-
1
-
-
51249171246
-
Nuclear DNA content of some important plant species
-
Arumuganathan, K. & Earle, E. D. Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9, 208-218 (1991).
-
(1991)
Plant Mol. Biol. Rep.
, vol.9
, pp. 208-218
-
-
Arumuganathan, K.1
Earle, E.D.2
-
2
-
-
84859566756
-
Palaeohexaploid ancestry for Caryophyllales inferred from extensive gene-based physical and genetic mapping of the sugar beet genome (Beta vulgaris)
-
Dohm, J. C. et al. Palaeohexaploid ancestry for Caryophyllales inferred from extensive gene-based physical and genetic mapping of the sugar beet genome (Beta vulgaris). Plant J. 70, 528-540 (2012).
-
(2012)
Plant J.
, vol.70
, pp. 528-540
-
-
Dohm, J.C.1
-
3
-
-
0002583129
-
Origin of the 'Weisse Schlesische Rübe' (white Silesian beet) and resynthesis of sugar beet
-
Fischer, H. E. Origin of the 'Weisse Schlesische Rübe' (white Silesian beet) and resynthesis of sugar beet. Euphytica 41, 75-80 (1989).
-
(1989)
Euphytica
, vol.41
, pp. 75-80
-
-
Fischer, H.E.1
-
4
-
-
0016351896
-
Genome size and the proportion of repeated nucleotide sequence DNA in plants
-
Flavell, R. B., Bennett, M. D., Smith, J. B. & Smith, D. B. Genome size and the proportion of repeated nucleotide sequence DNA in plants. Biochem. Genet. 12, 257-269 (1974).
-
(1974)
Biochem. Genet.
, vol.12
, pp. 257-269
-
-
Flavell, R.B.1
Bennett, M.D.2
Smith, J.B.3
Smith, D.B.4
-
5
-
-
84969146168
-
-
ed. Bradshaw, J. E., Springer
-
Biancardi, E., McGrath, J. M., Panella, L., Lewellen, R. & Stevanato, P. in Root Tuber Crops Vol. 7 (ed. Bradshaw, J. E.) 173-219 (Springer, 2010)
-
(2010)
Root Tuber Crops
, vol.7
, pp. 173-219
-
-
Biancardi, E.1
McGrath, J.M.2
Panella, L.3
Lewellen, R.4
Stevanato, P.5
-
7
-
-
84868478316
-
A sugar beet (Beta vulgaris L.) reference FISH karyotype for chromosome and chromosome-arm identification, integration of genetic linkage groups and analysis of major repeat family distribution
-
Paesold, S., Borchardt, D., Schmidt, T. & Dechyeva, D. A sugar beet (Beta vulgaris L.) reference FISH karyotype for chromosome and chromosome-arm identification, integration of genetic linkage groups and analysis of major repeat family distribution. Plant J. 72, 600-611 (2012).
-
(2012)
Plant J.
, vol.72
, pp. 600-611
-
-
Paesold, S.1
Borchardt, D.2
Schmidt, T.3
Dechyeva, D.4
-
8
-
-
58149105394
-
Haplotype divergence in Beta vulgarisand microsynteny with sequenced plant genomes
-
Dohm, J. C., Lange, C., Reinhardt, R. & Himmelbauer, H. Haplotype divergence in Beta vulgarisand microsynteny with sequenced plant genomes. PlantJ. 57, 14-26 (2009).
-
(2009)
PlantJ.
, vol.57
, pp. 14-26
-
-
Dohm, J.C.1
Lange, C.2
Reinhardt, R.3
Himmelbauer, H.4
-
9
-
-
36448938389
-
The human phylome
-
Huerta-Cepas, J., Dopazo, H., Dopazo, J. & Gabaldón, T. The human phylome. Genome Biol. 8, R109 (2007)
-
(2007)
Genome Biol.
, vol.8
-
-
Huerta-Cepas, J.1
Dopazo, H.2
Dopazo, J.3
Gabaldón, T.4
-
10
-
-
0037393246
-
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II
-
The Angiosperm Phylogeny Group
-
The Angiosperm Phylogeny Group. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II. Bot. J. Linn. Soc. 141, 399-436 (2003).
-
(2003)
Bot. J. Linn. Soc.
, vol.141
, pp. 399-436
-
-
-
11
-
-
77949494249
-
Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
-
Moore, M. J., Soltis, P. S., Bell, C. D., Burleigh, J. G. & Soltis, D. E. Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots. Proc. Natl Acad. Sci. USA (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
-
-
Moore, M.J.1
Soltis, P.S.2
Bell, C.D.3
Burleigh, J.G.4
Soltis, D.E.5
-
12
-
-
0037312342
-
Isolation and linkage analysis of expressed disease-resistance gene analogues of sugar beet (Beta vulgaris L.)
