-
1
-
-
84946568028
-
-
Accessed March 2015
-
Annotation Guide, Human Phenotype Ontology. Accessed March 2015. http://www.human-phenotype-ontology.org/contao/index.php/annotation-guide.html
-
Annotation Guide
-
-
-
2
-
-
40649084822
-
Visual software tools for bioinformatics
-
Arndt, T. (2008). Visual software tools for bioinformatics. JVLC, 19(2), 291-301.
-
(2008)
JVLC
, vol.19
, Issue.2
, pp. 291-301
-
-
Arndt, T.1
-
3
-
-
0027324569
-
Hypothesis generation and the coordination of theory and evidence in novice diagnostic reasoning
-
Arocha, J. F., Patel, V. L., & Patel, Y. C. (1993). Hypothesis generation and the coordination of theory and evidence in novice diagnostic reasoning. Medical Decision Making, 13(3), 198-211.
-
(1993)
Medical Decision Making
, vol.13
, Issue.3
, pp. 198-211
-
-
Arocha, J.F.1
Patel, V.L.2
Patel, Y.C.3
-
4
-
-
85053853080
-
Phenotyping: Targeting genotype's rich cousin for diagnosis
-
Baynam, G., Walters, M., Claes, P.,... & Goldblatt, J. (2014). Phenotyping: Targeting genotype's rich cousin for diagnosis. Journal of paediatrics and child health.
-
(2014)
Journal of Paediatrics and Child Health
-
-
Baynam, G.1
Walters, M.2
Claes, P.3
Goldblatt, J.4
-
5
-
-
84946409584
-
Chapter 15: Personalized disease phenotypes from massive OMICs data
-
Med. Info. Sci. Reference
-
Binder, H., Hopp, L., Lembcke, K. & Wirth, H. (2014) Chapter 15: Personalized disease phenotypes from massive OMICs data. Big Data Analytics in Bioinformatics and Healthcare. Med. Info. Sci. Reference.
-
(2014)
Big Data Analytics in Bioinformatics and Healthcare
-
-
Binder, H.1
Hopp, L.2
Lembcke, K.3
Wirth, H.4
-
6
-
-
84855780787
-
Interactive visual comparison of multiple trees
-
Bremm, S., von Landesberger, T., Heß, M., Schreck, T., Weil, P., & Hamacherk, K. (2011). Interactive visual comparison of multiple trees. In Proc. VAST 2011 IEEE. 31-40.
-
(2011)
Proc. VAST 2011 IEEE
, pp. 31-40
-
-
Bremm, S.1
Von Landesberger, T.2
Heß, M.3
Schreck, T.4
Weil, P.5
Hamacherk, K.6
-
7
-
-
0344118751
-
Data mining on temporal data: A visual approach and its clinical application to hemodialysis
-
Chittaro, L., Combi, C., & Trapasso, G. (2003). Data mining on temporal data: a visual approach and its clinical application to hemodialysis. JVLC, 14(6), 591-620.
-
(2003)
JVLC
, vol.14
, Issue.6
, pp. 591-620
-
-
Chittaro, L.1
Combi, C.2
Trapasso, G.3
-
9
-
-
77952822074
-
PheWAS: Demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations
-
Denny, J. C., Ritchie, M. D., Basford., ... & Crawford, D. C. (2010). PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations. Bioinformatics, 26(9), 1205-1210.
-
(2010)
Bioinformatics
, vol.26
, Issue.9
, pp. 1205-1210
-
-
Denny, J.C.1
Ritchie, M.D.2
Basford3
Crawford, D.C.4
-
11
-
-
0002366680
-
LCS: The role and development of medical knowledge in diagnostic expertise
-
Feltovich, P. J., Johnson, P. E., Moller, J. H., & Swanson, D. B. (1984). LCS: The role and development of medical knowledge in diagnostic expertise. Readings in medical artificial intelligence, 275-319.
-
(1984)
Readings in Medical Artificial Intelligence
, pp. 275-319
-
-
Feltovich, P.J.1
Johnson, P.E.2
Moller, J.H.3
Swanson, D.B.4
-
12
-
-
84886647648
-
Variant view: Visualizing sequence variants in their context
-
Ferstay, J. A., Nielsen, C. B., & Munzner, T. (2013). Variant view: Visualizing sequence variants in their context. TVCG, 19(12), 2546-2555.
