-
1
-
-
84864559183
-
Genetic resources collections of leafy vegetables (lettuce, spinach, chicory, artichoke, asparagus, lamb's lettuce, rhubarb and rocket salad): Composition and gaps
-
van Treuren, R., Coquin, P. & Lohwasser, U. Genetic resources collections of leafy vegetables (lettuce, spinach, chicory, artichoke, asparagus, lamb's lettuce, rhubarb and rocket salad): composition and gaps. Genet. Resour. Crop Ev. 59, 981-997 (2011).
-
(2011)
Genet. Resour. Crop Ev.
, vol.59
, pp. 981-997
-
-
Van Treuren, R.1
Coquin, P.2
Lohwasser, U.3
-
2
-
-
52449116165
-
Evaluation of oxalate concentration in the U.S. Spinach germplasm collection
-
Mou, B. Q. Evaluation of oxalate concentration in the U.S. spinach germplasm collection. HortScience 43, 1690-1693 (2008).
-
(2008)
HortScience
, vol.43
, pp. 1690-1693
-
-
Mou, B.Q.1
-
3
-
-
49449102346
-
Characterization of a resistance locus (Pfs-1) to the spinach downy mildew pathogen (Peronospora farinosa f.sp.spinaciae) and development of a molecular marker linked to Pfs-1
-
Irish, B. M., Correll, J. C., Feng, C., Bentley, T. & Reyes, B. G. Characterization of a resistance locus (Pfs-1) to the spinach downy mildew pathogen (Peronospora farinosa f.sp.spinaciae) and development of a molecular marker linked to Pfs-1. Phytopathology 98, 894-900 (2008).
-
(2008)
Phytopathology
, vol.98
, pp. 894-900
-
-
Irish, B.M.1
Correll, J.C.2
Feng, C.3
Bentley, T.4
Reyes, B.G.5
-
4
-
-
33745186269
-
A genetic linkage map of Spinacia oleracea and localization of a sex determination locus
-
Khattak, J. Z. K., Torp, A. M. & Andersen, S. B. A genetic linkage map of Spinacia oleracea and localization of a sex determination locus. Euphytica 148, 311-318 (2006).
-
(2006)
Euphytica
, vol.148
, pp. 311-318
-
-
Khattak, J.Z.K.1
Torp, A.M.2
Andersen, S.B.3
-
5
-
-
79955928736
-
Mapping of the genes for dioecism and monoecism in Spinacia oleracea L.: Evidence that both genes are closely linked
-
Onodera, Y. et al. Mapping of the genes for dioecism and monoecism in Spinacia oleracea L.: evidence that both genes are closely linked. Plant Cell Rep. 30, 965-971 (2011).
-
(2011)
Plant Cell Rep.
, vol.30
, pp. 965-971
-
-
Onodera, Y.1
-
6
-
-
84894067970
-
Molecular evidence that the genes for dioecism and monoecism in Spinacia oleracea L. Are located at different loci in a chromosomal region
-
Yamamoto, K. et al. Molecular evidence that the genes for dioecism and monoecism in Spinacia oleracea L. are located at different loci in a chromosomal region. Heredity 112, 317-324 (2014).
-
(2014)
Heredity
, vol.112
, pp. 317-324
-
-
Yamamoto, K.1
-
7
-
-
0027508633
-
Cloning and development expression of the sucrose phosphate synthase gene from spinach
-
Klein, R., Crafts-Brandner, S. & Salvucci, M. Cloning and development expression of the sucrose phosphate synthase gene from spinach. Planta 190, 498-510 (1993).
-
(1993)
Planta
, vol.190
, pp. 498-510
-
-
Klein, R.1
Crafts-Brandner, S.2
Salvucci, M.3
-
8
-
-
78651455382
-
A spinach BAC library for marker development, gene discovery, and functional genomics
-
Feng, C., Correll, J. C. & Bluhm, B. H. A spinach BAC library for marker development, gene discovery, and functional genomics. Phytopathology 100, S35 (2010).
-
(2010)
Phytopathology
, vol.100
, pp. S35
-
-
Feng, C.1
Correll, J.C.2
Bluhm, B.H.3
-
9
-
-
84925884340
-
Molecular cloning and characterization of pathogenesis-related protein family 10 gene from spinach (SoPR10)
-
Bai, X., Long, J., He, X., Li, S. & Xu, H. Molecular cloning and characterization of pathogenesis-related protein family 10 gene from spinach (SoPR10). Biosci. Biotechnol. Biochem. 78, 780-786 (2014).
-
(2014)
Biosci. Biotechnol. Biochem.
