-
1
-
-
84868611622
-
Principles for designing ideal protein structures
-
CrossRef PubMed
-
Koga, N., Tatsumi-Koga, R., Liu, G., Xiao, R., Acton, T.B., Montelione, G.T. and Baker, D. (2012) Principles for designing ideal protein structures. Nature 491, 222-227 CrossRef PubMed
-
(2012)
Nature
, vol.491
, pp. 222-227
-
-
Koga, N.1
Tatsumi-Koga, R.2
Liu, G.3
Xiao, R.4
Acton, T.B.5
Montelione, G.T.6
Baker, D.7
-
2
-
-
0035783055
-
On the evolution of protein folds: Are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? J
-
CrossRef PubMed
-
Lupas, A.N., Ponting, C.P. and Russell, R.B. (2001) On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? J. Struct. Biol. 134, 191-203 CrossRef PubMed
-
(2001)
Struct. Biol
, vol.134
, pp. 191-203
-
-
Lupas, A.N.1
Ponting, C.P.2
Russell, R.B.3
-
3
-
-
0037195119
-
Expanding protein universe and its origin from the biological big bang
-
PMID CrossRef
-
Dokholyan, N.V., Shakhnovich, B. and Shakhnovich, E.I. (2002) Expanding protein universe and its origin from the biological big bang. Proc. Natl. Acad. Sci. U.S.A. 99, 14132-14136. PMID: CrossRef
-
(2002)
Proc. Natl. Acad. Sci. U.S.A
, vol.99
, pp. 14132-14136
-
-
Dokholyan, N.V.1
Shakhnovich, B.2
Shakhnovich, E.I.3
-
4
-
-
0027122748
-
Proteins. One thousand families for the molecular biologist
-
Chothia, C. (1992) Proteins. one thousand families for the molecular biologist. Nature 357, 543-544
-
(1992)
Nature
, vol.357
, pp. 543-544
-
-
Chothia, C.1
-
5
-
-
84877727787
-
On the universe of protein folds
-
CrossRef PubMed
-
Kolodny, R., Pereyaslavets, L., Samson, A.O. and Levitt, M. (2013) On the universe of protein folds. Annu. Rev. Biophys. 42, 559-582 CrossRef PubMed
-
(2013)
Annu. Rev. Biophys.
, vol.42
, pp. 559-582
-
-
Kolodny, R.1
Pereyaslavets, L.2
Samson, A.O.3
Levitt, M.4
-
6
-
-
84859898660
-
A beginner's guide to eukaryotic genome annotation
-
CrossRef PubMed
-
Yandell, M. and Ence, D. (2012) A beginner's guide to eukaryotic genome annotation. Nat. Rev. Genet. 13, 329-342 CrossRef PubMed
-
(2012)
Nat. Rev. Genet
, vol.13
, pp. 329-342
-
-
Yandell, M.1
Ence, D.2
-
7
-
-
84901611036
-
Mass-spectrometry-based draft of the human proteome
-
CrossRef PubMed
-
Wilhelm, M., Schlegl, J., Hahne, H., Gholami, A.M., Lieberenz, M., Savitski, M.M., Ziegler, E., Butzmann, L., Gessulat, S., Marx, H. et al. (2014). Mass-spectrometry-based draft of the human proteome. Nature 509, 582-587 CrossRef PubMed
-
(2014)
Nature
, vol.509
, pp. 582-587
-
-
Wilhelm, M.1
Schlegl, J.2
Hahne, H.3
Gholami, A.M.4
Lieberenz, M.5
Savitski, M.M.6
Ziegler, E.7
Butzmann, L.8
Gessulat, S.9
Marx, H.10
-
8
-
-
84873342385
-
High-resolution heteronuclear multidimensional NMR of proteins in living insect cells using a baculovirus protein expression system
-
CrossRef PubMed
-
Hamatsu, J., O'Donovan, D., Tanaka, T., Shirai, T., Hourai, Y., Mikawa, T., Ikeya, T., Mishima, M., Boucher, W., Smith, B.O. et al. (2013). High-resolution heteronuclear multidimensional NMR of proteins in living insect cells using a baculovirus protein expression system. J. Am. Chem. Soc. 135, 1688-1691 CrossRef PubMed
-
(2013)
J. Am. Chem. Soc
, vol.135
, pp. 1688-1691
-
-
Hamatsu, J.1
O'Donovan, D.2
Tanaka, T.3
Shirai, T.4
Hourai, Y.5
Mikawa, T.6
Ikeya, T.7
Mishima, M.8
Boucher, W.9
Smith, B.O.10
-
9
-
-
77955984132
-
Proteins that switch folds
-
CrossRef PubMed
-
Bryan, P.N. and Orban, J. (2010) Proteins that switch folds. Curr. Opin. Struct. Biol. 20, 482-488 CrossRef PubMed
-
(2010)
Curr. Opin. Struct. Biol
