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Volumn 12, Issue 1, 2015, Pages

A parallel genome-wide RNAi screening strategy to identify host proteins important for entry of Marburg virus and H5N1 influenza virus Emerging viruses

Author keywords

[No Author keywords available]

Indexed keywords

HOST FACTOR; PROTEIN DERIVATIVE;

EID: 84948576437     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/s12985-015-0420-3     Document Type: Article
Times cited : (12)

References (34)
  • 1
    • 32944478317 scopus 로고    scopus 로고
    • Emerging and re-emerging infectious diseases: Influenza as a prototype of the host-pathogen balancing act
    • 1:CAS:528:DC%2BD28Xit1Klt7Y%3D 16497575
    • Fauci AS. Emerging and re-emerging infectious diseases: influenza as a prototype of the host-pathogen balancing act. Cell. 2006;124:665-70.
    • (2006) Cell , vol.124 , pp. 665-670
    • Fauci, A.S.1
  • 2
    • 77953626646 scopus 로고    scopus 로고
    • Genomic screening with RNAi: Results and challenges
    • 3564595 1:CAS:528:DC%2BC3cXpslShsb0%3D 20367032
    • Mohr S, Bakal C, Perrimon N. Genomic screening with RNAi: results and challenges. Annu Rev Biochem. 2010;79:37-64. doi: 10.1146/annurev-biochem-060408-092949.
    • (2010) Annu Rev Biochem , vol.79 , pp. 37-64
    • Mohr, S.1    Bakal, C.2    Perrimon, N.3
  • 3
    • 55249088255 scopus 로고    scopus 로고
    • Genome-scale RNAi screen for host factors required for HIV replication
    • 1:CAS:528:DC%2BD1cXhsVWku7fJ 18976975
    • Zhou H, Xu M, Huang Q, Gates AT, Zhang XD, Castle JC, et al. Genome-scale RNAi screen for host factors required for HIV replication. Cell Host Microbe. 2008;4(5):495-504. doi: 10.1016/j.chom.
    • (2008) Cell Host Microbe , vol.4 , Issue.5 , pp. 495-504
    • Zhou, H.1    Xu, M.2    Huang, Q.3    Gates, A.T.4    Zhang, X.D.5    Castle, J.C.6
  • 4
    • 39349097864 scopus 로고    scopus 로고
    • Identification of host proteins required for HIV infection through a functional genomic screen
    • 1:CAS:528:DC%2BD1cXhslOmtL4%3D 18187620
    • Brass AL, Dykxhoorn DM, Benita Y, Yan N, Engelman A, Xavier RJ, et al. Identification of host proteins required for HIV infection through a functional genomic screen. Science. 2008;319(5865):921-6. doi: 10.1126/science.1152725.
    • (2008) Science , vol.319 , Issue.5865 , pp. 921-926
    • Brass, A.L.1    Dykxhoorn, D.M.2    Benita, Y.3    Yan, N.4    Engelman, A.5    Xavier, R.J.6
  • 5
    • 52949130695 scopus 로고    scopus 로고
    • Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication
    • 2628946 1:CAS:528:DC%2BD1cXht1Gkt7nO 18854154
    • Konig R, Zhou Y, Elleder D, Diamond TL, Bonamy GM, Irelan JT, et al. Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication. Cell. 2008;135(1):49-60. doi: 10.1016/j.cell.2008.07.032.
    • (2008) Cell , vol.135 , Issue.1 , pp. 49-60
    • Konig, R.1    Zhou, Y.2    Elleder, D.3    Diamond, T.L.4    Bonamy, G.M.5    Irelan, J.T.6
  • 6
    • 49649127852 scopus 로고    scopus 로고
    • Drosophila RNAi screen identifies host genes important for influenza virus replication
    • 2574945 1:CAS:528:DC%2BD1cXpvVais7s%3D 18615016
    • Hao L, Sakurai A, Watanabe T, Sorensen E, Nidom CA, Newton MA, et al. Drosophila RNAi screen identifies host genes important for influenza virus replication. Nature. 2008;454(7206):890-3.
    • (2008) Nature , vol.454 , Issue.7206 , pp. 890-893
    • Hao, L.1    Sakurai, A.2    Watanabe, T.3    Sorensen, E.4    Nidom, C.A.5    Newton, M.A.6
  • 7
    • 76749090540 scopus 로고    scopus 로고
    • Genome-wide RNAi screen identifies human host factors crucial for influenza virus replication
    • 1:CAS:528:DC%2BC3cXntVCltQ%3D%3D 20081832
    • Karlas A, Machuy N, Shin Y, Pleissner KP, Artarini A, Heuer D, et al. Genome-wide RNAi screen identifies human host factors crucial for influenza virus replication. Nature. 2010;463(7282):818-22. doi: 10.1038/nature08760.