, vol.78
, pp. 780-786
-
-
Bai, X.1
Long, J.2
He, X.3
Li, S.4
Xu, H.5
-
10
-
-
67149141785
-
Agrobacterium-mediated transformation of spinach (Spinacia oleracea) with Bacillus thuringiensis cry1Ac gene for resistance against two common vegetable pests
-
Bao, J. H. et al. Agrobacterium-mediated transformation of spinach (Spinacia oleracea) with Bacillus thuringiensis cry1Ac gene for resistance against two common vegetable pests. Plant Biotechnology 26, 249-254 (2009).
-
(2009)
Plant Biotechnology
, vol.26
, pp. 249-254
-
-
Bao, J.H.1
-
11
-
-
51249171246
-
Nuclear DNA content of some important plant species
-
Arumuganathan, K. & Earle, E. D. Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9, 208-218 (1991).
-
(1991)
Plant Mol. Biol. Rep.
, vol.9
, pp. 208-218
-
-
Arumuganathan, K.1
Earle, E.D.2
-
12
-
-
84892801409
-
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)
-
Dohm, J. C. et al. The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature 505, 546-549 (2014).
-
(2014)
Nature
, vol.505
, pp. 546-549
-
-
Dohm, J.C.1
-
13
-
-
84940487073
-
Exploiting single-molecule transcript sequencing for eukaryotic gene prediction
-
Minoche, A. E. et al. Exploiting single-molecule transcript sequencing for eukaryotic gene prediction. Genome Biol. 16, 184 (2015).
-
(2015)
Genome Biol.
, vol.16
, pp. 184
-
-
Minoche, A.E.1
-
15
-
-
0034072147
-
Detection of a linkage of the four dominant mildew resistance genes "m1M2M3M4" in spinach from the wild type Spinacia turkestanica
-
Hanke, S., Seehous, C. & Radies, M. Detection of a linkage of the four dominant mildew resistance genes "M1M2M3M4" in spinach from the wild type Spinacia turkestanica. Gartenbauwissenschaft 65, 73-78 (2000).
-
(2000)
Gartenbauwissenschaft
, vol.65
, pp. 73-78
-
-
Hanke, S.1
Seehous, C.2
Radies, M.3
-
16
-
-
52449084941
-
Leafminer resistance in spinach
-
Mou, B. Q. Leafminer resistance in spinach. HortScience 43, 1716-1719 (2008).
-
(2008)
HortScience
, vol.43
, pp. 1716-1719
-
-
Mou, B.Q.1
-
17
-
-
52449094106
-
Screening for resistance to leaf spot diseases of spinach
-
Mou, B. Q., Koike, S. T. & du Toit, L. J. Screening for resistance to leaf spot diseases of spinach. HortScience 43, 1706-1710 (2008).
-
(2008)
HortScience
, vol.43
, pp. 1706-1710
-
-
Mou, B.Q.1
Koike, S.T.2
Du Toit, L.J.3
-
18
-
-
84940907209
-
BUSCO: Assessing genome assembly and annotation completeness with single-copy orthologs
-
Simao, F. A., Waterhouse, R. M., Ioannidis, P., Kriventseva, E. V. & Zdobnov, E. M. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31, 3210-3212 (2015).
-
(2015)
Bioinformatics
, vol.31
, pp. 3210-3212
-
-
Simao, F.A.1
Waterhouse, R.M.2
Ioannidis, P.3
Kriventseva, E.V.4
Zdobnov, E.M.5
-
19
-
-
84871910383
-
Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis
-
Liu, J. et al. Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis. Plant Cell 24, 4333-4345 (2002).
-
(2002)
Plant Cell
, vol.24
, pp. 4333-4345
-
-
Liu, J.1
-
20
-
-
84965187842
-
Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice
-
Zhang, Y. C. et al. Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice. Genome Biol. 15, 512 (2014).
-
(2014)
Genome Biol.
, vol.15
, pp. 512
-
-
Zhang, Y.C.1
-
21
-
-
84899045771
-
Genome-wide discovery and characterization of maize long non-coding RNAs
-
Li, L. et al. Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biol. 15, R40 (2014).
-
(2014)
Genome Biol.
, vol.15
, pp. R40
-
-
Li, L.1
-
22
-
-
42049110949
-
Flavonoid content and antioxidant capacity of spinach genotypes determined by high-performance liquid chromatography/mass spectrometry
-
Cho, J. M., Howard, L. R., Prior, R. L. & Morelock, T. Flavonoid content and antioxidant capacity of spinach genotypes determined by high-performance liquid chromatography/mass spectrometry. J. Sci. Food Agric. 88, 1099-1106 (2008).
-
(2008)
J. Sci. Food Agric.
, vol.88
, pp. 1099-1106
-
-
Cho, J.M.1
Howard, L.R.2
Prior, R.L.3
Morelock, T.4
-
23
-
-
84922395331
-
The genome of the stress-tolerant wild tomato species Solanum pennellii
-
Bolger, A. et al. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nat. Genet. 46, 1034-1038 (2014).
-
(2014)
Nat. Genet.
