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Volumn 112, Issue 48, 2015, Pages 14912-14917

Genomic insights into the evolutionary origin of Myxozoa within Cnidaria

Author keywords

Cnidaria; Genome evolution; Myxozoa; Parasite; Polypodium

Indexed keywords

DNA; RNA; TRANSCRIPTOME;

EID: 84948670959     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1511468112     Document Type: Article
Times cited : (178)

References (73)
  • 1
    • 0028981217 scopus 로고
    • The biology and life cycle of the Rhizocephala (Cirripedia)
    • Hoeg JT (1995) The biology and life cycle of the Rhizocephala (Cirripedia). J Mar. Biol Assoc UK 75(3):517-550.
    • (1995) J Mar. Biol Assoc UK , vol.75 , Issue.3 , pp. 517-550
    • Hoeg, J.T.1
  • 2
    • 0344069500 scopus 로고    scopus 로고
    • Dicyemids are higher animals
    • Kobayashi M, Furuya H, Holland P W H (1999) Dicyemids are higher animals. Nature 401(6755):762-762.
    • (1999) Nature , vol.401 , Issue.6755 , pp. 762-762
    • Kobayashi, M.1    Furuya, H.2    Holland, P.W.H.3
  • 3
    • 0034953452 scopus 로고    scopus 로고
    • Recent advances in our knowledge of the Myxozoa
    • Kent ML, et al. (2001) Recent advances in our knowledge of the Myxozoa. J Eukaryot Microbiol 48(4):395-413.
    • (2001) J Eukaryot Microbiol , vol.48 , Issue.4 , pp. 395-413
    • Kent, M.L.1
  • 4
    • 0002695105 scopus 로고
    • Actinomyxidies, nouveau groupe de Mesozoaires parent des Myxosporidies
    • ͆tolc A (1899) Actinomyxidies, nouveau groupe de Mesozoaires parent des Myxosporidies. Bull Intl Acad Sci Boheme 22:1-12.
    • (1899) Bull Intl Acad Sci Boheme , vol.22 , pp. 1-12
    • ͆tolc, A.1
  • 5
    • 0000654208 scopus 로고
    • L'interpretation des Cnidosporidies et la valeur taxonomique de leur cnidome. Leur cycle comparé à la phase larvaire des Narcomeduses Cuninides
    • Weill R (1938) L'interpretation des Cnidosporidies et la valeur taxonomique de leur cnidome. Leur cycle comparé à la phase larvaire des Narcomeduses Cuninides. Travaux de la Station Zoologique de Wimereaux 13:727-744.
    • (1938) Travaux de la Station Zoologique de Wimereaux , vol.13 , pp. 727-744
    • Weill, R.1
  • 6
    • 33645768797 scopus 로고    scopus 로고
    • Myxozoan genera: Definition and notes on taxonomy, lifecycle terminology and pathogenic species
    • Lom J, Dyková I (2006) Myxozoan genera: Definition and notes on taxonomy, lifecycle terminology and pathogenic species. Folia Parasitol (Praha) 53(1):1-36.
    • (2006) Folia Parasitol (Praha) , vol.53 , Issue.1 , pp. 1-36
    • Lom, J.1    Dyková, I.2
  • 7
    • 0021203561 scopus 로고
    • Biology contravenes taxonomy in the myxozoa: New discoveries show alternation of invertebrate and vertebrate hosts
    • Wolf K, Markiw ME (1984) Biology contravenes taxonomy in the myxozoa: New discoveries show alternation of invertebrate and vertebrate hosts. Science 225(4669):1449-1452.
    • (1984) Science , vol.225 , Issue.4669 , pp. 1449-1452
    • Wolf, K.1    Markiw, M.E.2
  • 9
    • 0000159645 scopus 로고
    • Light and electron-microscopic observations on the route of the triactinomyxon-sporoplasm of Myxobolus cerebralis from epidermis into rainbow trout cartilage
    • El-Matbouli M, Hoffmann RW, Mandok C (1995) Light and electron-microscopic observations on the route of the triactinomyxon-sporoplasm of Myxobolus cerebralis from epidermis into rainbow trout cartilage. J Fish Biol 46(6):919-935.
