-
1
-
-
0037331103
-
RING finger ubiquitin protein ligases: Implications for tumorigenesis, metastasis and for molecular targets in cancer
-
Fang, S., Lorick, K. L., Jensen, J. P. & Weissman, A. M. RING finger ubiquitin protein ligases: implications for tumorigenesis, metastasis and for molecular targets in cancer. Semin. Cancer Biol. 13, 5-14 (2003).
-
(2003)
Semin. Cancer Biol.
, vol.13
, pp. 5-14
-
-
Fang, S.1
Lorick, K.L.2
Jensen, J.P.3
Weissman, A.M.4
-
2
-
-
11244351579
-
Function and regulation of cullin-RING ubiquitin ligases
-
Petroski, M. D. & Deshaies, R. J. Function and regulation of cullin-RING ubiquitin ligases. Nat. Rev. Mol. Cell Biol. 6, 9-20 (2005).
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 9-20
-
-
Petroski, M.D.1
Deshaies, R.J.2
-
3
-
-
33745674468
-
Drug discovery in the ubiquitinproteasome system
-
Nalepa, G., Rolfe, M. & Harper, J. W. Drug discovery in the ubiquitinproteasome system. Nat. Rev. Drug Discov. 5, 596-613 (2006).
-
(2006)
Nat. Rev. Drug Discov.
, vol.5
, pp. 596-613
-
-
Nalepa, G.1
Rolfe, M.2
Harper, J.W.3
-
4
-
-
78649653568
-
Structural assembly of cullin-RING ubiquitin ligase complexes
-
Zimmerman, E. S., Schulman, B. A. & Zheng, N. Structural assembly of cullin-RING ubiquitin ligase complexes. Curr. Opin. Struct. Biol. 20, 714-721 (2010).
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 714-721
-
-
Zimmerman, E.S.1
Schulman, B.A.2
Zheng, N.3
-
5
-
-
79955416634
-
The cullin protein family
-
Sarikas, A., Hartmann, T. & Pan, Z. Q. The cullin protein family. Genome Biol. 12, 220 (2011).
-
(2011)
Genome Biol.
, vol.12
, pp. 220
-
-
Sarikas, A.1
Hartmann, T.2
Pan, Z.Q.3
-
6
-
-
79953068658
-
Structural regulation of cullin-RING ubiquitin ligase complexes
-
Duda, D. M. et al. Structural regulation of cullin-RING ubiquitin ligase complexes. Curr. Opin. Struct. Biol. 21, 257-264 (2011).
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 257-264
-
-
Duda, D.M.1
-
7
-
-
0033279836
-
SCF and Cullin/Ring H2-based ubiquitin ligases
-
Deshaies, R. J. SCF and Cullin/Ring H2-based ubiquitin ligases. Annu. Rev. Cell Dev. Biol. 15, 435-467 (1999).
-
(1999)
Annu. Rev. Cell Dev. Biol.
, vol.15
, pp. 435-467
-
-
Deshaies, R.J.1
-
8
-
-
4444318673
-
The SCF ubiquitin ligase: Insights into a molecular machine
-
Cardozo, T. & Pagano, M. The SCF ubiquitin ligase: insights into a molecular machine. Nat. Rev. Mol. Cell Biol. 5, 739-751 (2004).
-
(2004)
Nat. Rev. Mol. Cell Biol.
, vol.5
, pp. 739-751
-
-
Cardozo, T.1
Pagano, M.2
-
9
-
-
0034682718
-
Structure of a c-Cbl-UbcH7 complex: RING domain function in ubiquitin-protein ligases
-
Zheng, N., Wang, P., Jeffrey, P. D. & Pavletich, N. P. Structure of a c-Cbl-UbcH7 complex: RING domain function in ubiquitin-protein ligases. Cell 102, 533-539 (2000).
-
(2000)
Cell
, vol.102
, pp. 533-539
-
-
Zheng, N.1
Wang, P.2
Jeffrey, P.D.3
Pavletich, N.P.4
-
10
-
-
0034712842
-
A Nedd8 conjugation pathway is essential for proteolytic targeting of p27Kip1 by ubiquitination
-
Podust, V. N. et al. A Nedd8 conjugation pathway is essential for proteolytic targeting of p27Kip1 by ubiquitination. Proc. Natl Acad. Sci. USA 97, 4579-4584 (2000).