    • (2010) Nature , vol.463 , Issue.7282 , pp. 818-822
    • Karlas, A.1    Machuy, N.2    Shin, Y.3    Pleissner, K.P.4    Artarini, A.5    Heuer, D.6
  • 8
    • 77956528167 scopus 로고    scopus 로고
    • Cellular networks involved in the influenza virus life cycle
    • 3167038 1:CAS:528:DC%2BC3cXos1KqsrY%3D 20542247
    • Watanabe T, Watanabe S, Kawaoka Y. Cellular networks involved in the influenza virus life cycle. Cell Host Microbe. 2010;7:427-39. doi: 10.1016/j.chom.2010.05.008.
    • (2010) Cell Host Microbe , vol.7 , pp. 427-439
    • Watanabe, T.1    Watanabe, S.2    Kawaoka, Y.3
  • 9
    • 76749108989 scopus 로고    scopus 로고
    • Human host factors required for influenza virus replication
    • 2862546 20027183
    • Konig R et al. Human host factors required for influenza virus replication. Nature. 2010;463:813-7. doi: 10.1038/nature08699.
    • (2010) Nature , vol.463 , pp. 813-817
    • Konig, R.1
  • 10
    • 80053241157 scopus 로고    scopus 로고
    • Virus-host interactomes and global models of virus-infected cells
    • 1:CAS:528:DC%2BC3MXht1GrurrJ 21855347
    • Friedel CC, Haas J. Virus-host interactomes and global models of virus-infected cells. Trends Microbiol. 2011;19:501-8. doi: 10.1016/j.tim.2011.07.003.
    • (2011) Trends Microbiol , vol.19 , pp. 501-508
    • Friedel, C.C.1    Haas, J.2
  • 11
    • 67650763700 scopus 로고    scopus 로고
    • Expression of Ebolavirus glycoprotein on the target cells enhances viral entry
    • 2699336 19505320
    • Manicassamy B, Rong L. Expression of Ebolavirus glycoprotein on the target cells enhances viral entry. Virol J. 2009;6:75.
    • (2009) Virol J , vol.6 , pp. 75
    • Manicassamy, B.1    Rong, L.2
  • 12
    • 16244391124 scopus 로고    scopus 로고
    • Comprehensive Analysis of Ebola Virus GP1 in Viral Entry
    • 1069533 1:CAS:528:DC%2BD2MXjt1Ghsbw%3D 15795265
    • Manicassamy B, Wang J, Jiang H, Rong L. Comprehensive Analysis of Ebola Virus GP1 in Viral Entry. J Virol. 2005;79:4793-805.
    • (2005) J Virol , vol.79 , pp. 4793-4805
    • Manicassamy, B.1    Wang, J.2    Jiang, H.3    Rong, L.4
  • 13
    • 65549148655 scopus 로고    scopus 로고
    • Analysis of hemagglutinin-mediated entry tropism of H5N1 avian influenza
    • 2679739 19341465
    • Guo Y, Rumschlag-Booms E, Wang J, Xiao H, Yu J, Wang J, et al. Analysis of hemagglutinin-mediated entry tropism of H5N1 avian influenza. Virol J. 2009;6(1):39.
    • (2009) Virol J , vol.6 , Issue.1 , pp. 39
    • Guo, Y.1    Rumschlag-Booms, E.2    Wang, J.3    Xiao, H.4    Yu, J.5    Wang, J.6
  • 14
    • 79952590815 scopus 로고    scopus 로고
    • Identification of a small-molecule entry inhibitor for filoviruses
    • 3067866 1:CAS:528:DC%2BC3MXhtVWltL3M 21270170
    • Basu A, Li B, Mills DM, Panchal RG, Cardinale SC, Butler MM, et al. Identification of a small-molecule entry inhibitor for filoviruses. J Virol. 2011;85(7):3106-19. doi: 10.1128/JVI.01456-10.
