L, Kolk A, vanAgterveld M, vanSoolingen D, Kuijper S, et al. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol. 1997;35:907–14. 9157152
-
(1997)
J Clin Microbiol
, vol.35
, pp. 907-914
-
-
Kamerbeek, J.1
Schouls, L.2
Kolk, A.3
vanAgterveld, M.4
vanSoolingen, D.5
Kuijper, S.6
-
25
-
-
33750086013
-
Detecting emerging strains of tuberculosis by using spoligotypes
-
Tanaka MM, Francis AR, Detecting emerging strains of tuberculosis by using spoligotypes. Proc Natl Acad Sci U S A. 2006;103:15266–71. 17015836
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 15266-15271
-
-
Tanaka, M.M.1
Francis, A.R.2
-
26
-
-
85015565700
-
-
Kulldorff M. SaTScan User Guide for version 6.0 2005. Available at: www.satscan.org.
-
-
-
-
27
-
-
0344436032
-
Mycobacterium tuberculosis subsp. caprae subsp. nov.: A taxonomic study of a new member of the Mycobacterium tuberculosis complex isolated from goats in Spain
-
Aranaz A, Liebana E, Gomez-Mampaso E, Galán JC, Cousins D, Ortega A, et al. Mycobacterium tuberculosis subsp. caprae subsp. nov.: A taxonomic study of a new member of the Mycobacterium tuberculosis complex isolated from goats in Spain. Int J Syst Bacteriol. 1999;49:1263–73. 10425790
-
(1999)
Int J Syst Bacteriol
, vol.49
, pp. 1263-1273
-
-
Aranaz, A.1
Liebana, E.2
Gomez-Mampaso, E.3
Galán, J.C.4
Cousins, D.5
Ortega, A.6
-
28
-
-
19944425917
-
Molecular characterization of Mycobacterium tuberculosis complex isolates from wild ungulates in south-central Spain
-
Gortazar C, Vicente J, Samper S, Garrido JM, Fernandez-de-Mera IG, Gavin P, et al. Molecular characterization of Mycobacterium tuberculosis complex isolates from wild ungulates in south-central Spain. Vet Res. 2005;36:43–52. 15610722
-
(2005)
Vet Res
, vol.36
, pp. 43-52
-
-
Gortazar, C.1
Vicente, J.2
Samper, S.3
Garrido, J.M.4
Fernandez-de-Mera, I.G.5
Gavin, P.6
-
29
-
-
0141476314
-
Elevation of Mycobacterium tuberculosis subsp. caprae Aranaz et al. 1999 to species rank as Mycobacterium caprae comb. nov., sp. nov
-
Aranaz A, Cousins D, Mateos A, Domínguez L, Elevation of Mycobacterium tuberculosis subsp. caprae Aranaz et al. 1999 to species rank as Mycobacterium caprae comb. nov., sp. nov. Int J Syst Evol Microbiol. 2003;53:1785–9. 14657105
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 1785-1789
-
-
Aranaz, A.1
Cousins, D.2
Mateos, A.3
Domínguez, L.4
-
30
-
-
79952330969
-
Mycobacterium caprae infection in livestock and wildlife, Spain
-
Rodríguez S, Bezos J, Romero B, de Juan L, Álvarez J, Castellanos E, et al. Mycobacterium caprae infection in livestock and wildlife, Spain. Emerg Infect Dis. 2011;17:532–5. doi: 10.3201/eid1703.100618 21392452
-
(2011)
Emerg Infect Dis
, vol.17
, pp. 532-535
-
-
Rodríguez, S.1
Bezos, J.2
Romero, B.3
de Juan, L.4
Álvarez, J.5
Castellanos, E.6
-
31
-
-
0025952233
-
Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: Evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis
-
Van Soolingen D, Hermans PWM, De Haas PEW, Soll DR, Van Embden JDA, Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: Evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. J Clin Microbiol. 1991;29:2578–86. 1685494
-
(1991)
J Clin Microbiol
, vol.29
, pp. 2578-2586
-
-
Van Soolingen, D.1
Hermans, P.W.M.2
De Haas, P.E.W.3
Soll, D.R.4
Van Embden, J.D.A.5
-
32
-
-
77956967295
-
Using the Velvet de novo assembler for short-read sequencing technologies
-
Zerbino DR, Using the Velvet de novo assembler for short-read sequencing technologies. Curr Protoc Bioinform. 2010; Chapter 11: Unit 11.5.