-
(2013)
TVCG
, vol.19
, Issue.12
, pp. 2546-2555
-
-
Ferstay, J.A.1
Nielsen, C.B.2
Munzner, T.3
-
13
-
-
84864424447
-
Savant Genome Browser 2: Visualization and analysis for population-scale genomics
-
Fiume, M., Smith, E. J., Brook, A.,... & Brudno, M. (2012). Savant Genome Browser 2: visualization and analysis for population-scale genomics. Nucleic acids research, 40(1), 615-621.
-
(2012)
Nucleic Acids Research
, vol.40
, Issue.1
, pp. 615-621
-
-
Fiume, M.1
Smith, E.J.2
Brook, A.3
Brudno, M.4
-
14
-
-
84946584396
-
-
Accessed March 2015
-
FORGE Canada Consortium. Accessed March 2015. http://www.genomebc.ca/research-programs/projects/health/finding-of-rare-disease-genes-in-canada-forge-canada/
-
-
-
-
15
-
-
84880508099
-
PhenoTips: Patient phenotyping software for clinical and research use
-
Girdea, M., Dumitriu, S., Fiume, M.,... & Brudno, M. (2013). PhenoTips: patient phenotyping software for clinical and research use. Human mutation, 34(8), 1057-1065.
-
(2013)
Human Mutation
, vol.34
, Issue.8
, pp. 1057-1065
-
-
Girdea, M.1
Dumitriu, S.2
Fiume, M.3
Brudno, M.4
-
16
-
-
0038757904
-
The clinical reasoning characteristics of diagnostic experts
-
Groves, M., O'Rourke, P., & Alexander, H. (2003). The clinical reasoning characteristics of diagnostic experts. Medical teacher, 25(3), 308-313.
-
(2003)
Medical Teacher
, vol.25
, Issue.3
, pp. 308-313
-
-
Groves, M.1
O'Rourke, P.2
Alexander, H.3
-
17
-
-
78649527910
-
A survey of multiple tree visualisation
-
Graham, M., & Kennedy, J. (2010). A survey of multiple tree visualisation. Information Visualization, 9(4), 235-252.
-
(2010)
Information Visualization
, vol.9
, Issue.4
, pp. 235-252
-
-
Graham, M.1
Kennedy, J.2
-
18
-
-
79955681592
-
CareCruiser: Exploring and visualizing plans, events, and effects interactively
-
Gschwandtner, T., Aigner, W., Kaiser, K., Miksch, S., & Seyfang, A. (2011). CareCruiser: exploring and visualizing plans, events, and effects interactively. In Proc. PacificVis, 43-50.
-
(2011)
Proc. PacificVis
, pp. 43-50
-
-
Gschwandtner, T.1
Aigner, W.2
Kaiser, K.3
Miksch, S.4
Seyfang, A.5
-
19
-
-
84886687281
-
Visualizing change over time using dynamic hierarchies: TreeVersity2 and the StemView
-
Guerra-Gomez, J., Pack, M. L., Plaisant, C., & Shneiderman, B. (2013). Visualizing change over time using dynamic hierarchies: TreeVersity2 and the StemView. TVCG, 19(12), 2566-2575.
-
(2013)
TVCG
, vol.19
, Issue.12
, pp. 2566-2575
-
-
Guerra-Gomez, J.1
Pack, M.L.2
Plaisant, C.3
Shneiderman, B.4
-
20
-
-
0041813144
-
ColorBrewer. org: An online tool for selecting colour schemes for maps
-
Harrower, M., & Brewer, C. A. (2003). ColorBrewer. org: an online tool for selecting colour schemes for maps. The Cartographic Journal, 40(1), 27-37.
-
(2003)
The Cartographic Journal
, vol.40
, Issue.1
, pp. 27-37
-
-
Harrower, M.1
Brewer, C.A.2
-
21
-
-
84864360759
-
Next-generation sequencing demands next-generation phenotyping
-
Hennekam, R., & Biesecker, L. G. (2012). Next-generation sequencing demands next-generation phenotyping. Human mutation, 33(5), 884-886.
