Native plasmids of amino acid-producing corynebacteria

Handbook of Corynebacterium Glutamicum

Volumn , Issue , 2005, Pages 57-80

  Tauch, A ^a  

^a BIELEFELD UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84946238950     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter

References (78)

1. Abrhámová Z, Pátek M, and Nešvera J. (2002) Atypical location of the double-strand origin of replication (nic site) on the plasmid pGA1 from Corynebacterium glutamicum. Folia Microbiol. 47: 307-310.
2. Archer JAC and Sinskey AJ. (1993) The DNA sequence and minimal replicon of the Corynebacterium glutamicum plasmid pSR1: evidence of a common ancestry with plasmids from C. diphtheriae. J. Gen. Microbiol. 139: 1753-1759.
3. Argnani A, Leer RJ, van Luijk N, and Pouwels PH. (1996) A convenient and reproducible method to genetically transform bacteria of the genus Bifidobacterium. Microbiology 142: 109-114.
4. Bonamy C, Guyonvarch A, Reyes O, David F, and Leblon G. (1990) Interspecies electrotransformation in corynebacteria. FEMS Microbiol. Lett. 66: 263-270.
5. Chan Kwo Chion CKN, Duran R, Arnaud R, and Galzy P. (1991) Cloning vectors and antibiotic resistance markers for Brevibacterium sp. R312. Gene 105: 119-124.
6. del Solar G, Moscoso M, and Espinosa M. (1993) Rolling circle-replicating plasmids from gram-positive and gram-negative bacteria: a wall falls. Mol. Microbiol. 8: 789-796.
7. del Solar G., Giraldo R, Ruiz-Echevarría MJ, Espinosa M, and Díaz-Orejas R. (1998) Replication and control of circular bacterial plasmids. Microbiol. Mol. Biol. Rev. 62: 434-464.
8. de Mot R, Nagy I, de Schrijver A, Pattanapipitpaisal P, Schoofs G, and Vanderleyden J. (1997) Structural analysis of the 6 kb cryptic plasmid pFAJ2600 from Rhodococcus erythropolis NI86/21 and construction of Escherichia coli-Rhodococcus shuttle vectors. Microbiology 143: 3137-3147.
9. Duran R. (1998) New shuttle vectors for Rhodococcus sp. R312 (formerly Brevibacterium sp. 312), a nitrile hydratase producing strain. J. Basic Microbiol. 38: 101-106.
10. Espinosa M, Cohen S, Couturier M, del Solar G, Díaz-Orejas R, Giraldo R, Jánniere L, Miller C, Osborn M, and Thomas CM. (2000) Plasmid replication and copy number control. In The Horizontal Gene Pool: Bacterial Plasmids and Gene Spread, Thomas CM (Ed.), Harwood Academic Publishers, Amsterdam, pp. 1-47.
11. Fernandez-Gonzalez C, Cadenas RF, Noirot-Gros MF, Martín JF, and Gil JA. (1994) Characterization of a region of plasmid pBL1 of Brevibacterium lactofermentum involved in replication via the rolling circle model. J. Bacteriol. 176: 3154-3161.
12. Filpula D, Ally AH, and Nagle J. (1986) Complete nucleotide sequence of a native plasmid of Brevibacterium lactofermentum. Nucl. Acids Res. 14: 5114.
13. Fluit AC and Schmitz FJ. (1999) Class 1 integrons, gene cassettes, mobility, and epidemiology. Eur. J. Clin. Microbiol. Infect. Dis. 18: 761-770.
14. Fudou R, Jojima Y, Seto A, Yamada K, Kimura E, Nakamatsu T, Hiraishi A, and Yamanaka S. (2002) Corynebacterium efficiens sp. nov., a glutamic-acid-producing species from soil and vegetables. Int. J. Syst. Evol. Microbiol. 52: 1127-1131.
15. Gerdes K, Møller-Jensen J, and Jensen RB. (2000) Plasmid and chromosome partitioning: surprises from phylogeny. Mol. Microbiol. 37: 455-466.
16. Goyal D, Wachi M, Kijima N, Kobayashi M, Yukawa H, and Nagai K. (1996) A cryptic plasmid pBL1 from Brevibacterium lactofermentum causes growth inhibition and filamentation in Escherichia coli. Plasmid 36: 62-66.
17. Grohmann E, Muth G, and Espinosa M. (2003) Conjugative plasmid transfer in grampositive bacteria. Microbiol. Mol. Biol. Rev. 67: 277-301.