-
(2010)
Curr Protoc Bioinform
-
-
Zerbino, D.R.1
-
33
-
-
84869750558
-
BG7: A New Approach for Bacterial Genome Annotation Designed for Next Generation Sequencing Data
-
Pareja-Tobes P, Manrique M, Pareja-Tobes E, Pareja E, Tobes R, BG7: A New Approach for Bacterial Genome Annotation Designed for Next Generation Sequencing Data. PLoS ONE. 2012;7(11): e49239. doi: 10.1371/journal.pone.0049239 23185310
-
(2012)
PLoS ONE
, vol.7
, Issue.11
, pp. e49239
-
-
Pareja-Tobes, P.1
Manrique, M.2
Pareja-Tobes, E.3
Pareja, E.4
Tobes, R.5
-
34
-
-
84914145858
-
Gene calling and bacterial genome annotation with BG7
-
Tobes R, Pareja-Tobes P, Manrique M, Pareja-Tobes E, Kovach E, Alekhin A, et al. Gene calling and bacterial genome annotation with BG7. Methods Mol Biol: Humana Press Inc.; 2015. p. 177–89. doi: 10.1007/978-1-4939-1720-4_12 25343866
-
(2015)
Methods Mol Biol
, pp. 177-189
-
-
Tobes, R.1
Pareja-Tobes, P.2
Manrique, M.3
Pareja-Tobes, E.4
Kovach, E.5
Alekhin, A.6
-
35
-
-
58149183697
-
ARDB—Antibiotic resistance genes database
-
Liu B, Pop M, ARDB—Antibiotic resistance genes database. Nucleic Acids Res. 2009;37:D443–7. doi: 10.1093/nar/gkn656 18832362
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D443-7
-
-
Liu, B.1
Pop, M.2
-
36
-
-
85008440572
-
Complete genome sequence of field isolates of Mycobacterium bovis and Mycobacterium caprae from naturally infected Eurasian wild boar (Sus scrofa)
-
de la Fuente J., Díez-Delgado I., Contreras M., Vicente J., Cabezas-Cruz A., Manrique M., Tobes R., López V., Romero B., Domínguez L., Garrido J.M., Juste R., Gortazar C., Complete genome sequence of field isolates of Mycobacterium bovis and Mycobacterium caprae from naturally infected Eurasian wild boar (Sus scrofa). Genome Announc. 2015;3(3):e00247–15. doi: 10.1128/genomeA.00247-15 26112781
-
(2015)
Genome Announc
, vol.3
, Issue.3
, pp. e00247-15
-
-
de la Fuente, J.1
Díez-Delgado, I.2
Contreras, M.3
Vicente, J.4
Cabezas-Cruz, A.5
Manrique, M.6
Tobes, R.7
López, V.8
Romero, B.9
Domínguez, L.10
Garrido, J.M.11
Juste, R.12
Gortazar, C.13
-
37
-
-
84965190732
-
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
-
Treangen TJ, Ondov BD, Koren S, Phillippy AM, The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes. Genome Biol. 2014;15:524. 25410596
-
(2014)
Genome Biol
, vol.15
, pp. 524
-
-
Treangen, T.J.1
Ondov, B.D.2
Koren, S.3
Phillippy, A.M.4
-
38
-
-
84864462812
-
EvolView, an online tool for visualizing, annotating and managing phylogenetic trees
-
Zhang H, Gao S, Lercher MJ, Hu S, Chen WH, EvolView, an online tool for visualizing, annotating and managing phylogenetic trees. Nucleic Acids Res. 2012;40:W569–72. doi: 10.1093/nar/gks576 22695796
-
(2012)
Nucleic Acids Res
, vol.40
, pp. W569-72
-
-
Zhang, H.1
Gao, S.2
Lercher, M.J.3
Hu, S.4
Chen, W.H.5
-
39
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
-
Katoh K, Standley DM, MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Mol Biol Evol. 2013;30:772–80. doi: 10.1093/molbev/mst010 23329690
-
(2013)
Mol Biol Evol
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
40
-
-
0242578620
-
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