    • (2011) J Virol , vol.85 , Issue.7 , pp. 3106-3119
    • Basu, A.1    Li, B.2    Mills, D.M.3    Panchal, R.G.4    Cardinale, S.C.5    Butler, M.M.6
  • 15
    • 84892471469 scopus 로고    scopus 로고
    • New small molecule entry inhibitors targeting hemagglutinin-mediated influenza a virus fusion
    • 3911584 24198411
    • Basu A, Antanasijevic A, Wang M, Li B, Mills DM, Ames JA, et al. New small molecule entry inhibitors targeting hemagglutinin-mediated influenza a virus fusion. J Virol. 2014;88(3):1447-60. doi: 10.1128/JVI.01225-13.
    • (2014) J Virol , vol.88 , Issue.3 , pp. 1447-1460
    • Basu, A.1    Antanasijevic, A.2    Wang, M.3    Li, B.4    Mills, D.M.5    Ames, J.A.6
  • 16
    • 0034001723 scopus 로고    scopus 로고
    • Distinct mechanisms of entry by envelope glycoproteins of Marburg and Ebola (Zaire) viruses
    • 112022 1:CAS:528:DC%2BD3cXivFynsLc%3D 10775638
    • Chan SY, Speck RF, Ma MC, Goldsmith MA. Distinct mechanisms of entry by envelope glycoproteins of Marburg and Ebola (Zaire) viruses. J Virol. 2000;74:4933-7.
    • (2000) J Virol , vol.74 , pp. 4933-4937
    • Chan, S.Y.1    Speck, R.F.2    Ma, M.C.3    Goldsmith, M.A.4
  • 17
    • 77649222033 scopus 로고    scopus 로고
    • Zaire Ebola virus entry into human dendritic cells is insensitive to cathepsin L inhibition
    • 2996272 1:CAS:528:DC%2BC3cXhtFCrsr8%3D 19775255
    • Martinez O, Johnson J, Manicassamy B, Rong L, Olinger GG, Hensley LE, et al. Zaire Ebola virus entry into human dendritic cells is insensitive to cathepsin L inhibition. Cell Microbiol. 2010;12(2):148-57. doi: 10.1111/j.1462-5822.2009.01385.x.
    • (2010) Cell Microbiol , vol.12 , Issue.2 , pp. 148-157
    • Martinez, O.1    Johnson, J.2    Manicassamy, B.3    Rong, L.4    Olinger, G.G.5    Hensley, L.E.6
  • 18
    • 84890821001 scopus 로고    scopus 로고
    • A comparative high-throughput screening protocol to identify entry inhibitors of enveloped viruses
    • 1:CAS:528:DC%2BC2cXhslWgs7zO 23821643
    • Wang J, Cheng H, Ratia K, Varhegyi E, Hendrickson WG, Li J, et al. A comparative high-throughput screening protocol to identify entry inhibitors of enveloped viruses. J Biomol Screen. 2014;19(1):100-7. doi: 10.1177/1087057113494405.
    • (2014) J Biomol Screen , vol.19 , Issue.1 , pp. 100-107
    • Wang, J.1    Cheng, H.2    Ratia, K.3    Varhegyi, E.4    Hendrickson, W.G.5    Li, J.6
  • 19
    • 70449525126 scopus 로고    scopus 로고
    • Identification of a new region of SARS-CoV S protein critical for viral entry
    • 2794126 1:CAS:528:DC%2BD1MXhsVKnsb3K 19853613
    • Guo Y, Tisoncik J, McReynolds S, Farzan M, Prabhakar BS, Gallagher T. Identification of a new region of SARS-CoV S protein critical for viral entry. J Mol Biol. 2009;394(4):600.
    • (2009) J Mol Biol , vol.394 , Issue.4 , pp. 600
    • Guo, Y.1    Tisoncik, J.2    McReynolds, S.3    Farzan, M.4    Prabhakar, B.S.5    Gallagher, T.6
  • 20
    • 33846086605 scopus 로고    scopus 로고
    • Characterization of Marburg virus glycoprotein in viral entry
    • 1:CAS:528:DC%2BD2sXmtVWntA%3D%3D 16989883
    • Manicassamy B, Wang J, Rumschlag E, Tymen S, Volchkova V, Volchkov V, et al. Characterization of Marburg virus glycoprotein in viral entry. Virology. 2007;358(1):79-88.
    • (2007) Virology , vol.358 , Issue.1 , pp. 79-88
    • Manicassamy, B.1    Wang, J.2    Rumschlag, E.3    Tymen, S.4    Volchkova, V.5    Volchkov, V.6
  • 21
    • 0033003760 scopus 로고    scopus 로고
    • A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays
    • 10838414
    • Zhang JH, Chung TD, Oldenburg KR. A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays. J Biomol Screen. 1999;4:67-73.
