The full-length DNA sequence of Epstein Barr virus from a human gastric carcinoma cell line, SNU-719

Virus Genes

Volumn 51, Issue 3, 2015, Pages 329-337

  Song, Kyung A ^a,b   Yang, San Duk ^c   Hwang, Jinha ^c   Kim, Jong Il ^c,d   Kang, Myung Soo ^a,b  

^a Sungkyunkwan University School of Medicine   (South Korea)

^b Samsung Medical Center   (South Korea)

^c Seoul National University   (South Korea)

^d Seoul National University College of Medicine   (South Korea)

Author keywords

EBVaGC; Epstein Barr virus; Gastric carcinoma; Genome; Next generation sequencing; RNAseq

Indexed keywords

VIRUS DNA; ARL2BP PROTEIN, HUMAN; BNLF21 PROTEIN, HUMAN HERPESVIRUS 4; CARRIER PROTEIN; EBV-ASSOCIATED MEMBRANE ANTIGEN, EPSTEIN-BARR VIRUS; EPSTEIN BARR VIRUS ANTIGEN; LF3 PROTEIN, EPSTEIN-BARR VIRUS; MATRIX PROTEIN; TRANSCRIPTOME; VIRAL PROTEIN;

ARTICLE; COMPARATIVE STUDY; CONTROLLED STUDY; DNA INTEGRATION; DNA SEQUENCE; EPSTEIN BARR VIRUS; GASTRIC CANCER CELL LINE; GENE DELETION; GENE EXPRESSION; GENE SEQUENCE; GENETIC CODE; GENETIC VARIABILITY; GENOME ANALYSIS; HUMAN; HUMAN CELL; NEXT GENERATION SEQUENCING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; VIRUS GENOME; BIOSYNTHESIS; CHROMOSOMAL MAPPING; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHYLOGENY; SEQUENCE ANALYSIS; SILENT MUTATION; STOMACH TUMOR; TUMOR CELL LINE; VIROLOGY;

BASE SEQUENCE; CARRIER PROTEINS; CELL LINE, TUMOR; CHROMOSOME MAPPING; EPSTEIN-BARR VIRUS NUCLEAR ANTIGENS; EVOLUTION, MOLECULAR; GENE DELETION; HERPESVIRUS 4, HUMAN; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, RNA; SILENT MUTATION; STOMACH NEOPLASMS; TRANSCRIPTOME; VIRAL MATRIX PROTEINS; VIRAL PROTEINS;

EID: 84947616523     PISSN: 09208569     EISSN: 1572994X     Source Type: Journal    
DOI: 10.1007/s11262-015-1248-z     Document Type: Article

References (50)