-
Guindon S, Gascuel O, A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood. Syst Biol. 2003;52:696–704. 14530136
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
41
-
-
33745256005
-
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
-
Anisimova M, Gascuel O, Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. Syst Biol. 2006;55:539–52. 16785212
-
(2006)
Syst Biol
, vol.55
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
43
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M, Gojobori T, Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol. 1986;3:418–26. 3444411
-
(1986)
Mol Biol Evol
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
44
-
-
77957233168
-
Datamonkey 2010: A suite of phylogenetic analysis tools for evolutionary biology
-
Delport W, Poon AFY, Frost SDW, Kosakovsky Pond SL, Datamonkey 2010: A suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics. 2010;26:2455–7. doi: 10.1093/bioinformatics/btq429 20671151
-
(2010)
Bioinformatics
, vol.26
, pp. 2455-2457
-
-
Delport, W.1
Poon, A.F.Y.2
Frost, S.D.W.3
Kosakovsky, P.S.L.4
-
45
-
-
17744396121
-
Not so different after all: A comparison of methods for detecting amino acid sites under selection
-
Kosakovsky Pond SL, Frost SDW, Not so different after all: A comparison of methods for detecting amino acid sites under selection. Mol Biol Evol. 2005;22:1208–22. 15703242
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1208-1222
-
-
Kosakovsky, P.S.L.1
Frost, S.D.W.2
-
46
-
-
69949116837
-
Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods
-
Leversen NA, de Souza GA, Målen H, Prasad S, Jonassen I, Wiker HG, Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods. Microbiol. 2009;155:2375–83.
-
(2009)
Microbiol
, vol.155
, pp. 2375-2383
-
-
Leversen, N.A.1
de Souza, G.A.2
Målen, H.3
Prasad, S.4
Jonassen, I.5
Wiker, H.G.6
-
47
-
-
75449087213
-
High spoligotype diversity within a Mycobacterium bovis population: Clues to understanding the demography of the pathogen in Europe
-
Rodríguez S, Romero B, Bezos J, de Juan L, Álvarez J, Castellanos E, et al. High spoligotype diversity within a Mycobacterium bovis population: Clues to understanding the demography of the pathogen in Europe. Vet Microbiol. 2010;141:89–95. doi: 10.1016/j.vetmic.2009.08.007 19720476
-
(2010)
Vet Microbiol
, vol.141
, pp. 89-95
-
-
Rodríguez, S.1
Romero, B.2
Bezos, J.3
de Juan, L.4
Álvarez, J.5
Castellanos, E.6
-
48
-
-
84877973468
-
Zoonotic Mycobacterium bovis-induced tuberculosis in humans
-
Müller B, Dürr S, Alonso S, Hattendorf J, Laisse CJM, Parsons SDC, et al. Zoonotic Mycobacterium bovis-induced tuberculosis in humans. Emerg Infect Dis. 2013;19:899–908. doi: 10.3201/eid1906.120543 23735540
-
(2013)
Emerg Infect Dis
, vol.19
, pp. 899-908
-
-
Müller, B.1
Dürr, S.2
Alonso, S.3
Hattendorf, J.4
Laisse, C.J.M.5
Parsons, S.D.C.6
-
49
-
-
84910680369
-
Mycobacterium caprae infection in humans
-
Prodinger WM, Indra A, Koksalan OK, Kilicaslan Z, Richter E, Mycobacterium caprae infection in humans. Expert Rev Anti-Infect Ther. 2014;12:1501–13. doi: 10.1586/14787210.2014.974560 25345680
-
(2014)
Expert Rev Anti-Infect Ther
, vol.12
, pp. 1501-1513