    • (1999) J Biomol Screen , vol.4 , pp. 67-73
    • Zhang, J.H.1    Chung, T.D.2    Oldenburg, K.R.3
  • 22
    • 19144365133 scopus 로고    scopus 로고
    • Endosomal proteolysis of the Ebola virus glycoprotein is necessary for infection
    • 1:CAS:528:DC%2BD2MXltFemsLc%3D 15831716
    • Chandran K, Sullivan NJ, Felbor U, Whelan SP, Cunningham JM. Endosomal proteolysis of the Ebola virus glycoprotein is necessary for infection. Science. 2005;308:1643-5.
    • (2005) Science , vol.308 , pp. 1643-1645
    • Chandran, K.1    Sullivan, N.J.2    Felbor, U.3    Whelan, S.P.4    Cunningham, J.M.5
  • 23
    • 84928555554 scopus 로고    scopus 로고
    • Role of EXT1 and Glycosaminoglycans in the Early Stage of Filovirus Entry
    • 4442511 25741008
    • O'Hearn A, Wang M, Cheng H, Lear-Rooney CM, Koning K, Rumschlag-Booms E, et al. Role of EXT1 and Glycosaminoglycans in the Early Stage of Filovirus Entry. J Virol. 2015;89(10):5441-9. doi: 10.1128/JVI.03689-14.
    • (2015) J Virol , vol.89 , Issue.10 , pp. 5441-5449
    • O'Hearn, A.1    Wang, M.2    Cheng, H.3    Lear-Rooney, C.M.4    Koning, K.5    Rumschlag-Booms, E.6
  • 25
    • 80052868218 scopus 로고    scopus 로고
    • Small molecule inhibitors reveal Niemann-Pick C1 is essential for Ebola virus infection
    • Cote M, Misasi J, Ren T, Bruchez A, Lee K, Filone CM et al. Small molecule inhibitors reveal Niemann-Pick C1 is essential for Ebola virus infection. Nature. 2011. doi: 10.1038/nature10380.
    • (2011) Nature
    • Cote, M.1    Misasi, J.2    Ren, T.3    Bruchez, A.4    Lee, K.5    Filone, C.M.6
  • 26
    • 0035854387 scopus 로고    scopus 로고
    • Folate receptor-alpha is a cofactor for cellular entry by Marburg and Ebola viruses
    • 1:CAS:528:DC%2BD3MXlsVCqt74%3D 11461707
    • Chan SY, Empig CJ, Welte FJ, Speck RF, Schmaljohn A, Kreisberg JF, et al. Folate receptor-alpha is a cofactor for cellular entry by Marburg and Ebola viruses. Cell. 2001;106(1):117-26.
    • (2001) Cell , vol.106 , Issue.1 , pp. 117-126
    • Chan, S.Y.1    Empig, C.J.2    Welte, F.J.3    Speck, R.F.4    Schmaljohn, A.5    Kreisberg, J.F.6
  • 27
    • 79957780148 scopus 로고    scopus 로고
    • T-cell immunoglobulin and mucin domain 1 (TIM-1) is a receptor for Zaire Ebolavirus and Lake Victoria Marburgvirus
    • 1:CAS:528:DC%2BC3MXmsF2jtLs%3D 21536871
    • Kondratowicz AS, Lennemann NJ, Sinn PL, Davey RA, Hunt CL, Moller-Tank S, et al. T-cell immunoglobulin and mucin domain 1 (TIM-1) is a receptor for Zaire Ebolavirus and Lake Victoria Marburgvirus. Proc Natl Acad Sci U S A. 2011;108(20):8426-31. doi: 10.1073/pnas.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.20 , pp. 8426-8431
    • Kondratowicz, A.S.1    Lennemann, N.J.2    Sinn, P.L.3    Davey, R.A.4    Hunt, C.L.5    Moller-Tank, S.6
  • 28
    • 0344736794 scopus 로고    scopus 로고
    • Folate receptor alpha and caveolae are not required for Ebola virus glycoprotein-mediated viral infection
    • 296046 1:CAS:528:DC%2BD3sXpslSmsb4%3D 14645601
    • Simmons G, Rennekamp AJ, Chai N, Vandenberghe LH, Riley JL, Bates P. Folate receptor alpha and caveolae are not required for Ebola virus glycoprotein-mediated viral infection. J Virol. 2003;77(24):13433-8.