-
(2012)
Human Mutation
, vol.33
, Issue.5
, pp. 884-886
-
-
Hennekam, R.1
Biesecker, L.G.2
-
23
-
-
78549246207
-
Phenomics: The next challenge
-
Houle, D., Govindaraju, D. R., & Omholt, S. (2010). Phenomics: the next challenge. Nature Reviews Genetics, 11(12), 855-866.
-
(2010)
Nature Reviews Genetics
, vol.11
, Issue.12
, pp. 855-866
-
-
Houle, D.1
Govindaraju, D.R.2
Omholt, S.3
-
26
-
-
84855786714
-
Characterizing the intelligence analysis process: Informing visual analytics design through a longitudinal field study
-
Kang, Y. A., & Stasko, J. (2011). Characterizing the intelligence analysis process: Informing visual analytics design through a longitudinal field study. In Proc VAST, 21-30.
-
(2011)
Proc VAST
, pp. 21-30
-
-
Kang, Y.A.1
Stasko, J.2
-
27
-
-
36048959880
-
Ontology visualization methods - A survey
-
Katifori, A., Halatsis, C., Lepouras, G., Vassilakis, C., & Giannopoulou, E. (2007). Ontology visualization methods - a survey. CSUR, 39(4), 10.
-
(2007)
CSUR
, vol.39
, Issue.4
, pp. 10
-
-
Katifori, A.1
Halatsis, C.2
Lepouras, G.3
Vassilakis, C.4
Giannopoulou, E.5
-
28
-
-
50549094540
-
-
Springer
-
Keim, D., Andrienko, G., Fekete, J. D., Görg, C., Kohlhammer, J., & Melançon, G. (2008). Visual analytics: Definition, process, and challenges, 154-175. Springer.
-
(2008)
Visual Analytics: Definition, Process, and Challenges
, pp. 154-175
-
-
Keim, D.1
Andrienko, G.2
Fekete, J.D.3
Görg, C.4
Kohlhammer, J.5
Melançon, G.6
-
29
-
-
70350474767
-
Clinical diagnostics in human genetics with semantic similarity searches in ontologies
-
Köhler, S., Schulz, M. H., Krawitz, P.,... & Robinson, P. N. (2009). Clinical diagnostics in human genetics with semantic similarity searches in ontologies. Am J Human Genetics, 85(4), 457-464.
-
(2009)
Am J Human Genetics
, vol.85
, Issue.4
, pp. 457-464
-
-
Köhler, S.1
Schulz, M.H.2
Krawitz, P.3
Robinson, P.N.4
-
30
-
-
84908334056
-
The Human Phenotype Ontology project
-
Köhler, S., Doelken, S. C., Mungall,, ... & Robinson, P. N. (2013). The Human Phenotype Ontology project. Nucleic acids research.
-
(2013)
Nucleic Acids Research
-
-
Köhler, S.1
Doelken, S.C.2
Mungall3
Robinson, P.N.4
-
31
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
Krzywinski, M., Schein, J., Birol, I., ... & Marra, M. A. (2009). Circos: an information aesthetic for comparative genomics. Genome research, 19(9), 1639-1645.
-
(2009)
Genome Research
, vol.19
, Issue.9
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Marra, M.A.4
-
32
-
-
77954407941
-
Phenomics: Expanding the role of clinical evaluation in genomic studies
-
Lanktree, M. B., Hassell, R. G., Lahiry, P., & Hegele, R. A. (2010). Phenomics: expanding the role of clinical evaluation in genomic studies. Journal of Investigative Medicine, 58(5), 700-706.
-
(2010)
Journal of Investigative Medicine
, vol.58
, Issue.5
, pp. 700-706
-
-
Lanktree, M.B.1
Hassell, R.G.2
Lahiry, P.3
Hegele, R.A.4
-
33
-
-
54949141110
-
Distributed cognition as a theoretical framework for information visualization
-
Liu, Z., Nersessian, N. J., & Stasko, J. T. (2008). Distributed cognition as a theoretical framework for information visualization. TVCG, 14(6),1173-1180.