-
-
Prodinger, W.M.1
Indra, A.2
Koksalan, O.K.3
Kilicaslan, Z.4
Richter, E.5
-
50
-
-
84903591275
-
Recent Advances in Defining the Immunoproteome of Mycobacterium tuberculosis
-
Kunnath-Velayudhan S, Porcelli SA, Recent Advances in Defining the Immunoproteome of Mycobacterium tuberculosis. Front Immunol. 2013;4:335. doi: 10.3389/fimmu.2013.00335 24130562
-
(2013)
Front Immunol
, vol.4
, pp. 335
-
-
Kunnath-Velayudhan, S.1
Porcelli, S.A.2
-
51
-
-
84904757822
-
Targeting type VII/ESX secretion systems for development of novel antimycobacterial drugs
-
Bottai D, Serafini A, Cascioferro A, Brosch R, Manganelli R, Targeting type VII/ESX secretion systems for development of novel antimycobacterial drugs. Curr Pharm Des. 2014; 20: 4346–56. 24245757
-
(2014)
Curr Pharm Des
, vol.20
, pp. 4346-4356
-
-
Bottai, D.1
Serafini, A.2
Cascioferro, A.3
Brosch, R.4
Manganelli, R.5
-
52
-
-
80855141176
-
Comparative genomics of ESX genes from clinical isolates of Mycobacterium tuberculosis provides evidence for gene conversion and epitope variation
-
Uplekar S, Heym B, Friocourt V, Rougemont J, Cole ST, Comparative genomics of ESX genes from clinical isolates of Mycobacterium tuberculosis provides evidence for gene conversion and epitope variation. Infect Immun. 2011;79:4042–9. doi: 10.1128/IAI.05344-11 21807910
-
(2011)
Infect Immun
, vol.79
, pp. 4042-4049
-
-
Uplekar, S.1
Heym, B.2
Friocourt, V.3
Rougemont, J.4
Cole, S.T.5
-
53
-
-
84863116545
-
EspD is critical for the virulence-mediating ESX-1 secretion system in Mycobacterium tuberculosis
-
Chen JM, Boy-Röttger S, Dhar N, Sweeney N, Buxton RS, Pojer F, et al. EspD is critical for the virulence-mediating ESX-1 secretion system in Mycobacterium tuberculosis. J Bacteriol. 2012;194:884–93. doi: 10.1128/JB.06417-11 22155774
-
(2012)
J Bacteriol
, vol.194
, pp. 884-893
-
-
Chen, J.M.1
Boy-Röttger, S.2
Dhar, N.3
Sweeney, N.4
Buxton, R.S.5
Pojer, F.6
-
54
-
-
81755187214
-
Early secreted antigen ESAT-6 of Mycobacterium tuberculosis promotes protective T helper 17 cell responses in a toll-like receptor-2-dependent manner
-
Chatterjee S, Dwivedi VP, Singh Y, Siddiqui I, Sharma P, van Kaer L, et al. Early secreted antigen ESAT-6 of Mycobacterium tuberculosis promotes protective T helper 17 cell responses in a toll-like receptor-2-dependent manner. PLoS Pathog. 2011;7(11): e1002378. doi: 10.1371/journal.ppat.1002378 22102818
-
(2011)
PLoS Pathog
, vol.7
, Issue.11
, pp. e1002378
-
-
Chatterjee, S.1
Dwivedi, V.P.2
Singh, Y.3
Siddiqui, I.4
Sharma, P.5
van Kaer, L.6
-
55
-
-
84887270553
-
Mycobacterium tuberculosis Type VII Secreted Effector EsxH Targets Host ESCRT to Impair Trafficking
-
Mehra A, Zahra A, Thompson V, Sirisaengtaksin N, Wells A, Porto M, et al. Mycobacterium tuberculosis Type VII Secreted Effector EsxH Targets Host ESCRT to Impair Trafficking. PLoS Pathog. 2013;9(10): e1003734. doi: 10.1371/journal.ppat.1003734 24204276
-
(2013)
PLoS Pathog
, vol.9
, Issue.10
, pp. e1003734
-
-
Mehra, A.1
Zahra, A.2
Thompson, V.3
Sirisaengtaksin, N.4
Wells, A.5
Porto, M.6
-
56
-
-
79751523912
-
Host expression of methylmalonyl-CoA mutase and tuberculosis: A missing link?