, vol.20
, pp. 482-488
-
-
Bryan, P.N.1
Orban, J.2
-
10
-
-
0030986375
-
Protein alchemy: Changing β-sheet into α-helix
-
CrossRef
-
Dalal, S., Balasubramanian, S. and Regan, L. (1997) Protein alchemy: Changing β-sheet into α-helix. Nat. Struct. Mol. Biol. 4, 548-552 CrossRef
-
(1997)
Nat. Struct. Mol. Biol
, vol.4
, pp. 548-552
-
-
Dalal, S.1
Balasubramanian, S.2
Regan, L.3
-
11
-
-
67649856815
-
Direct single-molecule observation of a protein living in two opposed native structures
-
CrossRef PubMed
-
Gambin, Y., Schug, A., Lemke, E.A., Lavinder, J.J., Ferreon, A.C.M., Magliery, T.J., Onuchic, J.N. and Deniz, A.A. (2009) Direct single-molecule observation of a protein living in two opposed native structures. Proc. Natl. Acad. Sci. U.S.A. 106, 10153-10158 CrossRef PubMed
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 10153-10158
-
-
Gambin, Y.1
Schug, A.2
Lemke, E.A.3
Lavinder, J.J.4
Ferreon, A.C.M.5
Magliery, T.J.6
Onuchic, J.N.7
Deniz, A.A.8
-
12
-
-
84906322381
-
Evolutionary relationship of two ancient protein superfolds
-
CrossRef PubMed
-
Farías-Rico, J.A., Schmidt, S. and Höcker, B. (2014) Evolutionary relationship of two ancient protein superfolds. Nat. Chem. Biol. 10, 710-715 CrossRef PubMed
-
(2014)
Nat. Chem. Biol
, vol.10
, pp. 710-715
-
-
Farías-Rico, J.A.1
Schmidt, S.2
Höcker, B.3
-
13
-
-
75849116590
-
A minimal sequence code for switching protein structure and function
-
CrossRef PubMed
-
Alexander, P.A., He, Y., Chen, Y., Orban, J. and Bryan, P.N. (2009) A minimal sequence code for switching protein structure and function. Proc. Natl. Acad. Sci. U.S.A. 106, 21149-21154 CrossRef PubMed
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 21149-21154
-
-
Alexander, P.A.1
He, Y.2
Chen, Y.3
Orban, J.4
Bryan, P.N.5
-
14
-
-
84866928115
-
Evolutionary dynamics on protein bi-stability landscapes can potentially resolve adaptive conflicts
-
CrossRef PubMed
-
Sikosek, T., Bornberg-Bauer, E. and Chan, H.S. (2012) Evolutionary dynamics on protein bi-stability landscapes can potentially resolve adaptive conflicts. PLoS Comput. Biol. 8, e1002659 CrossRef PubMed
-
(2012)
PLoS Comput. Biol
, vol.8
, pp. e1002659
-
-
Sikosek, T.1
Bornberg-Bauer, E.2
Chan, H.S.3
-
15
-
-
42449084477
-
Interconversion between two unrelated protein folds in the lymphotactin native state
-
CrossRef PubMed
-
Tuinstra, R.L., Peterson, F.C., Kutlesa, S., Elgin, E.S., Kron, M.A. and Volkman, B.F. (2008) Interconversion between two unrelated protein folds in the lymphotactin native state. Proc. Natl. Acad. Sci. U.S.A. 105, 5057-5062 CrossRef PubMed
-
(2008)
Proc. Natl. Acad. Sci. U.S.A
, vol.105
, pp. 5057-5062
-
-
Tuinstra, R.L.1
Peterson, F.C.2
Kutlesa, S.3
Elgin, E.S.4
Kron, M.A.5
Volkman, B.F.6
-
16
-
-
48249113702
-
Predicting protein function from domain content
-
CrossRef PubMed
-
Forslund, K. and Sonnhammer, E. L.L. (2008) Predicting protein function from domain content. Bioinformatics 24, 1681-1687 CrossRef PubMed
-
(2008)
Bioinformatics
, vol.24
, pp. 1681-1687
-
-
Forslund, K.1
Sonnhammer, E.L.L.2
-
17
-
-
50849114838
-
Arrangements in the modular evolution of proteins
-
CrossRef PubMed
-
Moore, A.D., Björklund, A.K., Ekman, D., Bornberg-Bauer, E. and Elofsson, A. (2008) Arrangements in the modular evolution of proteins. Trend. Biochem. Sci. 33, 444-451 CrossRef PubMed
-
(2008)
Trend. Biochem. Sci
, vol.33
, pp. 444-451
-
-
Moore, A.D.1
Björklund, A.K.2
Ekman, D.3
Bornberg-Bauer, E.4
Elofsson, A.5
-
18
-
-
77955564198
-
How do new proteins arise?