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 4579-4584
-
-
Podust, V.N.1
-
11
-
-
0034117282
-
Nedd8 modification of cul-1 activates SCF(beta(TrCP))-dependent ubiquitination of IkappaBalpha
-
Read, M. A. et al. Nedd8 modification of cul-1 activates SCF(beta(TrCP))-dependent ubiquitination of IkappaBalpha. Mol. Cell. Biol. 20, 2326-2333 (2000).
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 2326-2333
-
-
Read, M.A.1
-
12
-
-
0037189519
-
The NEDD8 pathway is essential for SCF(beta-TrCP)-mediated ubiquitination and processing of the NF-kappa B precursor p105
-
Amir, R. E., Iwai, K. & Ciechanover, A. The NEDD8 pathway is essential for SCF(beta-TrCP)-mediated ubiquitination and processing of the NF-kappa B precursor p105. J. Biol. Chem. 277, 23253-23259 (2002).
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 23253-23259
-
-
Amir, R.E.1
Iwai, K.2
Ciechanover, A.3
-
13
-
-
53349121021
-
Multimodal activation of the ubiquitin ligase SCF by Nedd8 conjugation
-
Saha, A. & Deshaies, R. J. Multimodal activation of the ubiquitin ligase SCF by Nedd8 conjugation. Mol. Cell 32, 21-31 (2008).
-
(2008)
Mol. Cell
, vol.32
, pp. 21-31
-
-
Saha, A.1
Deshaies, R.J.2
-
14
-
-
50449108516
-
Structural insights into NEDD8 activation of cullin-RING ligases: Conformational control of conjugation
-
Duda, D. M. et al. Structural insights into NEDD8 activation of cullin-RING ligases: conformational control of conjugation. Cell 134, 995-1006 (2008).
-
(2008)
Cell
, vol.134
, pp. 995-1006
-
-
Duda, D.M.1
-
15
-
-
77956296853
-
Glutamine deamidation and dysfunction of ubiquitin/NEDD8 induced by a bacterial effector family
-
Cui, J. et al. Glutamine deamidation and dysfunction of ubiquitin/NEDD8 induced by a bacterial effector family. Science 329, 1215-1218 (2010).
-
(2010)
Science
, vol.329
, pp. 1215-1218
-
-
Cui, J.1
-
16
-
-
78149309149
-
Pathogenic bacteria target NEDD8-conjugated cullins to hijack host-cell signaling pathways
-
Jubelin, G. et al. Pathogenic bacteria target NEDD8-conjugated cullins to hijack host-cell signaling pathways. PLoS Pathog. 6, e1001128 (2010).
-
(2010)
PLoS Pathog.
, vol.6
-
-
Jubelin, G.1
-
17
-
-
77957790866
-
The bacterial effector Cif interferes with SCF ubiquitin ligase function by inhibiting deneddylation of Cullin1
-
Morikawa, H. et al. The bacterial effector Cif interferes with SCF ubiquitin ligase function by inhibiting deneddylation of Cullin1. Biochem. Biophys. Res. Commun. 401, 268-274 (2010).
-
(2010)
Biochem. Biophys. Res. Commun.
, vol.401
, pp. 268-274
-
-
Morikawa, H.1
-
18
-
-
84878262127
-
The cyclomodulin cycle inhibiting factor (CIF) alters cullin neddylation dynamics
-
Toro, T. B., Toth, J. I. & Petroski, M. D. The cyclomodulin cycle inhibiting factor (CIF) alters cullin neddylation dynamics. J. Biol. Chem. 288, 14716-14726 (2013).
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 14716-14726
-
-
Toro, T.B.1
Toth, J.I.2
Petroski, M.D.3
-
19
-
-
77955381399
-
Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics
-
Leitner, A. et al. Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics. Mol. Cell. Proteomics 9, 1634-1649 (2010).
