Linkage analysis in tetraploid potato and association of markers with quantitative resistance to late blight (Phytophthora infestans)

Molecular and General Genetics

Volumn 259, Issue 2, 1998, Pages 150-160

  Meyer, R C ^a   Milbourne, D ^a   Hackett, C A ^b   Bradshaw, J E ^a   McNichol, J W ^b   Waugh, R ^a  

^a SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

^b BIOMATHEMATICS AND STATISTICS SCOTLAND   (United Kingdom)

Author keywords

AFLP; Linkage map; Solanum tuberosum

Indexed keywords

DNA MARKER;

AGRICULTURE; ALLELE; ARTICLE; GENETIC LINKAGE; GENETIC POLYMORPHISM; HOST RESISTANCE; INFESTATION; MARKER GENE; NONHUMAN; OOMYCETES; POTATO; PRIORITY JOURNAL; TETRAPLOIDY;

CHROMOSOME MAPPING; GENETIC MARKERS; PHYTOPHTHORA; PLANT DISEASES; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; POLYPLOIDY; QUANTITATIVE TRAIT, HERITABLE; SEQUENCE TAGGED SITES; SOLANUM TUBEROSUM;

FUNGI; OOMYCETES; PHYTOPHTHORA INFESTANS; SOLANUM TUBEROSUM; TUBEROSUM;

EID: 0031657515     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380050800     Document Type: Article

References (37)