-
CrossRef PubMed
-
Bornberg-Bauer, E., Huylmans, A.-K. and Sikosek, T. (2010) How do new proteins arise? Curr. Opin. Struct. Biol. 20, 390-396 CrossRef PubMed
-
(2010)
Curr. Opin. Struct. Biol
, vol.20
, pp. 390-396
-
-
Bornberg-Bauer, E.1
Huylmans, A.-K.2
Sikosek, T.3
-
19
-
-
78650413957
-
Circular permutation: A different way to engineer enzyme structure and function
-
CrossRef PubMed
-
Yu, Y. and Lutz, S. (2011) Circular permutation: a different way to engineer enzyme structure and function. Trends Biotechnol 29, 18-25 CrossRef PubMed
-
(2011)
Trends Biotechnol
, vol.29
, pp. 18-25
-
-
Yu, Y.1
Lutz, S.2
-
20
-
-
16344391964
-
Rapid motif-based prediction of circular permutations in multi-domain proteins
-
CrossRef PubMed
-
Weiner, J., Thomas, G. and Bornberg-Bauer, E. (2005) Rapid motif-based prediction of circular permutations in multi-domain proteins. Bioinformatics 21, 932-937 CrossRef PubMed
-
(2005)
Bioinformatics
, vol.21
, pp. 932-937
-
-
Weiner, J.1
Thomas, G.2
Bornberg-Bauer, E.3
-
21
-
-
84892694478
-
Rapid similarity search of proteins using alignments of domain arrangements
-
CrossRef PubMed
-
Terrapon, N., Weiner, J., Grath, S., Moore, A.D. and Bornberg-Bauer, E. (2014) Rapid similarity search of proteins using alignments of domain arrangements. Bioinformatics 30, 274-281 CrossRef PubMed
-
(2014)
Bioinformatics
, vol.30
, pp. 274-281
-
-
Terrapon, N.1
Weiner, J.2
Grath, S.3
Moore, A.D.4
Bornberg-Bauer, E.5
-
22
-
-
84892753701
-
DoMosaics: Software for domain arrangement visualization and domain-centric analysis of proteins
-
CrossRef PubMed
-
Moore, A.D., Held, A., Terrapon, N., Weiner, J. and Bornberg-Bauer, E. (2014) DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins. Bioinformatics 30, 282-283 CrossRef PubMed
-
(2014)
Bioinformatics
, vol.30
, pp. 282-283
-
-
Moore, A.D.1
Held, A.2
Terrapon, N.3
Weiner, J.4
Bornberg-Bauer, E.5
-
23
-
-
84896504155
-
The life cycle of drosophila orphan genes
-
CrossRef PubMed
-
Palmieri, N., Kosiol, C. and Schlö tterer, C. (2014) The life cycle of drosophila orphan genes. Elife 3, e01311 CrossRef PubMed
-
(2014)
Elife
, vol.3
, pp. e01311
-
-
Palmieri, N.1
Kosiol, C.2
Schlötterer, C.3
-
24
-
-
84876523559
-
Mechanisms and dynamics of orphan gene emergence in insect genomes
-
CrossRef PubMed
-
Wissler, L., Gadau, J., Simola, D.F., Helmkampf, M. and Bornberg-Bauer, E. (2013) Mechanisms and dynamics of orphan gene emergence in insect genomes. Genome Biol. Evol. 5, 439-455 CrossRef PubMed
-
(2013)
Genome Biol. Evol
, vol.5
, pp. 439-455
-
-
Wissler, L.1
Gadau, J.2
Simola, D.F.3
Helmkampf, M.4
Bornberg-Bauer, E.5
-
25
-
-
0142028990
-
An evolutionary analysis of orphan genes in drosophila
-
CrossRef PubMed
-
Domazet-Loso, T. and Tautz, D. (2003) An evolutionary analysis of orphan genes in drosophila. Genome Res 13, 2213-2219 CrossRef PubMed
-
(2003)
Genome Res
, vol.13
, pp. 2213-2219
-
-
Domazet-Loso, T.1
Tautz, D.2
-
26
-
-
80052969570
-
The evolutionary origin of orphan genes
-
CrossRef PubMed
-
Tautz, D. and Domazet-Lošo, T. (2011) The evolutionary origin of orphan genes. Nat. Rev. Genet. 12, 692-702 CrossRef PubMed
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 692-702