-
de la Fuente J, Gortazar C, Vicente J, Villar M, Host expression of methylmalonyl-CoA mutase and tuberculosis: A missing link? Med Hypotheses. 2011;76:361–4. doi: 10.1016/j.mehy.2010.10.040 21084167
-
(2011)
Med Hypotheses
, vol.76
, pp. 361-364
-
-
de la Fuente, J.1
Gortazar, C.2
Vicente, J.3
Villar, M.4
-
57
-
-
37449003688
-
Role of the methylcitrate cycle in propionate metabolism and detoxification in Mycobacterium smegmatis
-
Upton AM, McKinney JD, Role of the methylcitrate cycle in propionate metabolism and detoxification in Mycobacterium smegmatis. Microbiol. 2007;153:3973–82.
-
(2007)
Microbiol
, vol.153
, pp. 3973-3982
-
-
Upton, A.M.1
McKinney, J.D.2
-
58
-
-
33645093159
-
Genes differentially expressed in oropharyngeal tonsils and mandibular lymph nodes of tuberculous and nontuberculous European wild boars naturally exposed to Mycobacterium bovis
-
Naranjo V, Höfle U, Vicente J, Martín MP, Ruiz-Fons F, Gortazar C, et al. Genes differentially expressed in oropharyngeal tonsils and mandibular lymph nodes of tuberculous and nontuberculous European wild boars naturally exposed to Mycobacterium bovis. FEMS Immunol Med Microbiol. 2006;46:298–312. 16487312
-
(2006)
FEMS Immunol Med Microbiol
, vol.46
, pp. 298-312
-
-
Naranjo, V.1
Höfle, U.2
Vicente, J.3
Martín, M.P.4
Ruiz-Fons, F.5
Gortazar, C.6
-
59
-
-
33746293824
-
Characterization of selected genes upregulated in non-tuberculous European wild boar as possible correlates of resistance to Mycobacterium bovis infection
-
Naranjo V, Ayoubi P, Vicente J, Ruiz-Fons F, Gortazar C, Kocan KM, et al. Characterization of selected genes upregulated in non-tuberculous European wild boar as possible correlates of resistance to Mycobacterium bovis infection. Vet Microbiol. 2006;116:224–31. 16672181
-
(2006)
Vet Microbiol
, vol.116
, pp. 224-231
-
-
Naranjo, V.1
Ayoubi, P.2
Vicente, J.3
Ruiz-Fons, F.4
Gortazar, C.5
Kocan, K.M.6
-
60
-
-
44049083098
-
Influence of methylmalonyl-CoA mutase alleles on resistance to bovine tuberculosis in the European wild boar (Sus scrofa)
-
Naranjo V, Acevedo-Whitehouse K, Vicente J, Gortazar C, De La Fuente J, Influence of methylmalonyl-CoA mutase alleles on resistance to bovine tuberculosis in the European wild boar (Sus scrofa). Anim Genet. 2008;39:316–20. doi: 10.1111/j.1365-2052.2008.01725.x 18454807
-
(2008)
Anim Genet
, vol.39
, pp. 316-320
-
-
Naranjo, V.1
Acevedo-Whitehouse, K.2
Vicente, J.3
Gortazar, C.4
De La Fuente, J.5
-
61
-
-
0037013820
-
Mycobacterium tuberculosis mammalian cell entry operon (mce) homologs in Mycobacterium other than tuberculosis (MOTT)
-
Haile Y, Caugant DA, Bjune G, Wiker HG, Mycobacterium tuberculosis mammalian cell entry operon (mce) homologs in Mycobacterium other than tuberculosis (MOTT). FEMS Immunol Med Microbiol. 2002;33:125–32. 12052567
-
(2002)
FEMS Immunol Med Microbiol
, vol.33
, pp. 125-132
-
-
Haile, Y.1
Caugant, D.A.2
Bjune, G.3
Wiker, H.G.4
-
62
-
-
0036123962
-
Fibronectin attachment protein is necessary for efficient attachment and invasion of epithelial cells by Mycobacterium avium subsp. paratuberculosis
-
Secott TE, Lin TL, Wu CC, Fibronectin attachment protein is necessary for efficient attachment and invasion of epithelial cells by Mycobacterium avium subsp. paratuberculosis. Infect Immun. 2002;70:2670–5. 11953410