-
(2008)
TVCG
, vol.14
, Issue.6
, pp. 1173-1180
-
-
Liu, Z.1
Nersessian, N.J.2
Stasko, J.T.3
-
34
-
-
84946584397
-
-
Accessed March 2015
-
London Medical Databases. Accessed March 2015. http://www.lmdatabases.com
-
-
-
-
35
-
-
33846080223
-
Computational approaches to phenotyping: High-throughput phenomics
-
Lussier, Y. A., & Liu, Y. (2007). Computational approaches to phenotyping: high-throughput phenomics. In Proc. Am Thoracic Society, 4(1), 18-25.
-
(2007)
Proc. Am Thoracic Society
, vol.4
, Issue.1
, pp. 18-25
-
-
Lussier, Y.A.1
Liu, Y.2
-
36
-
-
70350655606
-
MizBee: A multiscale synteny browser
-
Meyer, M., Munzner, T., & Pfister, H. (2009). MizBee: a multiscale synteny browser. TVCG, 15(6), 897-904.
-
(2009)
TVCG
, vol.15
, Issue.6
, pp. 897-904
-
-
Meyer, M.1
Munzner, T.2
Pfister, H.3
-
37
-
-
14344251246
-
TreeJuxtaposer: Scalable tree comparison using Focus+ Context with guaranteed visibility
-
Munzner, T., Guimbretière, F., Tasiran, S., Zhang, L., & Zhou, Y. (2003). TreeJuxtaposer: scalable tree comparison using Focus+ Context with guaranteed visibility. ACM TOG, 22(3), 453-462.
-
(2003)
ACM TOG
, vol.22
, Issue.3
, pp. 453-462
-
-
Munzner, T.1
Guimbretière, F.2
Tasiran, S.3
Zhang, L.4
Zhou, Y.5
-
38
-
-
77649253051
-
Visualizing genomes: Techniques and challenges
-
Nielsen, C. B., Cantor, M., Dubchak, I.,...& Wang, T. (2010). Visualizing genomes: techniques and challenges. Nature methods, 7, S5-S15.
-
(2010)
Nature Methods
, vol.7
, pp. S5-S15
-
-
Nielsen, C.B.1
Cantor, M.2
Dubchak, I.3
Wang, T.4
-
39
-
-
70350655607
-
ABySS-Explorer: Visualizing genome sequence assemblies
-
Nielsen, C. B., Jackman, S. D., Birol, I., & Jones, S. J. (2009). ABySS-Explorer: visualizing genome sequence assemblies. TVCG, 15(6), 881-888.
-
(2009)
TVCG
, vol.15
, Issue.6
, pp. 881-888
-
-
Nielsen, C.B.1
Jackman, S.D.2
Birol, I.3
Jones, S.J.4
-
40
-
-
84946584398
-
-
Accessed March 2015
-
Online Mendelian Inheritance in Man (OMIM). Accessed March 2015. http://www.omim.org/
-
-
-
-
41
-
-
84861958505
-
Visually integrating and exploring high throughput Phenome-Wide Association Study results using PheWAS-View
-
Pendergrass, S. A., Dudek, S. M., Crawford, D. C., & Ritchie, M. D. (2012). Visually integrating and exploring high throughput Phenome-Wide Association Study results using PheWAS-View. BioData mining, 5(5).
-
(2012)
BioData Mining
, vol.5
, Issue.5
-
-
Pendergrass, S.A.1
Dudek, S.M.2
Crawford, D.C.3
Ritchie, M.D.4
-
42
-
-
33745850694
-
The sensemaking process and leverage points for analyst technology as identified through cognitive task analysis
-
Pirolli, P., & Card, S. (2005). The sensemaking process and leverage points for analyst technology as identified through cognitive task analysis. In Proc Intl Conf on Intelligence Analysis, 5, 2-4.