    • (1995) J Fish Biol , vol.46 , Issue.6 , pp. 919-935
    • El-Matbouli, M.1    Hoffmann, R.W.2    Mandok, C.3
  • 10
    • 0036276264 scopus 로고    scopus 로고
    • Orphan worm finds a home: Buddenbrockia is a myxozoan
    • Monteiro AS, Okamura B, Holland P W H (2002) Orphan worm finds a home: Buddenbrockia is a myxozoan. Mol Biol Evol 19:968-971.
    • (2002) Mol Biol Evol , vol.19 , pp. 968-971
    • Monteiro, A.S.1    Okamura, B.2    Holland, P.W.H.3
  • 11
    • 84899656694 scopus 로고    scopus 로고
    • Diversification and repeated morphological transitions in endoparasitic cnidarians (Myxozoa: Malacosporea)
    • Hartikainen H, Gruhl A, Okamura B (2014) Diversification and repeated morphological transitions in endoparasitic cnidarians (Myxozoa: Malacosporea). Mol Phylogenet Evol 76:261-269.
    • (2014) Mol Phylogenet Evol , vol.76 , pp. 261-269
    • Hartikainen, H.1    Gruhl, A.2    Okamura, B.3
  • 12
    • 0018526250 scopus 로고
    • The parasitic coelenterate, Polypodium hydriforme USSOV, from the eggs of the American acipenseriform Polyodon spathula
    • Raikova EV, Suppes VC, Hoffman GL (1979) The parasitic coelenterate, Polypodium hydriforme USSOV, from the eggs of the American acipenseriform Polyodon spathula. J Parasitol 65(5):804-810.
    • (1979) J Parasitol , vol.65 , Issue.5 , pp. 804-810
    • Raikova, E.V.1    Suppes, V.C.2    Hoffman, G.L.3
  • 13
    • 78649343343 scopus 로고    scopus 로고
    • The phylogenetic position of Myxozoa: Exploring conflicting signals in phylogenomic and ribosomal datasets
    • Evans NM, Holder MT, Barbeitos MS, Okamura B, Cartwright P (2010) The phylogenetic position of Myxozoa: Exploring conflicting signals in phylogenomic and ribosomal datasets. Mol Biol Evol 27(12):2733-2746.
    • (2010) Mol Biol Evol , vol.27 , Issue.12 , pp. 2733-2746
    • Evans, N.M.1    Holder, M.T.2    Barbeitos, M.S.3    Okamura, B.4    Cartwright, P.5
  • 14
    • 84931341220 scopus 로고    scopus 로고
    • The road to Cnidaria: History of phylogeny of the Myxozoa
    • Foox J, Siddall ME (2015) The road to Cnidaria: History of phylogeny of the Myxozoa. J Parasitol 101(3):269-274.
    • (2015) J Parasitol , vol.101 , Issue.3 , pp. 269-274
    • Foox, J.1    Siddall, M.E.2
  • 17
    • 0012811658 scopus 로고
    • Geschlechtliche Form, Phylogenie und systematische Stellung von Polypodium hydriforme Ussov
    • Lipin A (1925) Geschlechtliche Form, Phylogenie und systematische Stellung von Polypodium hydriforme Ussov. Zool Jahrb Anat 47:541-635.
    • (1925) Zool Jahrb Anat , vol.47 , pp. 541-635
    • Lipin, A.1
  • 18
    • 0012814726 scopus 로고
    • On the systematic position of Polypodium hydriforme Ussov (Coelenterata)
    • eds Koltum VM, Stepanjants SD Zoological Institute of Academy of Sciences of USSR, Leningrad
    • Raikova EV (1988) On the systematic position of Polypodium hydriforme Ussov (Coelenterata). Porifera and Cnidaria: Contemporary State and Perspectives of Investigations, eds Koltum VM, Stepanjants SD (Zoological Institute of Academy of Sciences of USSR, Leningrad), pp 116-122.