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 1634-1649
-
-
Leitner, A.1
-
20
-
-
77149146167
-
Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry
-
Chen, Z. A. et al. Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry. EMBO J. 29, 717-726 (2010).
-
(2010)
EMBO J.
, vol.29
, pp. 717-726
-
-
Chen, Z.A.1
-
21
-
-
84866095385
-
Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry
-
Herzog, F. et al. Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry. Science 337, 1348-1352 (2012).
-
(2012)
Science
, vol.337
, pp. 1348-1352
-
-
Herzog, F.1
-
22
-
-
84870712519
-
Mapping the structural topology of the yeast 19S proteasomal regulatory particle using chemical cross-linking and probabilistic modeling
-
Kao, A. et al. Mapping the structural topology of the yeast 19S proteasomal regulatory particle using chemical cross-linking and probabilistic modeling. Mol. Cell. Proteomics 11, 1566-1577 (2012).
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 1566-1577
-
-
Kao, A.1
-
23
-
-
84861102204
-
The molecular architecture of the eukaryotic chaperonin TRiC/CCT
-
Leitner, A. et al. The molecular architecture of the eukaryotic chaperonin TRiC/CCT. Structure 20, 814-825 (2012).
-
(2012)
Structure
, vol.20
, pp. 814-825
-
-
Leitner, A.1
-
24
-
-
84879967659
-
Comparative cross-linking and mass spectrometry of an intact F-type ATPase suggest a role for phosphorylation
-
Schmidt, C. et al. Comparative cross-linking and mass spectrometry of an intact F-type ATPase suggest a role for phosphorylation. Nat. Commun. 4, 1985 (2013).
-
(2013)
Nat. Commun.
, vol.4
, pp. 1985
-
-
Schmidt, C.1
-
25
-
-
84907323467
-
Molecular architecture of the 40SeIF1eIF3 translation initiation complex
-
Erzberger, J. P. et al. Molecular architecture of the 40SeIF1eIF3 translation initiation complex. Cell 158, 1123-1135 (2014).
-
(2014)
Cell
, vol.158
, pp. 1123-1135
-
-
Erzberger, J.P.1
-
26
-
-
84910595462
-
Structural characterization by cross-linking reveals the detailed architecture of a coatomer-related heptameric module from the nuclear pore complex
-
Shi, Y. et al. Structural characterization by cross-linking reveals the detailed architecture of a coatomer-related heptameric module from the nuclear pore complex. Mol. Cell. Proteomics 13, 2927-2943 (2014).
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 2927-2943
-
-
Shi, Y.1
-
27
-
-
84857134729
-
Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach
-
Lasker, K. et al. Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach. Proc. Natl Acad. Sci. USA 109, 1380-1387 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 1380-1387
-
-
Lasker, K.1
-
28
-
-
84908190461
-
Molecular architecture of photoreceptor phosphodiesterase elucidated by chemical cross-linking and integrative modeling
-
Zeng-Elmore, X. et al. Molecular architecture of photoreceptor phosphodiesterase elucidated by chemical cross-linking and integrative modeling. J. Mol. Biol. 426, 3713-3728 (2014).
-
(2014)
J. Mol. Biol.
, vol.426
, pp. 3713-3728
-
-
Zeng-Elmore, X.1
-
29
-
-
78651092959
-
Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes
-
M110.002212
-
Kao, A. et al. Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes. Mol. Cell. Proteomics 10, M110.002212 (2011).
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Kao, A.1
-
30
-
-
84921469305
-
A new in vivo cross-linking mass spectrometry platform to define protein-protein interactions in living cells
-
Kaake, R. M. et al. A new in vivo cross-linking mass spectrometry platform to define protein-protein interactions in living cells. Mol. Cell. Proteomics 13, 3533-3543 (2014).
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 3533-3543
-
-
Kaake, R.M.1
-
31
-
-
84894278740
-
Developing new isotope-coded mass spectrometry-cleavable cross-linkers for elucidating protein structures
-
Yu, C., Kandur, W., Kao, A., Rychnovsky, S. & Huang, L. Developing new isotope-coded mass spectrometry-cleavable cross-linkers for elucidating protein structures. Anal. Chem. 86, 2099-2106 (2014).