-
Hunger, S. et al. Isolation and linkage analysis of expressed disease-resistance gene analogues of sugar beet (Beta vulgaris L.). Genome 46, 70-82 (2003).
-
(2003)
Genome
, vol.46
, pp. 70-82
-
-
Hunger, S.1
-
13
-
-
1642544149
-
The absence of TIR-type resistance gene analogues in the sugar beet (Beta vulgaris L.) genome
-
Tian, Y., Fan, L., Thurau, T., Jung, C. & Cai, D. The absence of TIR-type resistance gene analogues in the sugar beet (Beta vulgaris L.) genome. J. Mol. Evol. 58, 40-53 (2004).
-
(2004)
J. Mol. Evol.
, vol.58
, pp. 40-53
-
-
Tian, Y.1
Fan, L.2
Thurau, T.3
Jung, C.4
Cai, D.5
-
14
-
-
34548152965
-
Analysis of DNA polymorphisms in sugar beet (Beta vulgaris L.) and development of an SNP-based map of expressed genes
-
Schneider, K. et al. Analysis of DNA polymorphisms in sugar beet (Beta vulgaris L.) and development of an SNP-based map of expressed genes. Theor. Appl. Genet. 115, 601-615 (2007).
-
(2007)
Theor. Appl. Genet.
, vol.115
, pp. 601-615
-
-
Schneider, K.1
-
16
-
-
84862667686
-
The role ofa pseudo-response regulator geneinlife cycle adaptation and domestication of beet
-
Pin, P. A. et al. The role ofa pseudo-response regulator geneinlife cycle adaptation and domestication of beet. Curr. Biol. 22, 1095-1101 (2012).
-
(2012)
Curr. Biol.
, vol.22
, pp. 1095-1101
-
-
Pin, P.A.1
-
17
-
-
84877658412
-
Progress toward understanding heterosisincrop plants
-
Schnable, P. S. & Springer, N. M. Progress toward understanding heterosisincrop plants. Annu. Rev. Plant Biol. 64, 71-88 (2013).
-
(2013)
Annu. Rev. Plant Biol.
, vol.64
, pp. 71-88
-
-
Schnable, P.S.1
Springer, N.M.2
-
18
-
-
0038555321
-
A bacterial artificial chromosome (BAC) library of sugar beet and a physical map of the region encompassing the bolting gene B
-
Hohmann, U. et al. A bacterial artificial chromosome (BAC) library of sugar beet and a physical map of the region encompassing the bolting gene B. Mol. Genet. Genomics 269, 126-136 (2003).
-
(2003)
Mol. Genet. Genomics
, vol.269
, pp. 126-136
-
-
Hohmann, U.1
-
19
-
-
55549101298
-
Construction and characterization of a sugar beet (Beta vulgaris) fosmid library
-
Lange, C., Holtgräwe, D., Schulz, B., Weisshaar, B. & Himmelbauer, H. Construction and characterization of a sugar beet (Beta vulgaris) fosmid library. Genome 51, 948-951 (2008).
-
(2008)
Genome
, vol.51
, pp. 948-951
-
-
Lange, C.1
Holtgräwe, D.2
Schulz, B.3
Weisshaar, B.4
Himmelbauer, H.5
-
20
-
-
84942887758
-
SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler
-
Luo, R. et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 1, 18 (2012).
-
(2012)
Gigascience
, vol.1
, pp. 18
-
-
Luo, R.1
-
21
-
-
79951530130
-
Scaffolding pre-assembled contigs using SSPACE
-
Boetzer, M., Henkel, C. V., Jansen, H. J., Butler, D. & Pirovano, W. Scaffolding pre-assembled contigs using SSPACE. Bioinformatics 27, 578-579 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 578-579
-
-
Boetzer, M.1
Henkel, C.V.2
Jansen, H.J.3
Butler, D.4
Pirovano, W.5
-
22
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
23
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
24
-
-
0036673472
-
Automateddenovo identification ofrepeat sequence families in sequenced genomes
-
Bao, Z. & Eddy, S. R. Automateddenovo identification ofrepeat sequence families in sequenced genomes. Genome Res. 12, 1269-1276 (2002).
-
(2002)
Genome Res.
, vol.12
, pp. 1269-1276
-
-
Bao, Z.1
Eddy, S.R.2
-
25
-
-
29144455282
-
De novo identification of repeat families in large genomes
-
Price, A. L., Jones, N. C. & Pevzner, P. A. De novo identification of repeat families in large genomes. Bioinformatics 21, i351-i358 (2005).
-
(2005)
Bioinformatics
, vol.21
-
-
Price, A.L.1
Jones, N.C.2
Pevzner, P.A.3
-
26
-
-
0033555906
-
Tandem repeats finder: A program to analyze DNA sequences
-
Benson, G. Tandem repeats finder:a program to analyze DNA sequences. Nucleic Acids Res. 27, 573-580 (1999).