    • (1988) Porifera and Cnidaria: Contemporary State and Perspectives of Investigations , pp. 116-122
    • Raikova, E.V.1
  • 19
    • 0029597418 scopus 로고
    • The demise of a phylum of protists: Phylogeny of Myxozoa and other parasitic cnidaria
    • Siddall ME, Martin DS, Bridge D, Desser SS, Cone DK (1995) The demise of a phylum of protists: Phylogeny of Myxozoa and other parasitic cnidaria. J Parasitol 81(6):961-967.
    • (1995) J Parasitol , vol.81 , Issue.6 , pp. 961-967
    • Siddall, M.E.1    Martin, D.S.2    Bridge, D.3    Desser, S.S.4    Cone, D.K.5
  • 20
    • 0027943362 scopus 로고
    • Molecular evidence that the myxozoan protists are metazoans
    • Smothers JF, Von Dohlen CD, Smith LH, Jr, Spall RD (1994) Molecular evidence that the myxozoan protists are metazoans. Science 265(5179):1719-1721.
    • (1994) Science , vol.265 , Issue.5179 , pp. 1719-1721
    • Smothers, J.F.1    Von Dohlen, C.D.2    Smith, L.H.3    Spall, R.D.4
  • 21
    • 44349098019 scopus 로고    scopus 로고
    • Phylogenetic placement of the enigmatic parasite, Polypodium hydriforme, within the Phylum Cnidaria
    • Evans NM, Lindner A, Raikova EV, Collins AG, Cartwright P (2008) Phylogenetic placement of the enigmatic parasite, Polypodium hydriforme, within the Phylum Cnidaria. BMC Evol Biol 8(1):139.
    • (2008) BMC Evol Biol , vol.8 , Issue.1 , pp. 139
    • Evans, N.M.1    Lindner, A.2    Raikova, E.V.3    Collins, A.G.4    Cartwright, P.5
  • 22
    • 0033102131 scopus 로고    scopus 로고
    • Long-branch abstractions
    • Siddall ME, Whiting MF (1999) Long-branch abstractions. Cladistics 15(1):9-24.
    • (1999) Cladistics , vol.15 , Issue.1 , pp. 9-24
    • Siddall, M.E.1    Whiting, M.F.2
  • 23
    • 0037711134 scopus 로고    scopus 로고
    • Myxozoa, Polypodium, and the origin of the Bilateria: The phylogenetic position of "Endocnidozoa" in the light of the rediscovery of Buddenbrockia
    • Zrzavý J, Hypša V (2003) Myxozoa, Polypodium, and the origin of the Bilateria: The phylogenetic position of "Endocnidozoa" in the light of the rediscovery of Buddenbrockia. Cladistics 19(3):164-169.
    • (2003) Cladistics , vol.19 , Issue.3 , pp. 164-169
    • Zrzavý, J.1    Hypša, V.2
  • 24
    • 84907554141 scopus 로고    scopus 로고
    • New phylogenomic and comparative analyses provide corroborating evidence that Myxozoa is Cnidaria
    • Feng J-M, et al. (2014) New phylogenomic and comparative analyses provide corroborating evidence that Myxozoa is Cnidaria. Mol Phylogenet Evol 81(0):10-18.
    • (2014) Mol Phylogenet Evol , vol.81 , pp. 10-18
    • Feng, J.-M.1
  • 26
    • 84873813176 scopus 로고    scopus 로고
    • Agent of whirling disease meets orphan worm: Phylogenomic analyses firmly place Myxozoa in Cnidaria
    • Nesnidal MP, Helmkampf M, Bruchhaus I, El-Matbouli M, Hausdorf B (2013) Agent of whirling disease meets orphan worm: Phylogenomic analyses firmly place Myxozoa in Cnidaria. PLoS One 8(1):e54576.