, vol.46
, pp. 1034-1038
-
-
Bolger, A.1
-
24
-
-
84923019049
-
De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
-
Li, Y. et al. De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits. Nat. Biotechnol. 32, 1045-1052 (2014).
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 1045-1052
-
-
Li, Y.1
-
25
-
-
34250104703
-
Plant breeding: Importance of plant secondary metabolites for protection against pathogens and herbivores
-
Wink, M. Plant breeding: importance of plant secondary metabolites for protection against pathogens and herbivores. Theor. Appl. Genet. 75, 225-233 (1988).
-
(1988)
Theor. Appl. Genet.
, vol.75
, pp. 225-233
-
-
Wink, M.1
-
26
-
-
84865573461
-
Patterns and processes in crop domestication: An historical review and quantitative analysis of 203 global food crops
-
Meyer, R. S., DuVal, A. E. & Jensen, H. R. Patterns and processes in crop domestication: an historical review and quantitative analysis of 203 global food crops. New Phytol. 196, 29-48 (2010)
-
(2010)
New Phytol.
, vol.196
, pp. 29-48
-
-
Meyer, R.S.1
DuVal, A.E.2
Jensen, H.R.3
-
27
-
-
79961230772
-
High-throughput Illumina strand-specific RNA sequencing library preparation
-
Zhong, S. et al. High-throughput Illumina strand-specific RNA sequencing library preparation. Cold Spring Harb. Protoc. 2011, 940-949 (2011).
-
(2011)
Cold Spring Harb. Protoc.
, vol.2011
, pp. 940-949
-
-
Zhong, S.1
-
28
-
-
84905049901
-
Trimmomatic: A flexible trimmer for Illumina sequence data
-
Bolger, A. M., Lohse, M. & Usadel, B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114-2120 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
29
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
-
Quast, C. et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 41, D590-D596 (2013).
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D590-D596
-
-
Quast, C.1
-
30
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
-
(2009)
Genome Biol.
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
31
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
Grabherr, M. G. et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29, 644-652 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
-
32
-
-
81555234540
-
IAssembler: A package for de novo assembly of Roche-454/Sanger transcriptome sequences
-
Zheng, Y., Zhao, L., Gao, J. & Fei, Z. iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences. BMC Bioinformatics 12, 453 (2011).
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 453
-
-
Zheng, Y.1
Zhao, L.2
Gao, J.3
Fei, Z.4
-
33
-
-
43349092271
-
A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence
-
Gotoh, O. A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence. Nucleic Acids Res. 36, 2630-2638 (2008).
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2630-2638
-
-
Gotoh, O.1
-
34
-
-
84891783174
-
Activities at the universal protein resource (UniProt)
-
The UniProt Consortium. Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res. 42, D191-D198 (2014).
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D191-D198
-
-
-
35
-
-
84862234802
-
The arabidopsis information resource (TAIR): Improved gene annotation and new tools
-
Lamesch, P. et al. The Arabidopsis Information Resource (TAIR): Improved gene annotation and new tools. Nucleic Acids Res. 40, D1202-D1210 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D1202-D1210
-
-
Lamesch, P.1
-
36
-
-
58149187893
-
The GOA database in 2009-An integrated gene ontology annotation resource
-
Barrell, D. et al. The GOA database in 2009-an integrated Gene Ontology Annotation resource. Nucleic Acids Res. 37, D396-D403 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D396-D403
-
-
Barrell, D.1
-
37
-
-
11244328060
-
The pathway tools software
-
Karp, P. D., Paley, S. & Romero, P. The Pathway Tools software. Bioinformatics 18 Suppl 1, S225-S232 (2002).
-
(2002)
Bioinformatics
, vol.18
, pp. S225-S232
-
-
Karp, P.D.1
Paley, S.2
Romero, P.3
-
38
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
39
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H. et al. The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
40
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura, K. et al. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739 (2011).
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
-
41
-
-
0034334064
-
Assessing reliability of gene clusters from gene expression data
-
Zhang, K. & Zhao, H. Assessing reliability of gene clusters from gene expression data. Funct. Integr. Genomics 1, 156-173 (2000).
-
(2000)
Funct. Integr. Genomics
, vol.1
, pp. 156-173
-
-
Zhang, K.1
Zhao, H.2
-
42
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M. D., McCarthy, D. J. & Smyth, G. K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
43
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
(1995)
-
Benjamini, Y. & Hochberg, Y. (1995) Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. Roy. Statistical Society, Series B 57, 289-300 (1995).
-
(1995)
J. Roy. Statistical Society, Series B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
44
-
-
12344269924
-
GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
-
Boyle, E. I. et al. GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20, 3710-3715 (2004).
-
(2004)
Bioinformatics
, vol.20
, pp. 3710-3715
-
-
Boyle, E.I.1
|