-
(2005)
Proc Intl Conf on Intelligence Analysis
, vol.5
, pp. 2-4
-
-
Pirolli, P.1
Card, S.2
-
43
-
-
0032254512
-
LifeLines: Using visualization to enhance navigation and analysis of patient records
-
Plaisant, C., Mushlin, R., Snyder, A., Li, J., Heller, D., & Shneiderman, B. (1998). LifeLines: using visualization to enhance navigation and analysis of patient records. In Proc. AMIA, 76.
-
(1998)
Proc. AMIA
, vol.76
-
-
Plaisant, C.1
Mushlin, R.2
Snyder, A.3
Li, J.4
Heller, D.5
Shneiderman, B.6
-
44
-
-
84946584399
-
-
Accessed March 2015
-
Pictures of Standard Syndromes and Undiagnosed Malformations (POSSUM). Accessed March 2015. http://www.possum.net.au/
-
-
-
-
45
-
-
84864358886
-
Representation of rare diseases in health information systems: The Orphanet approach to serve a wide range of end users
-
Rath, A., Olry, A., Dhombres,..., & Ayme, S. (2012). Representation of rare diseases in health information systems: the Orphanet approach to serve a wide range of end users. Human mutation, 33(5), 803-808.
-
(2012)
Human Mutation
, vol.33
, Issue.5
, pp. 803-808
-
-
Rath, A.1
Olry, A.2
Dhombres3
Ayme, S.4
-
46
-
-
84877897011
-
Interactive information visualization to explore and query electronic health records
-
Rind, A., Wang, T. D., Aigner, W.,... & Shneiderman, B. (2011). Interactive information visualization to explore and query electronic health records. Foundations and Trends in Human-Computer Interaction, 5(3), 207-298.
-
(2011)
Foundations and Trends in Human-Computer Interaction
, vol.5
, Issue.3
, pp. 207-298
-
-
Rind, A.1
Wang, T.D.2
Aigner, W.3
Shneiderman, B.4
-
47
-
-
82155197304
-
-
Springer
-
Rind, A., Aigner, W., Miksch, S., Wiltner, S., Pohl, M., Turic, T., & Drexler, F. (2011). Visual exploration of time-oriented patient data for chronic diseases: Design study and evaluation, 301-320. Springer.
-
(2011)
Visual Exploration of Time-oriented Patient Data for Chronic Diseases: Design Study and Evaluation
, pp. 301-320
-
-
Rind, A.1
Aigner, W.2
Miksch, S.3
Wiltner, S.4
Pohl, M.5
Turic, T.6
Drexler, F.7
-
48
-
-
84998075602
-
Animated visualization of multiple intersecting hierarchies
-
Robertson, G., Cameron, K., Czerwinski, M., & Robbins, D. (2002). Animated visualization of multiple intersecting hierarchies. Information Visualization, 1(1), 50-65.
-
(2002)
Information Visualization
, vol.1
, Issue.1
, pp. 50-65
-
-
Robertson, G.1
Cameron, K.2
Czerwinski, M.3
Robbins, D.4
-
49
-
-
84954358609
-
The Human Phenotype Ontology: A tool for annotating and analyzing human hereditary disease
-
Robinson, P. N., Köhler, S., Bauer, S., Seelow, D., Horn, D., & Mundlos, S. (2008). The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease. Am J Hum Genetics, 83(5), 610-615.
-
(2008)
Am J Hum Genetics
, vol.83
, Issue.5
, pp. 610-615
-
-
Robinson, P.N.1
Köhler, S.2
Bauer, S.3
Seelow, D.4
Horn, D.5
Mundlos, S.6
-
50
-
-
77953936166
-
The human phenotype ontology
-
Robinson, P. N., & Mundlos, S. (2010). The human phenotype ontology. Clinical genetics, 77(6), 525-534.
-
(2010)
Clinical Genetics
, vol.77
, Issue.6
, pp. 525-534
-
-
Robinson, P.N.1
Mundlos, S.2
-
51
-
-
84864332063
-
Deep phenotyping for precision medicine
-
Robinson, Peter N. (2012). Deep phenotyping for precision medicine. Human mutation, 33(5), 777-780.