    • (2013) PLoS One , vol.8 , Issue.1 , pp. e54576
    • Nesnidal, M.P.1    Helmkampf, M.2    Bruchhaus, I.3    El-Matbouli, M.4    Hausdorf, B.5
  • 28
    • 84907933466 scopus 로고    scopus 로고
    • Diversity and evolution of myxozoan minicollagens and nematogalectins
    • Shpirer E, et al. (2014) Diversity and evolution of myxozoan minicollagens and nematogalectins. BMC Evol Biol 14(1):205.
    • (2014) BMC Evol Biol , vol.14 , Issue.1 , pp. 205
    • Shpirer, E.1
  • 29
    • 39049154241 scopus 로고    scopus 로고
    • Minicollagen-15, a novel minicollagen isolated from Hydra, forms tubule structures in nematocysts
    • Adamczyk P, et al. (2008) Minicollagen-15, a novel minicollagen isolated from Hydra, forms tubule structures in nematocysts. J Mol Biol 376(4):1008-1020.
    • (2008) J Mol Biol , vol.376 , Issue.4 , pp. 1008-1020
    • Adamczyk, P.1
  • 30
    • 78649870022 scopus 로고    scopus 로고
    • Nematogalectin, a nematocyst protein with GlyXY and galectin domains, demonstrates nematocyte-specific alternative splicing in Hydra
    • Hwang JS, et al. (2010) Nematogalectin, a nematocyst protein with GlyXY and galectin domains, demonstrates nematocyte-specific alternative splicing in Hydra. Proc Natl Acad Sci USA 107(43):18539-18544.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.43 , pp. 18539-18544
    • Hwang, J.S.1
  • 31
    • 84855855130 scopus 로고    scopus 로고
    • Morphology, distribution, and evolution of apical structure of nematocysts in hexacorallia
    • Reft AJ, Daly M (2012) Morphology, distribution, and evolution of apical structure of nematocysts in hexacorallia. J Morphol 273(2):121-136.
    • (2012) J Morphol , vol.273 , Issue.2 , pp. 121-136
    • Reft, A.J.1    Daly, M.2
  • 33
    • 77954898638 scopus 로고    scopus 로고
    • History of myxozoan character evolution on the basis of rDNA and EF-2 data
    • Fiala I, Bartosová P (2010) History of myxozoan character evolution on the basis of rDNA and EF-2 data. BMC Evol Biol 10(1):228.
    • (2010) BMC Evol Biol , vol.10 , Issue.1 , pp. 228
    • Fiala, I.1    Bartosová, P.2
  • 34
    • 2442691520 scopus 로고    scopus 로고
    • A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
    • Lartillot N, Philippe H (2004) A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol Biol Evol 21(6):1095-1109.
    • (2004) Mol Biol Evol , vol.21 , Issue.6 , pp. 1095-1109
    • Lartillot, N.1    Philippe, H.2
  • 35
    • 84875056107 scopus 로고    scopus 로고
    • Deep metazoan phylogeny: When different genes tell different stories
    • Nosenko T, et al. (2013) Deep metazoan phylogeny: When different genes tell different stories. Mol Phylogenet Evol 67(1):223-233.
    • (2013) Mol Phylogenet Evol , vol.67 , Issue.1 , pp. 223-233
    • Nosenko, T.1
  • 37
    • 84938097712 scopus 로고    scopus 로고
    • The plant parasite Pratylenchus coffeae carries a minimal nematode genome
    • Burke M, et al. (2015) The plant parasite Pratylenchus coffeae carries a minimal nematode genome. Nematology 17(6):621-637.
    • (2015) Nematology , vol.17 , Issue.6 , pp. 621-637
    • Burke, M.1
  • 38
    • 34447300950 scopus 로고    scopus 로고
    • Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
    • Putnam NH, et al. (2007) Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317(5834):86-94.
    • (2007) Science , vol.317 , Issue.5834 , pp. 86-94
    • Putnam, N.H.1
  • 39
    • 77950080387 scopus 로고    scopus 로고
    • The dynamic genome of Hydra
    • Chapman JA, et al. (2010) The dynamic genome of Hydra. Nature 464(7288):592-596.
