메뉴 건너뛰기




Volumn 201, Issue 3, 2015, Pages 853-863

The double-reduction landscape in tetraploid potato as revealed by a high-density linkage map

Author keywords

Double reduction; Linkage mapping; Multivalents; Potato; Tetraploid

Indexed keywords

ARTICLE; FREQUENCY; GENETIC LINKAGE; GENOTYPE; LINKAGE ANALYSIS; NONHUMAN; PLANT CHROMOSOME; POTATO; PRIORITY JOURNAL; REDUCTION; SIMULATION; TETRAPLOIDY; CENTROMERE; CHROMOSOMAL MAPPING; CHROMOSOME PAIRING; COMPUTER SIMULATION; CYTOLOGY; GENETIC MARKER; GENETIC RECOMBINATION; GENETICS;

EID: 84946897300     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.115.181008     Document Type: Article
Times cited : (70)

References (47)
  • 1
    • 84904735461 scopus 로고    scopus 로고
    • Statistical comparison of the slopes of two regression lines: A tutorial
    • Andrade, J., and M. Estévez-Pérez, 2014 Statistical comparison of the slopes of two regression lines: a tutorial. Anal. Chim. Acta 838: 1-12.
    • (2014) Anal. Chim. Acta , vol.838 , pp. 1-12
    • Andrade, J.1    Estévez-Pérez, M.2
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and Y. Hochberg, 1995 Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Statist. Soc. B 57: 289-300.
    • (1995) J. R. Statist. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 8544249196 scopus 로고    scopus 로고
    • Interval mapping of quantitative trait loci for resistance to late blight [Phytophthora infestans (Mont.) de Bary], height and maturity in a tetraploid population of potato (Solanum tuberosum subsp. tuberosum)
    • Bradshaw, J. E., B. Pande, G. J. Bryan, C. A. Hackett, K. McLean et al., 2004 Interval mapping of quantitative trait loci for resistance to late blight [Phytophthora infestans (Mont.) de Bary], height and maturity in a tetraploid population of potato (Solanum tuberosum subsp. tuberosum). Genetics 168: 983-995.
    • (2004) Genetics , vol.168 , pp. 983-995
    • Bradshaw, J.E.1    Pande, B.2    Bryan, G.J.3    Hackett, C.A.4    McLean, K.5
  • 6
    • 37349012161 scopus 로고    scopus 로고
    • QTL mapping of yield, agronomic and quality traits in tetraploid potato (Solanum tuberosum subsp. tuberosum)
    • Bradshaw, J. E., C. A. Hackett, B. Pande, R. Waugh, and G. J. Bryan, 2008 QTL mapping of yield, agronomic and quality traits in tetraploid potato (Solanum tuberosum subsp. tuberosum). Theor. Appl. Genet. 116: 193-211.
    • (2008) Theor. Appl. Genet , vol.116 , pp. 193-211
    • Bradshaw, J.E.1    Hackett, C.A.2    Pande, B.3    Waugh, R.4    Bryan, G.J.5
  • 7
    • 0034612341 scopus 로고    scopus 로고
    • Selection-mutation balance in polysomic tetraploids: Impact of double reduction and gametophytic selection on the frequency and subchromosomal localization of deleterious mutations
    • Butruille, D., and L. Boiteux, 2000 Selection-mutation balance in polysomic tetraploids: impact of double reduction and gametophytic selection on the frequency and subchromosomal localization of deleterious mutations. Proc. Natl. Acad. Sci. USA 97: 6608-6613.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 6608-6613
    • Butruille, D.1    Boiteux, L.2
  • 8
    • 51149220102 scopus 로고
    • Nature of tetraploidy in cultivated European potatoes
    • Cadman, C. H., 1943 Nature of tetraploidy in cultivated European potatoes. Nature, Lond. 152: 103-04.
    • (1943) Nature, Lond , vol.152 , pp. 103-104
    • Cadman, C.H.1
  • 9
    • 0026218022 scopus 로고
    • A graphical representation of genetic and physical maps: The Marey map
    • Chakravarti, A., 1991 A graphical representation of genetic and physical maps: the Marey map. Genomics 11: 219-222.
    • (1991) Genomics , vol.11 , pp. 219-222
    • Chakravarti, A.1
  • 10
    • 84860442706 scopus 로고    scopus 로고
    • Integration of two diploid potato linkage maps with the potato genome sequence
    • Felcher, K. J., J. J. Coombs, A. N. Massa, C. N. Hansey, J. P. Hamilton et al., 2012 Integration of two diploid potato linkage maps with the potato genome sequence. PLoS One 7: e36347.
    • (2012) PLoS One , vol.7