    • (2003) J Virol , vol.77 , Issue.24 , pp. 13433-13438
    • Simmons, G.1    Rennekamp, A.J.2    Chai, N.3    Vandenberghe, L.H.4    Riley, J.L.5    Bates, P.6
  • 29
    • 84860187343 scopus 로고    scopus 로고
    • Single-cell analysis of population context advances RNAi screening at multiple levels
    • 3361004 22531119
    • Snijder B, Sacher R, Ramo P, Liberali P, Mench K, Wolfrum N, et al. Single-cell analysis of population context advances RNAi screening at multiple levels. Mol Syst Biol. 2012;8:579. doi: 10.1038/msb.2012.9.
    • (2012) Mol Syst Biol , vol.8 , pp. 579
    • Snijder, B.1    Sacher, R.2    Ramo, P.3    Liberali, P.4    Mench, K.5    Wolfrum, N.6
  • 30
    • 44849125803 scopus 로고    scopus 로고
    • Integrating experimental and analytic approaches to improve data quality in genome-wide RNAi screens
    • 1:CAS:528:DC%2BD1cXotlCms7c%3D 18480473
    • Zhang XD, Espeseth AS, Johnson EN, Chin J, Gates A, Mitnaul LJ, et al. Integrating experimental and analytic approaches to improve data quality in genome-wide RNAi screens. J Biomol Screen. 2008;13(5):378-89. doi: 10.1177/1087057108317145.
    • (2008) J Biomol Screen , vol.13 , Issue.5 , pp. 378-389
    • Zhang, X.D.1    Espeseth, A.S.2    Johnson, E.N.3    Chin, J.4    Gates, A.5    Mitnaul, L.J.6
  • 31
    • 39049151240 scopus 로고    scopus 로고
    • Quantitative assessment of hit detection and confirmation in single and duplicate high-throughput screenings
    • 1:CAS:528:DC%2BD1cXjtFCitbc%3D 18216390
    • Wu Z, Liu D, Sui Y. Quantitative assessment of hit detection and confirmation in single and duplicate high-throughput screenings. J Biomol Screen. 2008;13:159-67. doi: 10.1177/1087057107312628.
    • (2008) J Biomol Screen , vol.13 , pp. 159-167
    • Wu, Z.1    Liu, D.2    Sui, Y.3
  • 32
    • 0028853961 scopus 로고
    • Human immunodeficiency virus type 1 viral protein R (Vpr) arrests cells in the G2 phase of the cell cycle by inhibiting p34cdc2 activity
    • 189580 1:CAS:528:DyaK2MXoslWkt74%3D 7474080
    • He J, Choe S, Walker R, Di Marzio P, Morgan DO, Landau NR. Human immunodeficiency virus type 1 viral protein R (Vpr) arrests cells in the G2 phase of the cell cycle by inhibiting p34cdc2 activity. J Virol. 1995;69(11):6705-11.
    • (1995) J Virol , vol.69 , Issue.11 , pp. 6705-6711
    • He, J.1    Choe, S.2    Walker, R.3    Di Marzio, P.4    Morgan, D.O.5    Landau, N.R.6
  • 33
    • 0028842207 scopus 로고
    • Vpr is required for efficient replication of human immunodeficiency virus type-1 in mononuclear phagocytes
    • 1:CAS:528:DyaK2MXjs1WkurY%3D 7531918
    • Connor RI, Chen BK, Choe S, Landau NR. Vpr is required for efficient replication of human immunodeficiency virus type-1 in mononuclear phagocytes. Virology. 1995;206:935-44.
    • (1995) Virology , vol.206 , pp. 935-944
    • Connor, R.I.1    Chen, B.K.2    Choe, S.3    Landau, N.R.4
  • 34
    • 68349112682 scopus 로고    scopus 로고
    • Statistical methods for analysis of high-throughput RNA interference screens
    • 2789971 1:CAS:528:DC%2BD1MXpt1Wgsro%3D 19644458
    • Birmingham A, Selfors LM, Forster T, Wrobel D, Kennedy CJ, Shanks E, et al. Statistical methods for analysis of high-throughput RNA interference screens. Nat Methods. 2009;6(8):569-75. doi: 10.1038/nmeth.1351.
    • (2009) Nat Methods , vol.6 , Issue.8 , pp. 569-575
    • Birmingham, A.1    Selfors, L.M.2    Forster, T.3    Wrobel, D.4    Kennedy, C.J.5    Shanks, E.6


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