1. M.A. Epstein, B.G. Achong, Y.M. Barr, Lancet 1, 702–703 (1964)
2. M.A. Epstein, Y.M. Barr, Lancet 1, 252–253 (1964)
3. H. zur Hausen, H. Schulte-Holthausen, G. Klein, W. Henle, G. Henle, P. Clifford, L. Santesson, Nature 228, 1056–1058 (1970)
4. L.M. Weiss, J.G. Strickler, R.A. Warnke, D.T. Purtilo, J. Sklar, Am. J. Pathol. 129, 86–91 (1987)
5. J.F. Jones, S. Shurin, C. Abramowsky, R.R. Tubbs, C.G. Sciotto, R. Wahl, J. Sands, D. Gottman, B.Z. Katz, J. Sklar, N. Engl. J. Med. 318, 733–741 (1988)
6. G. Murphy, R. Pfeiffer, M.C. Camargo, C.S. Rabkin, Gastroenterology 137, 824–833 (2009)
7. D.E. Burgess, C.B. Woodman, K.J. Flavell, D.C. Rowlands, J. Crocker, K. Scott, J.P. Biddulph, L.S. Young, P.G. Murray, Br. J. Cancer 86, 702–704 (2002)
8. M. Fukayama, Y. Hayashi, Y. Iwasaki, J. Chong, T. Ooba, T. Takizawa, M. Koike, S. Mizutani, M. Miyaki, K. Hirai, Lab. Investig. J. Tech. Methods Pathol. 71, 73–81 (1994)
9. K. Takada, Mol. Pathol. 53, 255–261 (2000)
10. P. Busson, C. Keryer, T. Ooka, M. Corbex, Trends Microbiol. 12, 356–360 (2004)
11. R.H. Edwards, F. Seillier-Moiseiwitsch, N. Raab-Traub, Virology 261, 79–95 (1999)
12. M.I. Gutierrez, G. Spangler, D. Kingma, M. Raffeld, I. Guerrero, O. Misad, E.S. Jaffe, I.T. Magrath, K. Bhatia, Blood 92, 600–606 (1998)
13. Y.Z. Jing, Y. Wang, Y.P. Jia, B. Luo, Chin. J. Cancer 29, 1000–1005 (2010)
14. N.S. Sung, R.H. Edwards, F. Seillier-Moiseiwitsch, A.G. Perkins, Y. Zeng, N. Raab-Traub, Int. J. Cancer 76, 207–215 (1998)
15. L.L. Zhang, D.J. Li, Z.H. Li, X.S. Zhang, R.H. Zhang, X.J. Yu, L.Z. Chen, Q.S. Feng, Y.X. Zeng, W.H. Jia, Aizheng, Chin. J. Cancer 26, 1047–1051 (2007)
16. X.S. Zhang, K.H. Song, H.Q. Mai, W.H. Jia, B.J. Feng, J.C. Xia, R.H. Zhang, L.X. Huang, X.J. Yu, Q.S. Feng, P. Huang, J.J. Chen, Y.X. Zeng, Cancer Lett. 176, 65–73 (2002)
17. X.S. Zhang, H.H. Wang, L.F. Hu, A. Li, R.H. Zhang, H.Q. Mai, J.C. Xia, L.Z. Chen, Y.X. Zeng, Cancer Lett. 211, 11–18 (2004)
18. G. Miller, T. Shope, H. Lisco, D. Stitt, M. Lipman, Proc. Natl. Acad. Sci. U.S.A. 69, 383–387 (1972)
19. J. Skare, C. Edson, J. Farley, J.L. Strominger, J. Virol. 44, 1088–1091 (1982)
20. M.S. Zeng, D.J. Li, Q.L. Liu, L.B. Song, M.Z. Li, R.H. Zhang, X.J. Yu, H.M. Wang, I. Ernberg, Y.X. Zeng, J. Virol. 79, 15323–15330 (2005)
21. P. Liu, X. Fang, Z. Feng, Y.M. Guo, R.J. Peng, T. Liu, Z. Huang, Y. Feng, X. Sun, Z. Xiong, X. Guo, S.S. Pang, B. Wang, X. Lv, F.T. Feng, D.J. Li, L.Z. Chen, Q.S. Feng, W.L. Huang, M.S. Zeng, J.X. Bei, Y. Zhang, Y.X. Zeng, J. Virol. 85, 11291–11299 (2011)
22. H. Kwok, A.H. Tong, C.H. Lin, S. Lok, P.J. Farrell, D.L. Kwong, A.K. Chiang, PLoS One 7, e36939 (2012)
23. N. Raab-Traub, T. Dambaugh, E. Kieff, Cell 22, 257–267 (1980)
24. R. Baer, A.T. Bankier, M.D. Biggin, P.L. Deininger, P.J. Farrell, T.J. Gibson, G. Hatfull, G.S. Hudson, S.C. Satchwell, C. Seguin et al., Nature 310, 207–211 (1984)
25. A. Dolan, C. Addison, D. Gatherer, A.J. Davison, D.J. McGeoch, Virology 350, 164–170 (2006)