    • Felcher, K.J.1    Coombs, J.J.2    Massa, A.N.3    Hansey, C.N.4    Hamilton, J.P.5
  • 12
    • 2142746427 scopus 로고    scopus 로고
    • TetraploidMap: Construction of a linkage map in autotetraploid species
    • Hackett, C., and Z. Luo, 2003 TetraploidMap: construction of a linkage map in autotetraploid species. J. Hered. 94: 358-359.
    • (2003) J. Hered , vol.94 , pp. 358-359
    • Hackett, C.1    Luo, Z.2
  • 13
    • 0035692256 scopus 로고    scopus 로고
    • Interval mapping of quantitative trait loci in autotetraploid species
    • Hackett, C., J. Bradshaw, and J. McNicol, 2001 Interval mapping of quantitative trait loci in autotetraploid species. Genetics 159: 1819-1832.
    • (2001) Genetics , vol.159 , pp. 1819-1832
    • Hackett, C.1    Bradshaw, J.2    McNicol, J.3
  • 14
    • 0038193473 scopus 로고    scopus 로고
    • Constructing linkage maps in autotetraploid species using simulated annealing
    • Hackett, C., B. Pande, and G. Bryan, 2003 Constructing linkage maps in autotetraploid species using simulated annealing. Theor. Appl. Genet. 106: 1107-1115.
    • (2003) Theor. Appl. Genet , vol.106 , pp. 1107-1115
    • Hackett, C.1    Pande, B.2    Bryan, G.3
  • 15
    • 84877979569 scopus 로고    scopus 로고
    • Linkage analysis and QTL mapping using SNP dosage data in a tetraploid potato mapping population
    • Hackett, C. A., K. McLean, and G. J. Bryan, 2013 Linkage analysis and QTL mapping using SNP dosage data in a tetraploid potato mapping population. PLoS One 8: e63939.
    • (2013) PLoS One , vol.8
    • Hackett, C.A.1    McLean, K.2    Bryan, G.J.3
  • 16
    • 0000084902 scopus 로고
    • Estimation of the coefficient of double reduction in the cultivated tetraploid potato
    • Haynes, K., and D. Douches, 1993 Estimation of the coefficient of double reduction in the cultivated tetraploid potato. Theor. Appl. Genet. 85: 857-862.
    • (1993) Theor. Appl. Genet , vol.85 , pp. 857-862
    • Haynes, K.1    Douches, D.2
  • 17
    • 0001211399 scopus 로고
    • Asynapsis and polyploidy in Schistocerca paranensis
    • John, B., and S. Henderson, 1962 Asynapsis and polyploidy in Schistocerca paranensis. Chromosoma 13: 111-147.
    • (1962) Chromosoma , vol.13 , pp. 111-147
    • John, B.1    Henderson, S.2
  • 18
    • 0028103161 scopus 로고
    • Meiosis in autopolyploid Crepis capillaris. II. Autotetraploids
    • Jones, G., and J. Vincent, 1994 Meiosis in autopolyploid Crepis capillaris. II. Autotetraploids. Genome 37: 497-505.
    • (1994) Genome , vol.37 , pp. 497-505
    • Jones, G.1    Vincent, J.2
  • 20
    • 84982339066 scopus 로고
    • Cytogenetic studies in Solanum, sect
    • Lamm, R., 1945 Cytogenetic studies in Solanum, sect. Tuberarium. Hereditas 31: 1-129.
    • (1945) Tuberarium. Hereditas , vol.31 , pp. 1-129
    • Lamm, R.1
  • 21
    • 79952161723 scopus 로고    scopus 로고
    • EM algorithm for mapping quantitative trait loci in multivalent tetraploids
    • Li, J., K. Das, G. Fu, C. Tong, Y. Li et al., 2011 EM algorithm for mapping quantitative trait loci in multivalent tetraploids. Int. J. Plant Genomics 2010: 216547.
    • (2011) Int. J. Plant Genomics , vol.2010 , pp. 216547
    • Li, J.1    Das, K.2    Fu, G.3    Tong, C.4    Li, Y.5
  • 23
    • 0035099904 scopus 로고    scopus 로고
    • Construction of a genetic linkage map in tetraploid species using molecular markers
    • Luo, Z., C. Hackett, J. Bradshaw, J. McNicol, and D. Milbourne, 2001 Construction of a genetic linkage map in tetraploid species using molecular markers. Genetics 157: 1369-1385.
    • (2001) Genetics , vol.157 , pp. 1369-1385
    • Luo, Z.1    Hackett, C.2    Bradshaw, J.3    McNicol, J.4    Milbourne, D.5
  • 24
    • 33646192912 scopus 로고    scopus 로고
    • Constructing genetic linkage maps under a tetrasomic model
    • Luo, Z. W., Z. Zhang, L. Leach, R. M. Zhang, J. E. Bradshaw et al., 2006 Constructing genetic linkage maps under a tetrasomic model. Genetics 172: 2635-2645.
    • (2006) Genetics , vol.172 , pp. 2635-2645
