Signal amplification technology based on entropy-driven molecular switch for ultrasensitive electrochemical determination of DNA and Salmonella typhimurium

Sensors and Actuators, B: Chemical

Volumn 225, Issue , 2016, Pages 420-427

  Zong, Yingxia ^a   Liu, Fang ^a,b   Zhang, Yue ^a   Zhan, Tianrong ^a   He, Yunhua ^c   Hun, Xu ^a  

^a QINGDAO UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^b Shandong University   (China)

^c CHANG'AN UNIVERSITY   (China)

Author keywords

DNA; Electrochemical sensor; Entropy driven; Salmonella typhimurium; Signal amplification

Indexed keywords

CHEMICAL DETECTION; COST EFFECTIVENESS; DNA; ELECTROCHEMICAL SENSORS; ENTROPY; GOLD; MOLECULES; NANOPARTICLES; PROBES; SALMONELLA; SIGNAL DETECTION; SIGNAL PROCESSING;

ELECTROCHEMICAL DETERMINATION; ELECTROCHEMICAL RESPONSE; HYBRIDIZATION REACTIONS; LOW DETECTION LIMIT; NANOPARTICLE PROBES; SALMONELLA TYPHIMURIUM; SIGNAL AMPLIFICATIONS; ULTRASENSITIVE DETECTION;

MOLECULAR DYNAMICS;

EID: 84948389058     PISSN: 09254005     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.snb.2015.11.086     Document Type: Article

References (41)