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 573-580
-
-
Benson, G.1
-
27
-
-
40049091292
-
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
-
Stanke, M., Diekhans, M., Baertsch, R. & Haussler, D. Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics 24, 637-644 (2008).
-
(2008)
Bioinformatics
, vol.24
, pp. 637-644
-
-
Stanke, M.1
Diekhans, M.2
Baertsch, R.3
Haussler, D.4
-
28
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genesingenomicsequence
-
Lowe, T. M. & Eddy, S. R. tRNAscan-SE: a program for improved detection of transfer RNA genesingenomicsequence. Nucleic Acids Res. 25, 955-964 (1997).
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
29
-
-
34250665888
-
RNAmmer: Consistent and rapid annotation of ribosomal RNA genes
-
Lagesen, K. et al. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35, 3100-3108 (2007).
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 3100-3108
-
-
Lagesen, K.1
-
30
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 215, 403-410 (1990).
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
31
-
-
84874266637
-
Rfam 11.0: 10 years of RNA families
-
Burge, S. W. et al. Rfam 11. 0: 10 years of RNA families. Nucleic Acids Res. 41, D226-D232 (2013).
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Burge, S.W.1
-
32
-
-
0037260415
-
Plant snoRNA database
-
Brown, J. W. S. et al. Plant snoRNA database. Nucleic AcidsRes. 31, 432-435 (2003).
-
(2003)
Nucleic AcidsRes.
, vol.31
, pp. 432-435
-
-
Brown, J.W.S.1
-
33
-
-
0345865009
-
GenBank: Update
-
Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J. & Wheeler, D. L. GenBank: update. Nucleic Acids Res. 32, D23-D26 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
34
-
-
18044371378
-
The ASRG database: Identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing
-
Wang, B.-B. & Brendel, V. The ASRG database: identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing. Genome Biol. 5, R102 (2004).
-
(2004)
Genome Biol.
, vol.5
-
-
Wang, B.-B.1
Brendel, V.2
-
35
-
-
46249126320
-
DupTree: A program for large-scale phylogenetic analyses using gene tree parsimony
-
Wehe, A., Bansal, M. S., Burleigh, J. G. & Eulenstein, O. DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony. Bioinformatics 24, 1540-1541 (2008).
-
(2008)
Bioinformatics
, vol.24
, pp. 1540-1541
-
-
Wehe, A.1
Bansal, M.S.2
Burleigh, J.G.3
Eulenstein, O.4
-
36
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon, S. et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3. 0. Syst. Biol. 59, 307-321 (2010).
-
(2010)
Syst. Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
-
37
-
-
84860137835
-
MCScanX: A toolkit for detection and evolutionary analysis of gene synteny and collinearity
-
Wang, Y. et al. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res. 40, e49 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Wang, Y.1
-
38
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei, M. & Gojobori, T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3, 418-426 (1986).
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
39
-
-
0034800374
-
InterProScan-an integration platform for the signature-recognition methods in InterPro
-
Zdobnov, E. M. & Apweiler, R. InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17, 847-848 (2001).
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
40
-
-
84860833500
-
Reorganizing the protein space at the Universal Protein Resource (UniProt)
-
UniProt Consortium.
-
UniProt Consortium. Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res. 40, D71-D75 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
-
41
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. & Tanabe, M. KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res. 40, D109-D114 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
42
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov, R. L. et al. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4, 41 (2003).
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
-
43
-
-
84863494168
-
A genome-wide comparison of NB-LRR type of resistance gene analogs (RGA) in the plant kingdom
-
Kim, J. et al. A genome-wide comparison of NB-LRR type of resistance gene analogs (RGA) in the plant kingdom. Mol. Cells 33, 385-392 (2012).
-
(2012)
Mol. Cells
, vol.33
, pp. 385-392
-
-
Kim, J.1
-
44
-
-
84858602406
-
InterPro in 2011: New developments in the family and domain prediction database
-
Hunter, S. et al. InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. 40, D306-D312 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Hunter, S.1
-
45
-
-
84355166513
-
The Medicago genome provides insight into the evolution of rhizobial symbioses
-
Young, N. D. et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature 480, 520-524 (2011).
-
(2011)
Nature
, vol.480
, pp. 520-524
-
-
Young, N.D.1
-
46
-
-
77955874692
-
Sucrose transporters of higher plants
-
Kühn, C. & Grof, C. P. L. Sucrose transporters of higher plants. Curr. Opin. Plant Biol. 13, 287-297 (2010).
-
(2010)
Curr. Opin. Plant Biol.
, vol.13
, pp. 287-297
-
-
Kühn, C.1
Grof, C.P.L.2
|