-
-
Tautz, D.1
Domazet-Lošo, T.2
-
27
-
-
84863988094
-
Proto-genes and de novo gene birth
-
CrossRef PubMed
-
Carvunis, A.-R., Rolland, T., Wapinski, I., Calderwood, M.A., Yildirim, M.A., Simonis, N., Charloteaux, B., Hidalgo, C.A., Barbette, J., Santhanam, B. et al. (2012) Proto-genes and de novo gene birth. Nature 487, 370-374 CrossRef PubMed
-
(2012)
Nature
, vol.487
, pp. 370-374
-
-
Carvunis, A.-R.1
Rolland, T.2
Wapinski, I.3
Calderwood, M.A.4
Yildirim, M.A.5
Simonis, N.6
Charloteaux, B.7
Hidalgo, C.A.8
Barbette, J.9
Santhanam, B.10
-
28
-
-
69449089723
-
More than just orphans: Are taxonomically-restricted genes important in evolution?
-
CrossRef PubMed
-
Khalturin, K., Hemmrich, G., Fraune, S., Augustin, R. and Bosch, T.C. (2009) More than just orphans: are taxonomically-restricted genes important in evolution? Trend. Genet. 25, 404-413 CrossRef PubMed
-
(2009)
Trend Genet
, vol.25
, pp. 404-413
-
-
Khalturin, K.1
Hemmrich, G.2
Fraune, S.3
Augustin, R.4
Bosch, T.C.5
-
29
-
-
60149097110
-
Origin of primate orphan genes: A comparative genomics approach
-
CrossRef PubMed
-
Toll-Riera, M., Bosch, N., Bellora, N., Castelo, R., Armengol, L., Estivill, X. and Albà, M.M. (2009) Origin of primate orphan genes: A comparative genomics approach. Mol. Biol. Evol. 26, 603-612 CrossRef PubMed
-
(2009)
Mol. Biol. Evol
, vol.26
, pp. 603-612
-
-
Toll-Riera, M.1
Bosch, N.2
Bellora, N.3
Castelo, R.4
Armengol, L.5
Estivill, X.6
Albà, M.M.7
-
30
-
-
84874013460
-
Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution
-
CrossRef PubMed
-
Neme, R. and Tautz, D. (2013) Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution. BMC Genomics. 14, 117 CrossRef PubMed
-
(2013)
BMC Genomics
, vol.14
, pp. 117
-
-
Neme, R.1
Tautz, D.2
-
31
-
-
84857384562
-
Putatively noncoding transcripts show extensive association with ribosomes
-
CrossRef PubMed
-
Wilson, B.A. and Masel, J. (2011) Putatively noncoding transcripts show extensive association with ribosomes. Genome Biol. Evol. 3, 1245-1252 CrossRef PubMed
-
(2011)
Genome Biol. Evol
, vol.3
, pp. 1245-1252
-
-
Wilson, B.A.1
Masel, J.2
-
33
-
-
23944490117
-
Missense meanderings in sequence space: A biophysical view of protein evolution
-
CrossRef PubMed
-
DePristo, M.A., Weinreich, D.M. and Hartl, D.L. (2005) Missense meanderings in sequence space: a biophysical view of protein evolution. Nat. Rev. Genet. 6, 678-687 CrossRef PubMed
-
(2005)
Nat. Rev. Genet
, vol.6
, pp. 678-687
-
-
DePristo, M.A.1
Weinreich, D.M.2
Hartl, D.L.3
-
34
-
-
0029120253
-
Cooperatively folded proteins in random sequence libraries
-
CrossRef
-
Davidson, A.R., Lumb, K.J. and Sauer, R.T. (1995) Cooperatively folded proteins in random sequence libraries. Nat. Struct. Mol. Biol. 2, 856-864 CrossRef
-
(1995)
Nat. Struct. Mol. Biol
, vol.2
, pp. 856-864
-
-
Davidson, A.R.1
Lumb, K.J.2
Sauer, R.T.3
-
35
-
-
0035810165
-
Functional proteins from a random -sequence library
-
CrossRef PubMed
-
Keefe, A.D. and Szostak, J.W. (2001) Functional proteins from a random-sequence library. Nature 410, 715-718 CrossRef PubMed
-
(2001)
Nature
, vol.410
, pp. 715-718
-
-
Keefe, A.D.1
Szostak, J.W.2
-
36
-
-
70349270547
-