26. W.J. Ansorge, New Biotechnol. 25, 195–203 (2009)
27. J. Shendure, H. Ji, Nat. Biotechnol. 26, 1135–1145 (2008)
28. S.T. Oh, J.S. Seo, U.Y. Moon, K.H. Kang, D.J. Shin, S.K. Yoon, W.H. Kim, J.G. Park, S.K. Lee, Virology 320, 330–336 (2004)
29. K. Tamura, J. Dudley, M. Nei, S. Kumar, Mol. Biol. Evol. 24, 1596–1599 (2007)
30. D. Gordon, C. Abajian, P. Green, Genome Res. 8, 195–202 (1998)
31. L.S. Chou, C.S. Liu, B. Boese, X. Zhang, R. Mao, Clin. Chem. 56, 62–72 (2010)
32. K. Tamura, G. Stecher, D. Peterson, A. Filipski, S. Kumar, Mol. Biol. Evol. 30, 2725–2729 (2013)
33. Y. Wang, X. Liu, X. Xing, Y. Cui, C. Zhao, B. Luo, Virus Res. 147, 258–264 (2010)
34. M.J. Strong, G. Xu, J. Coco, C. Baribault, D.S. Vinay, M.R. Lacey, A.L. Strong, T.A. Lehman, M.B. Seddon, Z. Lin, M. Concha, M. Baddoo, M. Ferris, K.F. Swan, D.E. Sullivan, M.E. Burow, C.M. Taylor, E.K. Flemington, PLoS Pathog. 9, e1003341 (2013)
35. Z. Lin, X. Wang, M.J. Strong, M. Concha, M. Baddoo, G. Xu, C. Baribault, C. Fewell, W. Hulme, D. Hedges, C.M. Taylor, E.K. Flemington, J. Virol. 87, 1172–1182 (2013)
36. G. Santpere, F. Darre, S. Blanco, A. Alcami, P. Villoslada, Mar Alba M., and Navarro A. Genome Biol. Evol. 6, 846–860 (2014)
37. K. Hayashi, W.G. Chen, Y.Y. Chen, I. Murakami, H.L. Chen, N. Ohara, S. Nose, K. Hamaya, S. Matsui, M.M. Bacchi, C.E. Bacchi, K.L. Chang, L.M. Weiss, Am. J. Pathol. 152, 191–198 (1998)
38. H.S. Lee, M.S. Chang, H.K. Yang, B.L. Lee, W.H. Kim, Clin. Cancer Res. 10, 1698–1705 (2004)
39. S.Y. Leung, S.T. Yuen, L.P. Chung, A.S. Chan, M.P. Wong, Int. J. Cancer 72, 225–230 (1997)
40. B. Luo, Y. Wang, X.F. Wang, H. Liang, L.P. Yan, B.H. Huang, P. Zhao, World J. Gastroenterol. 11, 629–633 (2005)
41. A. zur Hausen, A.A. Brink, M.E. Craanen, J.M. Middeldorp, C.J. Meijer, A.J. van den Brule, Cancer Res. 60, 2745–2748 (2000)
42. D. Dominissini, S. Moshitch-Moshkovitz, N. Amariglio, G. Rechavi, Carcinogenesis 32, 1569–1577 (2011)
43. M. Bonvin, F. Achermann, I. Greeve, D. Stroka, A. Keogh, D. Inderbitzin, D. Candinas, P. Sommer, S. Wain-Hobson, J.P. Vartanian, J. Greeve, Hepatology (Baltimore, Md) 43, 1364–1374 (2006)
44. K.N. Bishop, R.K. Holmes, A.M. Sheehy, M.H. Malim, Science (New York, NY) 305, 645 (2004)
45. S. Henderson, A. Chakravarthy, X. Su, C. Boshoff, T.R. Fenton, Cell Rep. 7, 1833–1841 (2014)
46. S.Y. Kim, C. Park, H.J. Kim, J. Park, J. Hwang, J.I. Kim, M.G. Choi, S. Kim, K.M. Kim, M.S. Kang, Gastroenterology 148, 137–147 (2015)
47. S. Sanlioglu, P.K. Benson, J. Yang, E.M. Atkinson, T. Reynolds, J.F. Engelhardt, J. Virol. 74, 9184–9196 (2000)
48. Cancer Genome Atlas Research Network, Nature 513, 202–209 (2014)
49. L.S. Chesnokova, S.L. Nishimura, L.M. Hutt-Fletcher, Proc. Natl. Acad. Sci. U.S.A. 106, 20464–20469 (2009)
50. A.L. Palser, N.E. Grayson, R.E. White, C. Corton, S. Correia, M.M. Ba Abdullah, S.J. Watson, M. Cotten, J.R. Arrand, P.G. Murray, M.J. Allday, A.B. Rickinson, L.S. Young, P.J. Farrell, P. Kellam, J. Virol. 89, 5222–5237 (2015)