1. C. Shi, C. Zhao, Q. Guo, and C. Ma Entropy-driven molecular switch and signal amplification for homogeneous SNPs detection Chem. Commun. 47 2011 2895 2897
2. F. He, F. Feng, X. Duan, S. Wang, Y. Li, and D. Zhu Selective and homogeneous fluorescent DNA detection by target-induced strand displacement using cationic conjugated polyelectrolytes Anal. Chem. 80 2008 2239 2243
3. X. Hun, F. Liu, Z. Mei, L. Ma, Z. Wang, and X. Luo Signal amplified strategy based on target-induced strand release coupling cleavage of nicking endonuclease for the ultrasensitive detection of ochratoxin A Biosens. Bioelectron. 39 2013 145 151
4. S. Zhang, J. Xia, and X. Li Electrochemical biosensor for detection of adenosine based on structure-switching aptamer and amplification with reporter probe DNA modified Au nanoparticles Anal. Chem. 80 2008 8382 8388
5. X. Fang, H. Zhang, F. Zhang, F. Jing, H. Mao, Q. Jin, and J. Zhao Real-time monitoring of strand-displacement DNA amplification by a contactless electrochemical microsystem using interdigitated electrodes Lab Chip 12 2012 3190 3196
6. T.H. Kjallman, H. Peng, C. Soeller, and J. Travas-Sejdic A CdTe nanoparticle-modified hairpin probe for direct and sensitive electrochemical detection of DNA Analyst 135 2010 488 494
7. H.J. Chung, C.M. Castro, H. Im, H. Lee, and R. Weissleder A magneto-DNA nanoparticle system for rapid detection and phenotyping of bacteria Nat. Nanotechnol. 8 2013 369 375
8. S. Bi, Y. Yan, X. Yang, and S. Zhang Gold nanolabels for new enhanced chemiluminescence immunoassay of alpha-fetoprotein based on magnetic beads Chemistry 15 2009 4704 4709
9. F. Patolsky, A. Lichtenstein, and I. Willner Detection of single-base DNA mutations by enzyme-amplified electronic transduction Nat. Biotechnol. 19 2001 253 257
10. Y. Lu, and J. Liu Functional DNA nanotechnology: emerging applications of DNAzymes and aptamers Curr. Opin. Biotechnol. 17 2006 580 588
11. 2+ ions or l-histidine Chem. Commun. 2008 1569 1571
12. D. Li, Y. Yan, A. Wieckowska, and I. Willner Amplified electrochemical detection of DNA through the aggregation of Au nanoparticles on electrodes and the incorporation of methylene blue into the DNA-crosslinked structure Chem. Commun. 2007 3544 3546
13. Y.F. Huang, H. Liu, X. Xiong, Y. Chen, and W. Tan Nanoparticle-mediated IgE-receptor aggregation and signaling in RBL mast cells J. Am. Chem. Soc. 131 2009 17328 17334
14. M. Strerath, and A. Marx Genotyping - from genomic DNA to genotype in a single tube Angew. Chem. Int. Ed. Engl. 44 2005 7842 7849
15. R.T. Ranasinghe, and T. Brown Fluorescence based strategies for genetic analysis Chem. Commun. 2005 5487 5502
16. M.R. Hartman, D. Yang, T.N. Tran, K. Lee, J.S. Kahn, P. Kiatwuthinon, K.G. Yancey, O. Trotsenko, S. Minko, and D. Luo Thermostable branched DNA nanostructures as modular primers for polymerase chain reaction Angew. Chem. Int. Ed. Engl. 52 2013 8699 8702
17. Y. Liu, H. Yao, and J. Zhu Water-enabled visual detection of DNA J. Am. Chem. Soc. 135 2013 16268 16271
18. Y. Wen, Y. Xu, X. Mao, Y. Wei, H. Song, N. Chen, Q. Huang, C. Fan, and D. Li DNAzyme-based rolling-circle amplification DNA machine for ultrasensitive analysis of microRNA in Drosophila larva Anal. Chem. 84 2012 7664 7669
19. C. Russell, K. Welch, J. Jarvius, Y. Cai, R. Brucas, F. Nikolajeff, P. Svedlindh, and M. Nilsson Gold nanowire based electrical DNA detection using rolling circle amplification ACS Nano 8 2014 1147 1153
20. W. Zhou, X. Gong, Y. Xiang, R. Yuan, and Y. Chai Target-triggered quadratic amplification for label-free and sensitive visual detection of cytokines based on hairpin aptamer DNAzyme probes Anal. Chem. 86 2014 953 958
21. B.C. Yin, Y.Q. Liu, and B.C. Ye Sensitive detection of microRNA in complex biological samples via enzymatic signal amplification using DNA polymerase coupled with nicking endonuclease Anal. Chem. 85 2013 11487 11493
22. B. Shlyahovsky, D. Li, Y. Weizmann, R. Nowarski, M. Kotler, and I. Willner Spotlighting of cocaine by an autonomous aptamer-based machine J. Am. Chem. Soc. 129 2007 3814 3815
23. A. Joneja, and X. Huang Linear nicking endonuclease-mediated strand-displacement DNA amplification Anal. Biochem. 414 2011 58 69
24. D.Y. Zhang, A.J. Turberfield, B. Yurke, and E. Winfree Engineering entropy-driven reactions and networks catalyzed by DNA Science 318 2007 1121 1125
25. S. Bi, J. Zhang, S. Hao, C. Ding, and S. Zhang Exponential amplification for chemiluminescence resonance energy transfer detection of microRNA in real samples based on a cross-catalyst strand-displacement network Anal. Chem. 83 2011 3696 3702
26. K.C. Grabar, P.C. Smith, M.D. Musick, J.A. Davis, D.G. Walter, M.A. Jackson, A.P. Guthrie, and M.J. Natan Kinetic control of interparticle spacing in Au colloid-based surfaces: rational nanometer-scale architecture J. Am. Chem. Soc. 118 1996 1148 1153
27. J.D. Newman, and G.J. Blanchard Formation of gold nanoparticles using amine reducing agents Langmuir 22 2006 5882 5887
28. B. Su, J. Tang, H. Chen, J. Huang, G. Chen, and D. Tang Thionine/nanogold multilayer film for electrochemical immunoassay of alpha-fetoprotein in human serum using biofunctional double-codified gold nanoparticles Anal. Methods 2 2010 1702 1709
29. S. Liu, P. Wu, W. Li, H. Zhang, and C. Cai Ultrasensitive and selective electrochemical identification of hepatitis C virus genotype 1b based on specific endonuclease combined with gold nanoparticles signal amplification Anal. Chem. 83 2011 4752 4758
30. Y. Zhang, Z. Tang, J. Wang, H. Wu, A. Maham, and Y. Lin Hairpin DNA switch for ultrasensitive spectrophotometric detection of DNA hybridization based on gold nanoparticles and enzyme signal amplification Anal. Chem. 82 2010 6440 6446
31. F. Li, H. Zhang, Z. Wang, X. Li, X.F. Li, and X.C. Le Dynamic DNA assemblies mediated by binding-induced DNA strand displacement J. Am. Chem. Soc. 135 2013 2443 2446
32. N. Duan, S. Wu, X. Chen, Y. Huang, Y. Xia, X. Ma, and Z. Wang Selection and characterization of aptamers against Salmonella typhimurium using whole-bacterium Systemic Evolution of Ligands by Exponential Enrichment (SELEX) J. Agric. Food Chem. 61 2013 3229 3234
33. S. Shukla, H. Leem, and M. Kim Development of a liposome-based immunochromatographic strip assay for the detection of Salmonella Anal. Bioanal. Chem. 401 2011 2581 2590
34. C. Techathuvanan, F.A. Draughon, and D.H. D'Souza Loop-mediated isothermal amplification (LAMP) for the rapid and sensitive detection of Salmonella typhimurium from pork J. Food Sci. 75 2010 M165 M172
35. C. Techathuvanan, and D.H. D'Souza Reverse-transcriptase loop-mediated isothermal amplification as a rapid screening/monitoring tool for Salmonella enterica detection in liquid whole eggs J. Food Sci. 77 2012 M200 M205
36. P.-D. Nguyen, T.B. Tran, D.T.X. Nguyen, and J. Min Magnetic silica nanotube-assisted impedimetric immunosensor for the separation and label-free detection of Salmonella typhimurium Sens. Actuators B: Chem. 197 2014 314 320
37. J.R. Son, G. Kim, A. Kothapalli, M.T. Morgan, and D. Ess Detection of Salmonella enteritidis using a miniature optical surface plasmon resonance biosensor J. Phys.: Conf. Ser. 61 2007 1086
38. G. Kim, S.B. Park, J.-H. Moon, and S. Lee Detection of pathogenic Salmonella with nanobiosensors Anal. Methods 5 2013 5717 5723
39. X.L. Su, and Y. Li A QCM immunosensor for Salmonella detection with simultaneous measurements of resonant frequency and motional resistance Biosens. Bioelectron. 21 2005 840 848
40. J. Dong, H. Zhao, M. Xu, Q. Ma, and S. Ai A label-free electrochemical impedance immunosensor based on AuNPs/PAMAM-MWCNT-Chi nanocomposite modified glassy carbon electrode for detection of Salmonella typhimurium in milk Food Chem. 141 2013 1980 1986
41. J. Yuan, Z. Tao, Y. Yu, X. Ma, Y. Xia, L. Wang, and Z. Wang A visual detection method for Salmonella typhimurium based on aptamer recognition and nanogold labeling Food Control 37 2014 188 192