Erratum: Dynamic changes in host gene expression associated with H5N8 avian influenza virus infection in mice (Scientific Reports (2015) 5 (16512) DOI: 10.1038/srep16512);Dynamic changes in host gene expression associated with H5N8 avian influenza virus infection in mice

Scientific Reports

Volumn 5, Issue , 2015, Pages

  Park, Su Jin ^a   Kumar, Mukesh ^b   Kwon, Hyeok Il ^a   Seong, Rak Kyun ^c   Han, Kyudong ^d   Song, Jae Min ^e   Kim, Chul Joong ^f   Choi, Young Ki ^a   Shin, Ok Sarah ^c,g  

^a Chungbuk National University College of Medicine   (South Korea)

^b UNIVERSITY OF HAWAII   (United States)

^c Korea University College of Medicine   (South Korea)

^d Dankook University   (South Korea)

^e Sungshin Women's University   (South Korea)

^f Chungnam National University   (South Korea)

^g Korea University College of Medicine   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

DEATH RECEPTOR; INTERFERON; TRANSCRIPTOME;

ANIMAL; BIOLOGY; CLASSIFICATION; CLUSTER ANALYSIS; DISEASE MODEL; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; HIGH THROUGHPUT SEQUENCING; HOST PATHOGEN INTERACTION; INFLUENZA A VIRUS; INFLUENZA A VIRUS (H5N1); METABOLISM; MOUSE; ORTHOMYXOVIRUS INFECTION; PROCEDURES; SIGNAL TRANSDUCTION; VIROLOGY;

ANIMALS; CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; DISEASE MODELS, ANIMAL; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE EXPRESSION REGULATION, VIRAL; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HOST-PATHOGEN INTERACTIONS; INFLUENZA A VIRUS; INFLUENZA A VIRUS, H5N1 SUBTYPE; INTERFERONS; MICE; ORTHOMYXOVIRIDAE INFECTIONS; RECEPTORS, DEATH DOMAIN; SIGNAL TRANSDUCTION; TRANSCRIPTOME;

EID: 84947242413     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep20269     Document Type: Erratum

References (32)