    • (2010) Nature , vol.464 , Issue.7288 , pp. 592-596
    • Chapman, J.A.1
  • 40
    • 84938490536 scopus 로고    scopus 로고
    • The genome of the myxosporean Thelohanellus kitauei shows adaptations to nutrient acquisition within its fish host
    • Yang Y, et al. (2014) The genome of the myxosporean Thelohanellus kitauei shows adaptations to nutrient acquisition within its fish host. Genome Biol Evol 6(12):3182-3198.
    • (2014) Genome Biol Evol , vol.6 , Issue.12 , pp. 3182-3198
    • Yang, Y.1
  • 41
    • 67650721347 scopus 로고    scopus 로고
    • CateGOrizer: A web-based program to batch analyze gene ontology classification categories
    • Zhi-Liang H, Jie B, Reecy JM (2008) CateGOrizer: A web-based program to batch analyze gene ontology classification categories. Online J Bioinform 9(2):108-112.
    • (2008) Online J Bioinform , vol.9 , Issue.2 , pp. 108-112
    • Zhi-Liang, H.1    Jie, B.2    Reecy, J.M.3
  • 42
    • 33644787447 scopus 로고    scopus 로고
    • OrthoMCL-DB: Querying a comprehensive multi-species collection of ortholog groups
    • Database issue
    • Chen F, Mackey AJ, Stoeckert CJ, Jr, Roos DS (2006) OrthoMCL-DB: Querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res 34 (Database issue, suppl 1):D363-D368.
    • (2006) Nucleic Acids Res , vol.34 , pp. D363-D368
    • Chen, F.1    Mackey, A.J.2    Stoeckert, C.J.3    Roos, D.S.4
  • 43
    • 33749402982 scopus 로고    scopus 로고
    • The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: Evidence from the starlet sea anemone, Nematostella vectensis
    • Ryan JF, et al. (2006) The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: Evidence from the starlet sea anemone, Nematostella vectensis. Genome Biol 7(7):R64.
    • (2006) Genome Biol , vol.7 , Issue.7 , pp. R64
    • Ryan, J.F.1
  • 44
    • 50449100342 scopus 로고    scopus 로고
    • The evolutionary origin of the Runx/CBFbeta transcription factors: Studies of the most basal metazoans
    • Sullivan JC, et al. (2008) The evolutionary origin of the Runx/CBFbeta transcription factors: Studies of the most basal metazoans. BMC Evol Biol 8(1):228.
    • (2008) BMC Evol Biol , vol.8 , Issue.1 , pp. 228
    • Sullivan, J.C.1
  • 46
    • 37849027508 scopus 로고    scopus 로고
    • The Hedgehog gene family of the cnidarian, Nematostella vectensis, and implications for understanding metazoan Hedgehog pathway evolution
    • Matus DQ, Magie CR, Pang K, Martindale MQ, Thomsen GH (2008) The Hedgehog gene family of the cnidarian, Nematostella vectensis, and implications for understanding metazoan Hedgehog pathway evolution. Dev Biol 313(2):501-518.
    • (2008) Dev Biol , vol.313 , Issue.2 , pp. 501-518
    • Matus, D.Q.1    Magie, C.R.2    Pang, K.3    Martindale, M.Q.4    Thomsen, G.H.5
  • 47
    • 84870376016 scopus 로고    scopus 로고
    • FoxO is a critical regulator of stem cell maintenance in immortal Hydra
    • Boehm A-M, et al. (2012) FoxO is a critical regulator of stem cell maintenance in immortal Hydra. Proc Natl Acad Sci USA 109(48):19697-19702.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.48 , pp. 19697-19702
    • Boehm, A.-M.1
  • 48
    • 84891924741 scopus 로고    scopus 로고
    • PIWI proteins and PIWI-interacting RNAs function in Hydra somatic stem cells
    • Juliano CE, et al. (2014) PIWI proteins and PIWI-interacting RNAs function in Hydra somatic stem cells. Proc Natl Acad Sci USA 111(1):337-342.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.1 , pp. 337-342
    • Juliano, C.E.1
  • 49
    • 70449578273 scopus 로고    scopus 로고
    • Evolutionary history of the HAP2/GCS1 gene and sexual reproduction in metazoans
    • Steele RE, Dana CE (2009) Evolutionary history of the HAP2/GCS1 gene and sexual reproduction in metazoans. PLoS One 4(11):e7680.