18. Helinski DR, Toukdarian AE, and Novick RP. (1996) Replication control and other stable maintenance mechanisms of plasmids. In Escherichia coli and Salmonella: Cellular and Molecular Biology, Neidhardt FC, Curtiss R III, Ingraham JL, Lin ECC, Low KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M, Umbarger HE (Eds.), ASM Press, Washington, DC, pp. 2295-2324.
19. Hiraga S-I, Sugiyama T, and Itoh T. (1994) Comparative analysis of the replication regions of eleven ColE2-related plasmids. J. Bacteriol. 176: 7233-7243.
20. Ilyina T and Koonin EV. (1992) Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res. 20: 3279-3285.
21. Kaneko H, Tanaka T, and Sakaguchi K. (1979) Isolation and characterization of a plasmid from Brevibacterium lactofermentum. Agric. Biol. Chem. 43: 867-868.
22. Kato F, Hara N, Matsuyama K, Hattori K, Ishii M, and Marata A. (1989) Isolation of plasmids from Brevibacterium. Agric. Biol. Chem. 53: 879-881.
23. Katsumata R, Ozaki A, Oka T, and Furuya A. (1984) Protoplast transformation of glutamate-producing bacteria with plasmid DNA. J. Bacteriol. 159: 306-311.
24. Kirchner O. (2003) Personal communication.
25. Kirchner O and Tauch A. (2003) Tools for genetic engineering in the amino acidproducing bacterium Corynebacterium glutamicum. J. Biotechnol. 104: 287-99.
26. Kohama K, Hatakeyama K, Kurusu Y, and Yukawa H. (1994) DNA fragment containing gene participating in function governing autonomous replication of plasmid. Japanese Patent Application No. JP 1994327480, issued 11/29/1994.
27. Kronemeyer W, Peekhaus N, Krämer R, Sahm H, and Eggeling L. (1995) Structure of the gluABCD cluster encoding the glutamate uptake system of Corynebacterium glutamicum. J. Bacteriol. 177, 1152-1158.
28. Kurusu Y, Satoh Y, Inui M, Kohama K, Kobayashi M, Terasawa M, and Yukawa H. (1991) Identification of plasmid partition function in coryneform bacteria. Appl. Environ. Microbiol. 57: 759-764.
29. Lei C, Ren Z, Yang W, Chen Y, Chen D, Liu M, Yan W, and Zheng Z. (2002) Characterization of a novel plasmid pXZ608 from Corynebacterium glutamicum. FEMS Microbiol. Lett. 216: 71-75.
30. Leret V, Trautwetter A, Rincé A, and Blanco C. (1998) pBLA8, from Brevibacterium linens, belongs to a gram-positive subfamily of ColE2-related plasmids. Microbiology 144: 2827-2836.
31. Lilley A, Young P, and Bailey M. (2000) Bacterial population genetics: do plasmids maintain bacterial diversity and adaptation? In The Horizontal Gene Pool: Bacterial Plasmids and Gene Spread, Thomas CM (Ed.), Harwood Academic Publishers, Amsterdam, pp. 287-300.
32. Liu M and Douthwaite S. (2002) Resistance to the macrolide antibiotic tylosin is conferred by single methylations at 23S rRNA nucleotides G748 and A2058 acting in synergy. Proc. Natl. Acad. Sci. USA 99: 14658-14663.
33. Miwa K, Matsui H, Terabe M, Nakamori S, Sano K, and Momose H. (1984) Cryptic plasmids in glutamic acid-producing bacteria. Agric. Biol. Chem. 48: 2901-2903.
34. Morikawa M, Daido H, Pongpobpibool S, and Imanaka T. (1994) Construction of a new host-vector system in Arthrobacter sp. and cloning of the lipase gene. Appl. Microbiol. Biotechnol. 42: 300-303.
35. Mukherjee KJ, Deb JK, and Ramachandran KB. (1990) Construction of vector of Brevibacterium lactofermentum and study of its stability in continuous culture. J. Biotechnol. 16: 109-122.
36. Na S, Shen T, Jia P, Men D, and Chen Q. (1991) Characterization of the natural deletion mutant of plasmid pXZ10145 in Corynebacterium glutamicum and construction of a recombinant plasmid. Chin. J. Biotechnol. 7: 271-277.
37. Nešvera J, Hochmannová J, Pátek M, Šroglová A, and Bevářova V. (1994) Transfer of the broad-host-range IncQ plasmid RSF1010 and other plasmid vectors to the gram-positive methylothroph Brevibacterium methylicum by electrotransformation. Appl. Microbiol. Biotechnol. 40: 864-866.
