Visual software tools for bioinformatics

Journal of Visual Languages and Computing

Volumn 19, Issue 2, 2008, Pages 291-301

  Arndt, Timothy ^a  

^a CLEVELAND STATE UNIVERSITY   (United States)

Author keywords

Bioinformatics; Reviews; Software tools

Indexed keywords

EID: 40649084822     PISSN: 1045926X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jvlc.2007.06.001     Document Type: Article

References (13)

1. Schneider T.D., and Stephens R.M. Sequence logos: a new way to display consensus sequences. Nucleic Acids Research 18 (1990) 6097-6100
2. Schneider T.D. Sequence Walkers: a graphical method to display how binding proteins interact with DNA or RNA sequences. Nucleic Acids Research 25 (1997) 4408-4415
3. Interactive Tree of Life. 〈http://itol.embl.de/〉.
4. Strap. 〈http://www.charite.de/bioinf/strap/〉.
5. Geneious. 〈http://www.geneious.com/〉.
6. CLC Combined Workbench. 〈http://www.clcbio.com/index.php?id=92〉.
7. Genchek. 〈http://www.ocimumbio.com/web/bioinformatics/prod_details.asp?prod_id=27&prodType=1〉.
8. GENtle. 〈http://gentle.magnusmanske.de/〉.
9. MB DNA analysis. 〈http://www.molbiosoft.de/〉.
10. Goesmann A., Haubrock M., Meyer F., Kalinowski J., and Giegerich R. Pathfinder: reconstruction and dynamic visualization of metabolic pathways. Bioinformatics 18 1 (2002) 124-129
11. Y. Yang, E.S. Wurtele, C. Cruz-Neira, J.A. Dickerson, Hierarchical visualization of metabolic networks using virtual reality, in: Proceedings of the 2006 ACM International Conference on Virtual Reality Continuum and its Applications, Hong Kong, China, 2006, pp. 377-381.
12. Krane D.E., and Raymer M.L. Fundamental Concepts of Bioinformatics (2003), Benjamin Cummings
13. Gibbs C., and Jambeck P. Developing Bioinformatics Computer Skills (2001), O'Reilly, Sebastopol