    • (2009) PLoS One , vol.4 , Issue.11 , pp. e7680
    • Steele, R.E.1    Dana, C.E.2
  • 50
    • 33846894978 scopus 로고    scopus 로고
    • The Notch signaling pathway in the cnidarian Hydra
    • Käsbauer T, et al. (2007) The Notch signaling pathway in the cnidarian Hydra. Dev Biol 303(1):376-390.
    • (2007) Dev Biol , vol.303 , Issue.1 , pp. 376-390
    • Käsbauer, T.1
  • 51
    • 0035713022 scopus 로고    scopus 로고
    • Identification and expression of HySmad1, a member of the R-Smad family of TGFbeta signal transducers, in the diploblastic metazoan Hydra
    • Hobmayer B, Rentzsch F, Holstein TW (2001) Identification and expression of HySmad1, a member of the R-Smad family of TGFbeta signal transducers, in the diploblastic metazoan Hydra. Dev Genes Evol 211(12):597-602.
    • (2001) Dev Genes Evol , vol.211 , Issue.12 , pp. 597-602
    • Hobmayer, B.1    Rentzsch, F.2    Holstein, T.W.3
  • 52
    • 79951478430 scopus 로고    scopus 로고
    • Acoelomorph flatworms are deuterostomes related to Xenoturbella
    • Philippe H, et al. (2011) Acoelomorph flatworms are deuterostomes related to Xenoturbella. Nature 470(7333):255-258.
    • (2011) Nature , vol.470 , Issue.7333 , pp. 255-258
    • Philippe, H.1
  • 53
    • 84881629698 scopus 로고    scopus 로고
    • PhyloBayes MPI: Phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment
    • Lartillot N, Rodrigue N, Stubbs D, Richer J (2013) PhyloBayes MPI: Phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment. Syst Biol 62(4):611-615.
    • (2013) Syst Biol , vol.62 , Issue.4 , pp. 611-615
    • Lartillot, N.1    Rodrigue, N.2    Stubbs, D.3    Richer, J.4
  • 54
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22(21):2688-2690.
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 56
    • 66449136667 scopus 로고    scopus 로고
    • ABySS: A parallel assembler for short read sequence data
    • Simpson JT, et al. (2009) ABySS: A parallel assembler for short read sequence data. Genome Res 19(6):1117-1123.
    • (2009) Genome Res , vol.19 , Issue.6 , pp. 1117-1123
    • Simpson, J.T.1
  • 57
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr MG, et al. (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29(7):644-652.
    • (2011) Nat Biotechnol , vol.29 , Issue.7 , pp. 644-652
    • Grabherr, M.G.1
  • 58
    • 34249848751 scopus 로고    scopus 로고
    • CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes
    • Parra G, Bradnam K, Korf I (2007) CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23(9):1061-1067.
    • (2007) Bioinformatics , vol.23 , Issue.9 , pp. 1061-1067
    • Parra, G.1    Bradnam, K.2    Korf, I.3
  • 59
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li H, Durbin R (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26(5):589-595.
    • (2010) Bioinformatics , vol.26 , Issue.5 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 60
    • 84870422798 scopus 로고    scopus 로고
    • Qualimap: Evaluating next-generation sequencing alignment data
    • García-Alcalde F, et al. (2012) Qualimap: Evaluating next-generation sequencing alignment data. Bioinformatics 28(20):2678-2679.
    • (2012) Bioinformatics , vol.28 , Issue.20 , pp. 2678-2679
    • García-Alcalde, F.1
  • 61
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology
    • Ashburner M, et al.; The Gene Ontology Consortium (2000) Gene ontology: Tool for the unification of biology. Nat Genet 25(1):25-29.