Emergence of a new gene from an intergenic region
-
CrossRef PubMed
-
Heinen, T.J. A.J., Staubach, F., Häming, D. and Tautz, D. (2009). Emergence of a new gene from an intergenic region. Curr. Biol. 19, 1527-1531 CrossRef PubMed
-
(2009)
Curr. Biol
, vol.19
, pp. 1527-1531
-
-
Heinen, T.J.A.J.1
Staubach, F.2
Häming, D.3
Tautz, D.4
-
37
-
-
84924063355
-
The landscape of long noncoding RNAs in the human transcriptome
-
CrossRef PubMed
-
Iyer, M.K., Niknafs, Y.S., Malik, R., Singhal, U., Sahu, A., Hosono, Y., Barrette, T.R., Prensner, J.R., Evans, J.R., Zhao, S. et al. (2015) The landscape of long noncoding RNAs in the human transcriptome. Nat. Genet. 47, 199-208 CrossRef PubMed
-
(2015)
Nat. Genet
, vol.47
, pp. 199-208
-
-
Iyer, M.K.1
Niknafs, Y.S.2
Malik, R.3
Singhal, U.4
Sahu, A.5
Hosono, Y.6
Barrette, T.R.7
Prensner, J.R.8
Evans, J.R.9
Zhao, S.10
-
38
-
-
84926342784
-
Primary transcripts of microRNAs encode regulatory peptides
-
CrossRef PubMed
-
Lauressergues, D., Couzigou, J.-M., Clemente, H.S., Martinez, Y., Dunand, C., Bé card, G. and Combier, J.-P. (2015) Primary transcripts of microRNAs encode regulatory peptides. Nature 520, 90-93 CrossRef PubMed
-
(2015)
Nature
, vol.520
, pp. 90-93
-
-
Lauressergues, D.1
Couzigou, J.-M.2
Clemente, H.S.3
Martinez, Y.4
Dunand, C.5
Bécard, G.6
Combier, J.-P.7
-
39
-
-
84893906285
-
Origin and spread of de novo genes in drosophila melanogaster populations
-
CrossRef PubMed
-
Zhao, L., Saelao, P., Jones, C.D. and Begun, D.J. (2014) Origin and spread of de novo genes in drosophila melanogaster populations. Science 343, 769-772 CrossRef PubMed
-
(2014)
Science
, vol.343
, pp. 769-772
-
-
Zhao, L.1
Saelao, P.2
Jones, C.D.3
Begun, D.J.4
-
40
-
-
0003515251
-
-
1st edn., Springer- Verlag, New York CrossRef
-
Ohno, S. (1970) Evolution by gene duplication, 1st edn., Springer-Verlag, New York CrossRef
-
(1970)
Evolution by Gene Duplication
-
-
Ohno, S.1
-
41
-
-
33646268799
-
Domain deletions and substitutions in the modular protein evolution
-
CrossRef PubMed
-
Weiner, J., Beaussart, F. and Bornberg-Bauer, E. (2006) Domain deletions and substitutions in the modular protein evolution. FEBS J 273, 2037-2047 CrossRef PubMed
-
(2006)
FEBS J
, vol.273
, pp. 2037-2047
-
-
Weiner, J.1
Beaussart, F.2
Bornberg-Bauer, E.3
-
42
-
-
84947234790
-
-
in the press
-
Bitard-Feildel, T., Heberlein, M., Bornberg-Bauer, E. and Callebaut, I Detection of orphan domains in drosophila using "hydrophobic cluster analysis. Biochimie, in the press
-
Detection of Orphan Domains in Drosophila Using "hydrophobic Cluster Analysis. Biochimie
-
-
Bitard-Feildel, T.1
Heberlein, M.2
Bornberg-Bauer, E.3
Callebaut, I.4
-
43
-
-
84887306726
-
Correlated occurrence and bypass of frame-shifting insertion-deletions (InDels) to give functional proteins
-
CrossRef PubMed
-
Rockah-Shmuel, L., Tóth-Petróczy, Á., Sela, A., Wurtzel, O., Sorek, R. and Tawfik, D.S. (2013) Correlated occurrence and bypass of frame-shifting insertion-deletions (InDels) to give functional proteins. PLoS Genet 9, e1003882 CrossRef PubMed
-
(2013)
PLoS Genet
, vol.9
, pp. e1003882
-
-
Rockah-Shmuel, L.1
Tóth-Petróczy, A.2
Sela, A.3
Wurtzel, O.4
Sorek, R.5