1. Alexander, D. J., Parsons, G. & Manvell, R. J. Experimental assessment of the pathogenicity of eight avian influenza A viruses of H5 subtype for chickens, turkeys, ducks and quail. Avian pathology : journal of the WVPA 15, 647-662 (1986).
2. Zhao, K. et al. Characterization of three H5N5 and one H5N8 highly pathogenic avian influenza viruses in China. Veterinary microbiology 163, 351-357 (2013).
3. Fan, S. et al. A novel highly pathogenic H5N8 avian influenza virus isolated from a wild duck in China. Influenza and other respiratory viruses 8, 646-653 (2014).
4. Wu, H. et al. Novel reassortant influenza A(H5N8) viruses in domestic ducks, eastern China. Emerging infectious diseases 20, 1315-1318 (2014).
5. Lee, Y. J. et al. Novel reassortant influenza A(H5N8) viruses, South Korea, 2014. Emerging infectious diseases 20, 1087-1089 (2014).
6. Kang, H. M. et al. Novel Reassortant Influenza A(H5N8) Viruses among Inoculated Domestic and Wild Ducks, South Korea, 2014. Emerging infectious diseases 21, 298-304 (2015).
7. Kim, Y.-I. et al. Pathobiological features of a novel, highly pathogenic avian influenza A(H5N8) virus. Emerging Microbes & Infections 3, e75 (2014).
8. Gavazzi, G. & Krause, K. H. Ageing and infection. The Lancet Infectious diseases 2, 659-666 (2002).
9. Mei, B., Ding, X., Xu, H. Z. & Wang, M. T. Global gene expression changes in human peripheral blood after H7N9 infection. Gene 551, 255-260 (2014).
10. Wang, Y., Lupiani, B., Reddy, S. M., Lamont, S. J. & Zhou, H. RNA-seq analysis revealed novel genes and signaling pathway associated with disease resistance to avian influenza virus infection in chickens. Poultry science 93, 485-493 (2014).
11. Ertl, R. & Klein, D. Transcriptional profiling of the host cell response to feline immunodeficiency virus infection. Virology journal 11, 52 (2014).
12. Jones, M. et al. RNA-seq analysis of host and viral gene expression highlights interaction between varicella zoster virus and keratinocyte differentiation. PLoS pathogens 10, e1003896 (2014).
13. Rossetto, C. C., Tarrant-Elorza, M., Verma, S., Purushothaman, P. & Pari, G. S. Regulation of viral and cellular gene expression by Kaposi's sarcoma-associated herpesvirus polyadenylated nuclear RNA. Journal of virology 87, 5540-5553 (2013).
14. Juranic Lisnic, V. et al. Dual analysis of the murine cytomegalovirus and host cell transcriptomes reveal new aspects of the virushost cell interface. PLoS pathogens 9, e1003611 (2013).
15. Gupta, P. et al. mda-7/IL-24: multifunctional cancer-specific apoptosis-inducing cytokine. Pharmacology & therapeutics 111, 596-628 (2006).
16. Tessarz, A. S. & Cerwenka, A. The TREM-1/DAP12 pathway. Immunology letters 116, 111-116 (2008).
17. Avian influenza: no clear indication of how H5N8 virus entered the EU. The Veterinary record 176, 59 (2015).
18. Jhung, M. A. & Nelson, D. I. Outbreaks of Avian Influenza A (H5N2), (H5N8), and (H5N1) Among Birds - United States, December 2014-January 2015. MMWR Morbidity and mortality weekly report 64, 111 (2015).
19. Ip, H. S. et al. Novel eurasian highly pathogenic avian influenza a h5 viruses in wild birds, washington, USA, 2014. Emerging infectious diseases 21, 886-890 (2015).
20. Harder, T. et al. Influenza A(H5N8) Virus Similar to Strain in Korea Causing Highly Pathogenic Avian Influenza in Germany. Emerging infectious diseases 21, 860-863 (2015).
21. Zou, W. et al. Insights into the increasing virulence of the swine-origin pandemic H1N1/2009 influenza virus. Scientific reports 3, 1601 (2013).
22. Vijayakumar, P. et al. Analysis of the crow lung transcriptome in response to infection with highly pathogenic H5N1 avian influenza virus. Gene 559, 77-85 (2015).
23. Josset, L., Tisoncik-Go, J. & Katze, M. G. Moving H5N1 studies into the era of systems biology. Virus research 178, 151-167 (2013).
24. Morrison, J. et al. H7N9 and other pathogenic avian influenza viruses elicit a three-pronged transcriptomic signature that is reminiscent of 1918 influenza virus and is associated with lethal outcome in mice. Journal of virology 88, 10556-10568 (2014).
25. Tchitchek, N. et al. Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice. BMC systems biology 7, 69 (2013).
26. Fornek, J. L. et al. A single-amino-acid substitution in a polymerase protein of an H5N1 influenza virus is associated with systemic infection and impaired T-cell activation in mice. Journal of virology 83, 11102-11115 (2009).
27. Weiss, I. D. et al. IFN-gamma treatment at early stages of influenza virus infection protects mice from death in a NK cell-dependent manner. Journal of interferon & cytokine research: the official journal of the International Society for Interferon and Cytokine Research 30, 439-449 (2010).
28. Flicek, P. et al. Ensembl 2013. Nucleic acids research 41, D48-55 (2013).
29. Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15-21 (2013).
30. Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature biotechnology 28, 511-515 (2010).
31. Anders, S., Pyl, P. T. & Huber, W. HTSeq - a Python framework to work with high-throughput sequencing data. Bioinformatics 31, 166-169 (2015).
32. Sun, J., Nishiyama, T., Shimizu, K. & Kadota, K. TCC: an R package for comparing tag count data with robust normalization strategies. BMC bioinformatics 14, 219 (2013).