    • (2000) Nat Genet , vol.25 , Issue.1 , pp. 25-29
    • Ashburner, M.1
  • 62
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25(17):3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1
  • 63
    • 84891760956 scopus 로고    scopus 로고
    • Data, information, knowledge and principle: Back to metabolism in KEGG
    • Database issue
    • Kanehisa M, et al. (2014) Data, information, knowledge and principle: Back to metabolism in KEGG. Nucleic Acids Res 42 (Database issue, D1):D199-D205.
    • (2014) Nucleic Acids Res , vol.42 , Issue.D1 , pp. D199-D205
    • Kanehisa, M.1
  • 64
    • 28444475857 scopus 로고    scopus 로고
    • Kudoa iwatai (Myxosporea: Multivalvulida) in wild and cultured fish in the Red Sea: Redescription and molecular phylogeny
    • Diamant A, Ucko M, Paperna I, Colorni A, Lipshitz A (2005) Kudoa iwatai (Myxosporea: Multivalvulida) in wild and cultured fish in the Red Sea: Redescription and molecular phylogeny. J Parasitol 91(5):1175-1189.
    • (2005) J Parasitol , vol.91 , Issue.5 , pp. 1175-1189
    • Diamant, A.1    Ucko, M.2    Paperna, I.3    Colorni, A.4    Lipshitz, A.5
  • 65
    • 84949604210 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the devil firefish Pterois miles (Bennett, 1828) (Scorpaenidae)
    • August 8
    • Dray L, Neuhof M, Diamant A, Huchon D (August 8, 2014) The complete mitochondrial genome of the devil firefish Pterois miles (Bennett, 1828) (Scorpaenidae). Mitochondrial DNA, 10.3109/19401736.2014.945565.
    • (2014) Mitochondrial DNA
    • Dray, L.1    Neuhof, M.2    Diamant, A.3    Huchon, D.4
  • 66
    • 84949591423 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the gilthead seabream Sparus aurata L. (Sparidae)
    • Dray L, Neuhof M, Diamant A, Huchon D (2014) The complete mitochondrial genome of the gilthead seabream Sparus aurata L. (Sparidae). Mitochondrial DNA, 10.3109/19401736.2014.928861.
    • (2014) Mitochondrial DNA
    • Dray, L.1    Neuhof, M.2    Diamant, A.3    Huchon, D.4
  • 67
    • 79961123152 scopus 로고    scopus 로고
    • RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome
    • Li B, Dewey CN (2011) RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12(1):323.
    • (2011) BMC Bioinformatics , vol.12 , Issue.1 , pp. 323
    • Li, B.1    Dewey, C.N.2
  • 68
    • 84880266648 scopus 로고    scopus 로고
    • De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
    • Haas BJ, et al. (2013) De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc 8(8):1494-1512.
    • (2013) Nat Protoc , vol.8 , Issue.8 , pp. 1494-1512
    • Haas, B.J.1
  • 69
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A (1999) CAP3: A DNA sequence assembly program. Genome Res 9(9):868-877.
    • (1999) Genome Res , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 70
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead B, Salzberg SL (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9(4):357-359.
    • (2012) Nat Methods , vol.9 , Issue.4 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 71
    • 84055178433 scopus 로고    scopus 로고
    • MAKER2: An annotation pipeline and genome-database management tool for second-generation genome projects
    • Holt C, Yandell M (2011) MAKER2: An annotation pipeline and genome-database management tool for second-generation genome projects. BMC Bioinformatics 12:491.
    • (2011) BMC Bioinformatics , vol.12 , pp. 491
    • Holt, C.1    Yandell, M.2
  • 72
    • 23144455729 scopus 로고    scopus 로고
    • OrfPredictor: Predicting protein-coding regions in EST-derived sequences
    • Web Server issue
    • Min XJ, Butler G, Storms R, Tsang A (2005) OrfPredictor: Predicting protein-coding regions in EST-derived sequences. Nucleic Acids Res 33 (Web Server issue, suppl 2):W677-W680.
    • (2005) Nucleic Acids Res , vol.33 , pp. W677-W680
    • Min, X.J.1    Butler, G.2    Storms, R.3    Tsang, A.4


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