Tawfik, D.S.6
-
44
-
-
84857224836
-
Role of low-complexity sequences in the formation of novel protein coding sequences
-
CrossRef PubMed
-
Toll-Riera, M., Radó-Trilla, N., Martys, F. and Albà, M.M. (2012) Role of low-complexity sequences in the formation of novel protein coding sequences. Mol. Biol. Evol. 29, 883-886 CrossRef PubMed
-
(2012)
Mol. Biol. Evol
, vol.29
, pp. 883-886
-
-
Toll-Riera, M.1
Radó-Trilla, N.2
Martys, F.3
Albà, M.M.4
-
45
-
-
84871231239
-
Dissecting the role of low-complexity regions in the evolution of vertebrate proteins
-
CrossRef PubMed
-
Radó-Trilla, N. and Albà, M. (2012) Dissecting the role of low-complexity regions in the evolution of vertebrate proteins. BMC Evol. Biol. 12, 155 CrossRef PubMed
-
(2012)
BMC Evol. Biol
, vol.12
, pp. 155
-
-
Radó-Trilla, N.1
Albà, M.2
-
46
-
-
67650868984
-
Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins
-
CrossRef PubMed
-
Simon, M. and Hancock, J.M. (2009) Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins. Genome Biol 10, R59 CrossRef PubMed
-
(2009)
Genome Biol
, vol.10
, pp. R59
-
-
Simon, M.1
Hancock, J.M.2
-
47
-
-
79952436419
-
Structural biology: Breaking the protein rules
-
CrossRef
-
Chouard, T. (2011) Structural biology: Breaking the protein rules. Nature 471, 151-153 CrossRef
-
(2011)
Nature
, vol.471
, pp. 151-153
-
-
Chouard, T.1
-
48
-
-
84901445186
-
Protein flexibility facilitates quaternary structure assembly and evolution
-
CrossRef PubMed
-
Marsh, J.A. and Teichmann, S.A. (2014) Protein flexibility facilitates quaternary structure assembly and evolution. PLoS Biol 12, e1001870 CrossRef PubMed
-
(2014)
PLoS Biol
, vol.12
, pp. e1001870
-
-
Marsh, J.A.1
Teichmann, S.A.2
-
49
-
-
84889013725
-
Integration of new genes into cellular networks, and their structural maturation
-
CrossRef PubMed
-
Abrusán, G. (2013) Integration of new genes into cellular networks, and their structural maturation. Genetics 195, 1407-1417 CrossRef PubMed
-
(2013)
Genetics
, vol.195
, pp. 1407-1417
-
-
Abrusán, G.1
-
50
-
-
84902446851
-
Classification of intrinsically disordered regions and proteins
-
CrossRef PubMed
-
vander Lee, R., Buljan, M., Lang, B., Weatheritt, R.J., Daughdrill, G.W., Dunker, A.K., Fuxreiter, M., Gough, J., Gsponer, J., Jones, D.T. et al. (2014). Classification of intrinsically disordered regions and proteins. Chem. Rev. 114, 6589-6631 CrossRef PubMed
-
(2014)
Chem. Rev
, vol.114
, pp. 6589-6631
-
-
Vander Lee, R.1
Buljan, M.2
Lang, B.3
Weatheritt, R.J.4
Daughdrill, G.W.5
Dunker, A.K.6
Fuxreiter, M.7
Gough, J.8
Gsponer, J.9
Jones, D.T.10
-
51
-
-
84876911760
-
Distinct types of disorder in the human proteome: Functional implications for alternative splicing
-
CrossRef PubMed
-
Colak, R., Kim, T., Michaut, M., Sun, M., Irimia, M., Bellay, J., Myers, C.L., Blencowe, B.J. and Kim, P.M. (2013) Distinct types of disorder in the human proteome: functional implications for alternative splicing. PLoS Comput. Biol. 9, e1003030 CrossRef PubMed
-
(2013)
PLoS Comput. Biol
, vol.9
, pp. e1003030
-
-
Colak, R.1
Kim, T.2
Michaut, M.3
Sun, M.4
Irimia, M.5
Bellay, J.6
Myers, C.L.7
Blencowe, B.J.8
Kim, P.M.9
-
52
-
-
34548736602
-