-
(2012)
Human Mutation
, vol.33
, Issue.5
, pp. 777-780
-
-
Robinson, P.N.1
-
52
-
-
84858731684
-
Arena3D: Visualizing time-driven phenotypic differences in biological systems
-
Secrier, M., Pavlopoulos, G. A., Aerts, J. & Schneider, R. (2012). Arena3D: visualizing time-driven phenotypic differences in biological systems. Bioinformatics 13(45).
-
(2012)
Bioinformatics
, vol.13
, Issue.45
-
-
Secrier, M.1
Pavlopoulos, G.A.2
Aerts, J.3
Schneider, R.4
-
53
-
-
84877906841
-
Improving healthcare with interactive visualization
-
Shneiderman, B., Plaisant, C., & Hesse, B. W. (2013). Improving healthcare with interactive visualization. Computer, (5), 58-66.
-
(2013)
Computer
, Issue.5
, pp. 58-66
-
-
Shneiderman, B.1
Plaisant, C.2
Hesse, B.W.3
-
54
-
-
0034499211
-
Focus+ context display and navigation techniques for enhancing radial, space-filling hierarchy visualizations
-
Stasko, J., & Zhang, E. (2000). Focus+ context display and navigation techniques for enhancing radial, space-filling hierarchy visualizations. In Proc. Infovis, 57-65.
-
(2000)
Proc. Infovis
, pp. 57-65
-
-
Stasko, J.1
Zhang, E.2
-
55
-
-
35948936372
-
Visualizing changes of hierarchical data using treemaps
-
Tu, Y. & Shen, H. W. (2007) Visualizing changes of hierarchical data using treemaps. TVCG, 13, 1286-1293.
-
(2007)
TVCG
, vol.13
, pp. 1286-1293
-
-
Tu, Y.1
Shen, H.W.2
-
56
-
-
78649541417
-
Using multilevel call matrices in large software projects
-
van Ham, F. (2003) Using multilevel call matrices in large software projects. In Proc. Infovis, 227-232.
-
(2003)
Proc. Infovis
, pp. 227-232
-
-
Van Ham, F.1
-
57
-
-
57649200404
-
Aligning temporal data by sentinel events: Discovering patterns in electronic health records
-
Wang, T. D., Plaisant, C., Quinn, A. J., Stanchak, R., Murphy, S., & Shneiderman, B. (2008). Aligning temporal data by sentinel events: discovering patterns in electronic health records. In Proc. CHI, 457-466.
-
(2008)
Proc. CHI
, pp. 457-466
-
-
Wang, T.D.1
Plaisant, C.2
Quinn, A.J.3
Stanchak, R.4
Murphy, S.5
Shneiderman, B.6
-
58
-
-
85046733695
-
Determinants of diagnostic hypothesis generation: Effects of information, base rates, and experience
-
Weber, E. U., Böckenholt, U., Hilton, D. J., & Wallace, B. (1993). Determinants of diagnostic hypothesis generation: effects of information, base rates, and experience. J of Exp Psych, 19(5), 1151.
-
(1993)
J of Exp Psych
, vol.19
, Issue.5
, pp. 1151
-
-
Weber, E.U.1
Böckenholt, U.2
Hilton, D.J.3
Wallace, B.4
-
59
-
-
79958158585
-
LifeFlow: Visualizing an overview of event sequences
-
Wongsuphasawat, K., Guerra Gómez, J. A., Plaisant, C., Wang, T. D., Taieb-Maimon, M., & Shneiderman, B. (2011). LifeFlow: visualizing an overview of event sequences. In Proc CHI, 1747-1756.
-
(2011)
Proc CHI
, pp. 1747-1756
-
-
Wongsuphasawat, K.1
Guerra Gómez, J.A.2
Plaisant, C.3
Wang, T.D.4
Taieb-Maimon, M.5
Shneiderman, B.6
-
60
-
-
84867644146
-
Facilitating discourse analysis with interactive visualization
-
Zhao, J., Chevalier, F., Collins, C., & Balakrishnan, R. (2012). Facilitating discourse analysis with interactive visualization. TVCG, 18(12), 2639-2648.
-
(2012)
TVCG
, vol.18
, Issue.12
, pp. 2639-2648
-
-
Zhao, J.1
Chevalier, F.2
Collins, C.3
Balakrishnan, R.4
|