-
(2002)
Infect Immun
, vol.70
, pp. 2670-2675
-
-
Secott, T.E.1
Lin, T.L.2
Wu, C.C.3
-
63
-
-
84890935599
-
Genetic characterization of antiplasmid immunity through a type III-A CRISPR-cas system
-
Hatoum-Aslan A, Maniv I, Samai P, Marraffini LA, Genetic characterization of antiplasmid immunity through a type III-A CRISPR-cas system. J Bacteriol. 2014;196:310–7. doi: 10.1128/JB.01130-13 24187086
-
(2014)
J Bacteriol
, vol.196
, pp. 310-317
-
-
Hatoum-Aslan, A.1
Maniv, I.2
Samai, P.3
Marraffini, L.A.4
-
64
-
-
34447515950
-
Mycobacterial UvrD1 is a Ku-dependent DNA helicase that plays a role in multiple DNA repair events, including double-strand break repair
-
Sinha KM, Stephanou NC, Gao F, Glickman MS, Shuman S, Mycobacterial UvrD1 is a Ku-dependent DNA helicase that plays a role in multiple DNA repair events, including double-strand break repair. J Biol Chem. 2007;282:15114–25. 17376770
-
(2007)
J Biol Chem
, vol.282
, pp. 15114-15125
-
-
Sinha, K.M.1
Stephanou, N.C.2
Gao, F.3
Glickman, M.S.4
Shuman, S.5
-
65
-
-
77954005502
-
A role for the class a penicillin-binding protein PonA2 in the survival of Mycobacterium smegmatis under conditions of nonreplication
-
Patru MM, Pavelka MS, JrA role for the class a penicillin-binding protein PonA2 in the survival of Mycobacterium smegmatis under conditions of nonreplication. J Bacteriol. 2010;192:3043–54. doi: 10.1128/JB.00025-10 20400545
-
(2010)
J Bacteriol
, vol.192
, pp. 3043-3054
-
-
Patru, M.M.1
Pavelka, M.S.2
-
66
-
-
80052172629
-
Perspective on sequence evolution of microsatellite locus (CCG) nin Rv0050 gene from Mycobacterium tuberculosis
-
Qin L, Wang J, Zheng R, Lu J, Yang H, Liu Z, et al. Perspective on sequence evolution of microsatellite locus (CCG) nin Rv0050 gene from Mycobacterium tuberculosis. BMC Evol Biol. 2011;11:247. doi: 10.1186/1471-2148-11-247 21878130
-
(2011)
BMC Evol Biol
, vol.11
, pp. 247
-
-
Qin, L.1
Wang, J.2
Zheng, R.3
Lu, J.4
Yang, H.5
Liu, Z.6
-
67
-
-
0031736387
-
Multimodular penicillin-binding proteins: an enigmatic family of orthologs and paralogs
-
Goffin C, Ghuysen JM, Multimodular penicillin-binding proteins: an enigmatic family of orthologs and paralogs. Microbiol Mol Biol Rev. 1998;62:1079–93. 9841666
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, pp. 1079-1093
-
-
Goffin, C.1
Ghuysen, J.M.2
-
68
-
-
39149104344
-
Penicillin-binding proteins and beta-lactam resistance
-
Zapun A, Contreras-Martel C, Vernet T, Penicillin-binding proteins and beta-lactam resistance. FEMS Microbiol Rev. 2008;32:361–85. doi: 10.1111/j.1574-6976.2007.00095.x 18248419
-
(2008)
FEMS Microbiol Rev
, vol.32
, pp. 361-385
-
-
Zapun, A.1
Contreras-Martel, C.2
Vernet, T.3
-
69
-
-
82355175801
-
Bacterial proteins with cleaved or uncleaved signal peptides of the general secretory pathway
-
de Souza GA, Leversen NA, Målen H, Wiker HG, Bacterial proteins with cleaved or uncleaved signal peptides of the general secretory pathway. J Proteomics. 2011;75:502–10. doi: 10.1016/j.jprot.2011.08.016 21920479
-
(2011)
J Proteomics
, vol.75
, pp. 502-510
-
-
de Souza, G.A.1
Leversen, N.A.2
Målen, H.3
Wiker, H.G.4
|