Molecular dynamics simulations reveal a disorder-to-order transition on phosphorylation of smooth muscle myosin
-
CrossRef PubMed
-
Espinoza-Fonseca, L.M., Kast, D. and Thomas, D.D. (2007) Molecular dynamics simulations reveal a disorder-to-order transition on phosphorylation of smooth muscle myosin. Biophys. J. 93, 2083-2090 CrossRef PubMed
-
(2007)
Biophys. J
, vol.93
, pp. 2083-2090
-
-
Espinoza-Fonseca, L.M.1
Kast, D.2
Thomas, D.D.3
-
53
-
-
84927909835
-
Folding upon phosphorylation: Translational regulation by a disorder-to-order transition
-
CrossRef PubMed
-
Metskas, L.A. and Rhoades, E. (2015) Folding upon phosphorylation: translational regulation by a disorder-to-order transition. Trends Biochem. Sci. 40, 243-244 CrossRef PubMed
-
(2015)
Trends Biochem. Sci
, vol.40
, pp. 243-244
-
-
Metskas, L.A.1
Rhoades, E.2
-
54
-
-
79958044914
-
Unstructural biology coming of age
-
CrossRef PubMed
-
Tompa, P. (2011) Unstructural biology coming of age. Curr. Opin. Struct. Biol. 21, 419-425 CrossRef PubMed
-
(2011)
Curr. Opin. Struct. Biol
, vol.21
, pp. 419-425
-
-
Tompa, P.1
-
55
-
-
84879172714
-
Dynamics and adaptive benefits of modular protein evolution
-
CrossRef PubMed
-
Bornberg-Bauer, E. and Albà, M.M. (2013) Dynamics and adaptive benefits of modular protein evolution. Curr. Opin. Struct. Biol. 23, 459-466 CrossRef PubMed
-
(2013)
Curr. Opin. Struct. Biol
, vol.23
, pp. 459-466
-
-
Bornberg-Bauer, E.1
Albà, M.M.2
-
56
-
-
84855873427
-
The dynamics and evolutionary potential of domain loss and emergence
-
CrossRef PubMed
-
Moore, A.D. and Bornberg-Bauer, E. (2012) The dynamics and evolutionary potential of domain loss and emergence. Mol. Biol. Evol. 29, 787-796 CrossRef PubMed
-
(2012)
Mol. Biol. Evol
, vol.29
, pp. 787-796
-
-
Moore, A.D.1
Bornberg-Bauer, E.2
-
57
-
-
84919629938
-
Extensive copy-number variation of young genes across stickleback populations
-
CrossRef PubMed
-
Chain, F.J.J., Feulner, P.G.D., Panchal, M., Eizaguirre, C., Samonte, I.E., Kalbe, M., Lenz, T.L., Stoll, M., Bornberg-Bauer, E., Milinski, M. and Reusch, T.B.H. (2014) Extensive copy-number variation of young genes across stickleback populations. PLoS Genet 10, e1004830 CrossRef PubMed
-
(2014)
PLoS Genet
, vol.10
, pp. e1004830
-
-
Chain, F.J.J.1
Feulner, P.G.D.2
Panchal, M.3
Eizaguirre, C.4
Samonte, I.E.5
Kalbe, M.6
Lenz, T.L.7
Stoll, M.8
Bornberg-Bauer, E.9
Milinski, M.10
Reusch, T.B.H.11
-
58
-
-
77955584075
-
Analyzing protein structure and function using ancestral gene reconstruction
-
CrossRef PubMed
-
Harms, M.J. and Thornton, J.W. (2010) Analyzing protein structure and function using ancestral gene reconstruction. Curr. Opin. Struct. Biol. 20, 360-366 CrossRef PubMed
-
(2010)
Curr. Opin. Struct. Biol
, vol.20
, pp. 360-366
-
-
Harms, M.J.1
Thornton, J.W.2
-
59
-
-
84858077472
-
The pfam protein families database
-
CrossRef PubMed
-
Punta, M., Coggill, P.C., Eberhardt, R.Y., Mistry, J., Tate, J., Boursnell, C., Pang, N., Forslund, K., Ceric, G., Clements, J. et al. (2012) The pfam protein families database. Nucleic Acids Res. 40, D290-D301 CrossRef PubMed
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D290-D301
-
-
Punta, M.1
Coggill, P.C.2