-
(2014)
Anal. Chem.
, vol.86
, pp. 2099-2106
-
-
Yu, C.1
Kandur, W.2
Kao, A.3
Rychnovsky, S.4
Huang, L.5
-
32
-
-
18344391432
-
Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF ubiquitin ligase complex
-
Zheng, N. et al. Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF ubiquitin ligase complex. Nature 416, 703-709 (2002).
-
(2002)
Nature
, vol.416
, pp. 703-709
-
-
Zheng, N.1
-
33
-
-
34248566788
-
SCFFbxl3 controls the oscillation of the circadian clock by directing the degradation of cryptochrome proteins
-
Busino, L. et al. SCFFbxl3 controls the oscillation of the circadian clock by directing the degradation of cryptochrome proteins. Science 316, 900-904 (2007).
-
(2007)
Science
, vol.316
, pp. 900-904
-
-
Busino, L.1
-
34
-
-
34248525919
-
The after-hours mutant reveals a role for Fbxl3 in determining mammalian circadian period
-
Godinho, S. I. et al. The after-hours mutant reveals a role for Fbxl3 in determining mammalian circadian period. Science 316, 897-900 (2007).
-
(2007)
Science
, vol.316
, pp. 897-900
-
-
Godinho, S.I.1
-
35
-
-
34249097203
-
Circadian mutant Overtime reveals F-box protein FBXL3 regulation of cryptochrome and period gene expression
-
Siepka, S. M. et al. Circadian mutant Overtime reveals F-box protein FBXL3 regulation of cryptochrome and period gene expression. Cell 129, 1011-1023 (2007).
-
(2007)
Cell
, vol.129
, pp. 1011-1023
-
-
Siepka, S.M.1
-
36
-
-
84875899177
-
SCF(FBXL3) ubiquitin ligase targets cryptochromes at their cofactor pocket
-
Xing, W. et al. SCF(FBXL3) ubiquitin ligase targets cryptochromes at their cofactor pocket. Nature 496, 64-68 (2013).
-
(2013)
Nature
, vol.496
, pp. 64-68
-
-
Xing, W.1
-
37
-
-
0034644650
-
Conjugation of Nedd8 to CUL1 enhances the ability of the ROC1-CUL1 complex to promote ubiquitin polymerization
-
Wu, K., Chen, A. & Pan, Z. Q. Conjugation of Nedd8 to CUL1 enhances the ability of the ROC1-CUL1 complex to promote ubiquitin polymerization. J. Biol. Chem. 275, 32317-32324 (2000).
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 32317-32324
-
-
Wu, K.1
Chen, A.2
Pan, Z.Q.3
-
38
-
-
84907025333
-
A comparative cross-linking strategy to probe conformational changes in protein complexes
-
Schmidt, C. & Robinson, C. V. A comparative cross-linking strategy to probe conformational changes in protein complexes. Nat. Protoc. 9, 2224-2236 (2014).
-
(2014)
Nat. Protoc.
, vol.9
, pp. 2224-2236
-
-
Schmidt, C.1
Robinson, C.V.2
-
39
-
-
84903125623
-
Structure of a RING E3 trapped in action reveals ligation mechanism for the ubiquitin-like protein NEDD8
-
Scott, D. C. et al. Structure of a RING E3 trapped in action reveals ligation mechanism for the ubiquitin-like protein NEDD8. Cell 157, 1671-1684 (2014).
-
(2014)
Cell
, vol.157
, pp. 1671-1684
-
-
Scott, D.C.1
-
40
-
-
27644473051
-
Expression, purification, and characterization of the E1 for human NEDD8, the heterodimeric APPBP1-UBA3 complex
-
Huang, D. T. & Schulman, B. A. Expression, purification, and characterization of the E1 for human NEDD8, the heterodimeric APPBP1-UBA3 complex. Methods Enzymol. 398, 9-20 (2005).
-
(2005)
Methods Enzymol.
, vol.398
, pp. 9-20
-
-
Huang, D.T.1
Schulman, B.A.2
|