    • Luo, Z.W.1    Zhang, Z.2    Leach, L.3    Zhang, R.M.4    Bradshaw, J.E.5
  • 25
    • 0001325094 scopus 로고
    • Segregation and linkage in autotetraploids
    • Mather, K., 1936 Segregation and linkage in autotetraploids. J. Genet. 32: 287-314.
    • (1936) J. Genet , vol.32 , pp. 287-314
    • Mather, K.1
  • 26
    • 0031657515 scopus 로고    scopus 로고
    • Linkage analysis in tetraploid potato and association of markers with quantitative resistance to late blight (Phytophthora infestans)
    • Meyer, R., D. Milbourne, C. Hackett, J. Bradshaw, J. McNichol et al., 1998 Linkage analysis in tetraploid potato and association of markers with quantitative resistance to late blight (Phytophthora infestans). Mol. Genet. Genomics 259: 150-160.
    • (1998) Mol. Genet. Genomics , vol.259 , pp. 150-160
    • Meyer, R.1    Milbourne, D.2    Hackett, C.3    Bradshaw, J.4    McNichol, J.5
  • 28
    • 84869496221 scopus 로고    scopus 로고
    • Inheritance pattern of tetraploid Dioscorea alata and evidence of double reduction using microsatellite marker segregation analysis
    • Nemorin, A., K. Abraham, J. David, and G. Arnau, 2012 Inheritance pattern of tetraploid Dioscorea alata and evidence of double reduction using microsatellite marker segregation analysis. Mol. Breed. 30: 1657-1667.
    • (2012) Mol. Breed , vol.30 , pp. 1657-1667
    • Nemorin, A.1    Abraham, K.2    David, J.3    Arnau, G.4
  • 29
    • 79960422847 scopus 로고    scopus 로고
    • Genome sequence and analysis of the tuber crop potato
    • Potato Genome Sequencing Consortium (PGSC), 2011 Genome sequence and analysis of the tuber crop potato. Nature 475: 189-195.
    • (2011) Nature , vol.475 , pp. 189-195
    • Potato Genome Sequencing Consortium (PGSC)1
  • 30
    • 0034940003 scopus 로고    scopus 로고
    • Detecting and mapping repulsionphase linkage in polyploids with polysomic inheritance
    • Qu, L., and J. Hancock, 2001 Detecting and mapping repulsionphase linkage in polyploids with polysomic inheritance. Theor. Appl. Genet. 103: 136-143.
    • (2001) Theor. Appl. Genet , vol.103 , pp. 136-143
    • Qu, L.1    Hancock, J.2
  • 31
    • 0036909354 scopus 로고    scopus 로고
    • Neopolyploidy in flowering plants
    • Ramsey, J., and D. W. Schemske, 2002 Neopolyploidy in flowering plants. Annu. Rev. Ecol. Syst. 33: 589-639.
    • (2002) Annu. Rev. Ecol. Syst , vol.33 , pp. 589-639
    • Ramsey, J.1    Schemske, D.W.2
  • 33
    • 84889019837 scopus 로고    scopus 로고
    • Construction of reference chromosome-scale pseudomolecules for potato: Integrating the potato genome with genetic and physical maps
    • Sharma, S. K., D. Bolser, J. de Boer, M. Sønderkær, W. Amoros et al., 2013 Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps. G3 3: 2031-2047.
    • (2013) G3 , vol.3 , pp. 2031-2047
    • Sharma, S.K.1    Bolser, D.2    de Boer, J.3    Sønderkær, M.4    Amoros, W.5
  • 34
    • 51249093000 scopus 로고    scopus 로고
    • Segregation models for disomic, tetrasomic and intermediate inheritance in tetraploids: A general procedure applied to Rorippa (yellow cress) microsatellite data
    • Stift, M., C. Berenos, P. Kuperus, and P. H. van Tienderen, 2008 Segregation models for disomic, tetrasomic and intermediate inheritance in tetraploids: a general procedure applied to Rorippa (yellow cress) microsatellite data. Genetics 179: 2113-2123.
    • (2008) Genetics , vol.179 , pp. 2113-2123
    • Stift, M.1    Berenos, C.2    Kuperus, P.3    van Tienderen, P.H.4
  • 35
    • 0007665939 scopus 로고
    • The relationship between diploid and tetraploid recombination frequencies
    • Sved, J. A., 1964 The relationship between diploid and tetraploid recombination frequencies. Heredity 19: 585-596.
    • (1964) Heredity , vol.19 , pp. 585-596
    • Sved, J.A.1
  • 36
    • 0002957489 scopus 로고
    • Cytology and genetics of the potato (Solanum tuberosum) and related species
    • Swaminathan, M. S., and H. Howard, 1953 Cytology and genetics of the potato (Solanum tuberosum) and related species. Bib. Genet. 16: 1-192.