Eberhardt, R.Y.3
Mistry, J.4
Tate, J.5
Boursnell, C.6
Pang, N.7
Forslund, K.8
Ceric, G.9
Clements, J.10
-
60
-
-
24044538903
-
IUPred: Web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
CrossRef PubMed
-
Dosztányi, Z., Csizmok, V., Tompa, P. and Simon, I. (2005) IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 21, 3433-3434 CrossRef PubMed
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Dosztányi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
61
-
-
84887290206
-
Comprehensive repertoire of foldable regions within whole genomes
-
CrossRef PubMed
-
Faure, G. and Callebaut, I. (2013) Comprehensive repertoire of foldable regions within whole genomes. PLoS Comput. Biol. 9, e1003280 CrossRef PubMed
-
(2013)
PLoS Comput. Biol
, vol.9
, pp. e1003280
-
-
Faure, G.1
Callebaut, I.2
-
62
-
-
33846630895
-
A generalized analysis of hydrophobic and loop clusters within globular protein sequences
-
CrossRef PubMed
-
Eudes, R., Tuan, K.L., Delettré, J., Mornon, J.-P. and Callebaut, I. (2007) A generalized analysis of hydrophobic and loop clusters within globular protein sequences. BMC Struct. Biol. 7, 2 CrossRef PubMed
-
(2007)
BMC Struct. Biol
, vol.7
, pp. 2
-
-
Eudes, R.1
Tuan, K.L.2
Delettré, J.3
Mornon, J.-P.4
Callebaut, I.5
-
63
-
-
84876566349
-
OrthoDB: A hierarchical catalog of animal, fungal and bacterial orthologs
-
CrossRef PubMed
-
Waterhouse, R.M., Tegenfeldt, F., Li, J., Zdobnov, E.M. and Kriventseva, E.V. (2013) OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs. Nucleic Acids Res. 41, D358-365 CrossRef PubMed
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D358-365
-
-
Waterhouse, R.M.1
Tegenfeldt, F.2
Li, J.3
Zdobnov, E.M.4
Kriventseva, E.V.5
-
64
-
-
77954272855
-
TranslatorX: Multiple alignment of nucleotide sequences guided by amino acid translations
-
CrossRef PubMed
-
Abascal, F., Zardoya, R. and Telford, M.J. (2010) TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. Nucleic Acids Res. 38, W7-W13 CrossRef PubMed
-
(2010)
Nucleic Acids Res
, vol.38
, pp. W7-W13
-
-
Abascal, F.1
Zardoya, R.2
Telford, M.J.3
-
65
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
CrossRef PubMed
-
Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797 CrossRef PubMed
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
66
-
-
17444412589
-
Detecting amino acid sites under positive selection and purifying selection
-
CrossRef PubMed
-
Massingham, T. and Goldman, N. (2005) Detecting amino acid sites under positive selection and purifying selection. Genetics 169, 1753-1762 CrossRef PubMed
-
(2005)
Genetics
, vol.169
, pp. 1753-1762
-
-
Massingham, T.1
Goldman, N.2
-
67
-
-
84909606775
-
Phylogenomics resolves the timing and pattern of insect evolution
-
CrossRef PubMed
-
Misof, B., Liu, S., Meusemann, K., Peters, R.S., Donath, A., Mayer, C., Frandsen, P.B., Ware, J., Flouri, T., Beutel, R.G., Niehuis, O. et al. (2014). Phylogenomics resolves the timing and pattern of insect evolution. Science 346, 763-767 CrossRef PubMed
-
(2014)
Science
, vol.346
, pp. 763-767
-
-
Misof, B.1
Liu, S.2
Meusemann, K.3
Peters, R.S.4
Donath, A.5
Mayer, C.6
Frandsen, P.B.7
Ware, J.8
Flouri, T.9
Beutel, R.G.10
Niehuis, O.11
|