1. Ballvora A, Hesselbach J, Niewohner J, Leister D, Salamini F, Gebhardt C (1995) Marker enrichment and high resolution map of the segment of potato chromosome VII harbouring the nematode resistance gene Gro1. Mol Gen Genet 249:82-90
2. Bonierbale MW, Plaisted RL, Tanksley SD (1988) RFLP maps based on a common set of clones reveal modes of chromosomal evolution in potato and tomato. Genetics 120:1095-1103
3. Bonierbale MW, Plaisted RL, O. Pineda O, Tanksley SD (1994) QTL analysis of trichome-mediated insect resistance in potato. Theor Appl Genet 87: 973-987
4. Bradshaw JE, Stewart HE, Wastie RL, Dale MFB, Phillips MS (1995) Use of seedling progeny tests for genetical studies as part of a potato (Solanum tuberosum subsp. tuberosum) breeding programme. Theor Appl Genet 90:899-905
5. Bradshaw JE, Hackett CA, McNicol JW, Meyer RC, Milbourne D, Phillips MS, Waugh R (1998) Identification of AFLP markers associated with quantitative resistance to Globodera pullida (Stone) in tetraploid potato (Solanum tuberosum subsp. tuberosum) with a view to marker assisted selection. Theor Appl Genet, in press
6. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963-971
7. Cruickshank G, Stewart HE, Wastie RL (1982) An illustrated assessment key for foliage blight of potatoes. Potato Res 25:213-214
8. Da Silva J (1993) A methodology for genome mapping of autopolyploids and its application to sugarcane (Saccharum spp). Ph. D. dissertation, Cornell University, Ithaca, New York
9. Da Silva J, Sorrells ME, Burnquist WL, Tanksley SD (1993) RFLP linkage map and genome analysis of Saccharum spontaneum L. Genome 36:782-791
10. Demecke T, Kawchuk LH, Lynch DR (1993) Identification of potato cultivars and clonal variants by random amplified polymorphic DNA analysis. Amer Potato J 70:561-570
11. Gebhardt C, Ritter E, Barone A, Debener T, Walkemeier B, Schachtschabel U, Kaufmann H, Thompson RD, Bonierbale MW, Ganal MW, Tanksley SD, Salamini F (1991) RFLP maps of potato and their alignment with the homoeologous tomato genome. Theor Appl Genet 83:49-57
12. Gorg R, Schachtschabel U, Ritter E, Salamini F, Gebhardt C (1992) Discrimination among 136 tetraploid potato varieties by fingerprints using highly polymorphic DNA markers. Crop Sci 32:815-819
13. Hackett CA, Bradshaw JE, Meyer RC, McNicol JW, Milbourne D, Waugh R (1998) Linkage analysis in tetraploid potatoes: a simulation study. Genet Res, in press
14. Jacobs JME, Van Eck HJ, Arens P, Verkerk-Bakker B, te Lintel Hekkert B, Bastiaanssen HJM, El-Kharbotly A, Pereira A, Jacobsen E, Stiekema WJ (1995) A genetic map of potato (Solanum tuberosum) integrating molecular markers, including transposons, and classical markers. Theor Appl Genet 91:289-300
15. Leister D, Ballvora A, Salamini F, Gebhardt C (1996) A PCR based approached for isolating pathogen resistance genes from potato with potential for wide application in plants. Nature Genet 14:421-429
16. Leonards-Schippers C, Gieffers W, Schäfer-Pregl R, Ritter E, Knapp SJ, Salamini F, Gebhardt C (1994) Quantitative resistance to Phytophthora infestans in potato: a case study for QTL mapping in an allogamous plant species. Genetics 137:67-77
17. Lincoln SE, Daly MJ, Lander ES (1991) PRIMER: a computer program for automatically selecting PCR primers. Whitehead Institute for Biomedical Research, Cambridge, Mass.
18. Mann HB, Whitney DR (1947) On a test of whether one of two random variables is stochastically larger than the other. Ann Math Stat 18:50-60
19. Meyer R, Salamini F, Uhrig H (1993) Isolation and characterization of potato diploid clones generating a high frequency of monohaploid or homozygous diploid androgenetic plants. Theor Appl Genet 85:905-912
20. Milbourne D, Meyer RC, Bradshaw JE, Baird E, Bonar N, Provan J, Powell W, Waugh R (1997) Comparison of PCR-based marker systems for the analysis of genetic relationships in cultivated potato. Mol Breed 3:127-136
21. Milbourne D, Meyer RC, Collins AJ, Ramsay LD, Gebhardt C, Waugh R (1998) Isolation, characterisation and mapping of simple sequence repeat loci in potato. Mol Gen Genet, in press
22. Paterson AH, Lander ES, Hewitt JD, Peterson S, Lincoln SE, Tanksley SD (1988) Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms. Nature 335:721-726
23. Payne RW, Lane PW, Digby PGN, Harding SA, Leech PK, Morgan GW, Todd AD, Thompson R, Tunnicliffe Wilson G, Welham SJ, White RP (1993) Genstat 5 Release 3 Reference Manual. Oxford University Press, Oxford, UK.
24. Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, Rafalski A (1996) The utility of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol Breed 2:225-238
25. Ritter E, Debener T, Barone A, Salamini F, Gebhardt C (1991) RFLP mapping on potato chromosomes of two genes controlling extreme resistance to potato virus X (PVX). Mol Gen Genet 227:81-85
26. Rouppe van der Voort JNAM, van Zandvoort P, van Eck HJ, Folkertsma RT, Hutten RCB, Draaistra J, Gommers FJ, Jacobsen E, Helder J, Bakker J (1997) Use of allele specificity of comigrating AFLP markers to align genetic maps from different potato genotypes. Mol Gen Genet 255:438-447
27. Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location and population dynamics. Proc Natl Acad Sci USA 81:8014-8018
28. Sobral BWS, Honeycutt RJ (1993) High-output genetic mapping in polyploids using PCR-generated markers. Theor Appl Genet 86:105-112
29. Stam P, van Ooijen JW (1995) JoinMap version 2.0: software for the calculation of genetic linkage maps. CPRO-DLO, Wageningen, The Netherlands
30. Stewart HE, Flavelle PH, McCalmont DC, Wastie RL (1983) Correlation between glasshouse and field-tests for resistance to foliage blight caused by Phytophthora infestans. Potato Res 26:41-48
31. Van Eck HJ, Jacobs JME, van Dijk J, Stiekema WJ, Jacobsen E (1993) Identification and mapping of three flower colour loci of potato (S. tuberosum L.) by RFLP analysis. Theor Appl Genet 86:295-300
32. Van Eck HJ, Rouppe van der Voort J, Draaistra J, van Zandvoort P, van Enckevort E, Segers B, Peleman J, Jacobsen E, Helder J, Bakker J (1995) The inheritance and chromosomal localization of AFLP markers in a non-inbred potato offspring. Mol Breed 1:397-410
33. Van Oijen JW (1994) Drawmap: a computer program for drawing genetic linkage maps. J Hered 85:66
34. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
35. Waugh R, McLean K, Flavell AJ, Pearce SR, Kumar A, Thomas WBT, Powell W (1997) Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP). Mol Gen Genet 253:687-694
36. Wu KK, Burnquist W, Sorrells ME, Tew TL, Moore PH, Tanksley SD (1992) The detection and estimation of linkage in polyploids using single-dose restriction fragments. Theor Appl Genet 83:294-300
37. Yu KF, Pauls KP (1993) Segregation of random amplified polymorphic DNA markers and strategies for molecular mapping in tetraploid alfalfa. Genome 36:844-851