    • (1953) Bib. Genet , vol.16 , pp. 1-192
    • Swaminathan, M.S.1    Howard, H.2
  • 38
    • 0028191278 scopus 로고
    • Preferential pairing estimates from multivalent frequencies in tetraploids
    • Sybenga, J., 1994 Preferential pairing estimates from multivalent frequencies in tetraploids. Genome 37: 1045-1055.
    • (1994) Genome , vol.37 , pp. 1045-1055
    • Sybenga, J.1
  • 39
    • 84877268772 scopus 로고    scopus 로고
    • A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato
    • Uitdewilligen, J. G., A.-M. A. Wolters, B. B. D'hoop, T. J. Borm, R. G. Visser et al., 2013 A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato. PLoS One 8: e62355.
    • (2013) PLoS One , vol.8
    • Uitdewilligen, J.G.1    Wolters, A.-M.A.2    D'hoop, B.B.3    Borm, T.J.4    Visser, R.G.5
  • 41
    • 33745375367 scopus 로고    scopus 로고
    • Construction of a 10,000-marker ultradense genetic recombination map of potato: Providing a framework for accelerated gene isolation and a genomewide physical map
    • van O, H., S. Andrzejewski, E. Bakker, I. Barrena, G. J. Bryan et al., 2006 Construction of a 10,000-marker ultradense genetic recombination map of potato: Providing a framework for accelerated gene isolation and a genomewide physical map. Genetics 173: 1075-1087.
    • (2006) Genetics , vol.173 , pp. 1075-1087
    • van, O.H.1    Andrzejewski, S.2    Bakker, E.3    Barrena, I.4    Bryan, G.J.5
  • 42
    • 0036256695 scopus 로고    scopus 로고
    • MapChart: Software for the graphical presentation of linkage maps and QTLs
    • Voorrips, R., 2002 MapChart: software for the graphical presentation of linkage maps and QTLs. J. Hered. 93: 77-78.
    • (2002) J. Hered , vol.93 , pp. 77-78
    • Voorrips, R.1
  • 43
    • 84866525655 scopus 로고    scopus 로고
    • The simulation of meiosis in diploid and tetraploid organisms using various genetic models
    • Voorrips, R. E., and C. A. Maliepaard, 2012 The simulation of meiosis in diploid and tetraploid organisms using various genetic models. BMC Bioinformatics 13: 248.
    • (2012) BMC Bioinformatics , vol.13 , pp. 248
    • Voorrips, R.E.1    Maliepaard, C.A.2
  • 44
    • 79956025063 scopus 로고    scopus 로고
    • Genotype calling in tetraploid species from bi-allelic marker data using mixture models
    • Voorrips, R. E., G. Gort, and B. Vosman, 2011 Genotype calling in tetraploid species from bi-allelic marker data using mixture models. BMC Bioinformatics 12: 172.
    • (2011) BMC Bioinformatics , vol.12 , pp. 172
    • Voorrips, R.E.1    Gort, G.2    Vosman, B.3
  • 45
    • 84947019054 scopus 로고    scopus 로고
    • Development and analysis of a 20K SNP array for potato (Solanum tuberosum): An insight into the breeding history
    • Vos, P. G., J. G. A. M. L. Uitdewilligen, R. E. Voorrips, R. G. F. Visser, and H. J. van Eck, 2015 Development and analysis of a 20K SNP array for potato (Solanum tuberosum): an insight into the breeding history. Theor. Appl. Genet. .DOI:10. 1007/ s00122- 015-2593-y
    • (2015) Theor. Appl. Genet
    • Vos, P.G.1    Uitdewilligen, J.G.A.M.L.2    Voorrips, R.E.3    Visser, R.G.F.4    van Eck, H.J.5
  • 46
    • 4544271944 scopus 로고    scopus 로고
    • A mixed polyploid model for linkage analysis in outcrossing tetraploids using a pseudotest backcross design
    • Wu, R., C.-X. Ma, and G. Casella, 2004 A mixed polyploid model for linkage analysis in outcrossing tetraploids using a pseudotest backcross design. J. Comput. Biol. 11: 562-580.
    • (2004) J. Comput. Biol , vol.11 , pp. 562-580
    • Wu, R.1    Ma, C.-X.2    Casella, G.3
  • 47
    • 84881131997 scopus 로고    scopus 로고
    • Meiosis in polyploid plants
    • edited by P. S. Soltis and D. E. Soltis. Springer, Berlin
    • Zielinski, M.-L., and O. M. Scheid, 2012 Meiosis in polyploid plants, pp. 33-55 in Polyploidy and Genome Evolution, edited by P. S. Soltis and D. E. Soltis. Springer, Berlin.
    • (2012) Polyploidy and Genome Evolution , pp. 33-55
    • Zielinski, M.-L.1    Scheid, O.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.