38. Nešvera J, Pátek M, Hochmannová J, Abrhámová Z, Bevářova V, Jelínková M, and Vohradský J. (1997) Plasmid pGA1 from Corynebacterium glutamicum codes for a gene product that positively influences plasmid copy number. J. Bacteriol. 179: 1525-1532.
39. Nešvera J, Hochmannová J, and Pátek M. (1998) An integron of class 1 is present on the plasmid pCG4 from gram-positive bacterium Corynebacterium glutamicum. FEMS Microbiol. Lett. 169: 391-395.
40. Nishio Y, Nakamura Y, Kawarabayasi Y, Usuda Y, Kimura E, Sugimoto S, Matsui K, Yamagishi A, Kikuchi H, Ikeo K, and Gojobori T. (2003) Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens. Genome Res. 13: 1572-1579.
41. Okumura MS and Kado CI. (1992) The region essential for efficient autonomous replication of pSa in Escherichia coli. Mol. Gen. Genet. 235: 55-63.
42. Ozaki A, Katsumata R, Oka T, and Furuya A. (1984) Functional expression of the genes of Escherichia coli in gram-positive Corynebacterium glutamicum. Mol. Gen. Genet. 196: 175-178.
43. Pátek M, Nešvera J, and Hochmannová J. (1989) Plasmid cloning vectors replicating in Escherichia coli, amino acid-producing coryneform bacteria and Methylobacillus sp. Appl. Microbiol. Biotechnol. 31: 65-69.
44. Recchia GD and Hall RM. (1995) Gene cassettes: a new class of mobile element. Microbiology 141: 3015-3027.
45. Sandoval H, Aguilar A, Paniagua C, and Martín JF. (1984) Isolation and physical characterization of plasmid pCC1 from Corynebacterium callunae and construction of hybrid derivatives. Appl. Microbiol. Biotechnol. 19: 409-413.
46. Sandoval H, del Real G, Mateos LM, Aguilar A, and Martín JF. (1985) Screening of plasmids in non-pathogenic corynebacteria. FEMS Microbiol. Lett. 27: 93-98.
47. Santamaría R, Gil JA, Mesas JM, and Martín JF. (1984) Characterization of an endogenous plasmid and development of cloning vectors and a transformation system in Brevibacterium lactofermentum. J. Gen. Microbiol. 130: 2237-2246.
48. Santamaría RI, Gil JA, and Martín JF. (1985) High-frequency transformation of Brevibacterium lactofermentum protoplasts by plasmid DNA. J. Bacteriol. 162: 463-467.
49. Satoh Y, Hatakeyama K, Kohama K, Kobayashi M, Kurusu Y, and Yukawa H. (1990) Electrotransformation of intact cells of Brevibacterium flavum MJ-233. J. Indust. Microbiol. 5: 159-166.
50. Schäfer A, Kalinowski J, Simon R, Seep-Feldhaus A-H, and Pühler A. (1990) Highfrequency conjugal plasmid transfer from gram-negative Escherichia coli to various gram-positive coryneform bacteria. J. Bacteriol. 172: 1663-1666.
51. Schneiker S, Keller M, Dröge M, Lanka E, Pühler A, and Selbitschka W. (2001) The genetic organization and evolution of the broad-host-range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa. Nucleic Acids Res. 29: 5169-5181.
52. Shaw P-C. (1989) Transformation of a Corynebacterium callunae-Escherichia coli hybrid plasmid to an Arthrobacter species. Agric. Biol. Chem. 53: 1717-1719.
53. Shaw P-C and Hartley BS. (1988) A host-vector system for an Arthrobacter species. J. Gen. Microbiol. 134: 903-911.
54. Shen T, Jia P, Na S, and Men D. (1993) Determination of nucleotide sequence of Corynebacterium glutamicum plasmid pXZ10145. Chin. J. Biotechnol. 9: 171-178.
55. Smith MD, Flickinger JL, Lineberger DW, and Schmidt B. (1986) Protoplast transformation in coryneform bacteria and introduction of an α-amylase gene from Bacillus amyloliquefaciens into Brevibacterium lactofermentum. Appl. Environ. Microbiol. 51: 634-639.
56. Sonnen H, Thierbach G, Kautz S, Kalinowski J, Schneider J, Pühler A, and Kutzner HJ. (1991) Characterization of pGA1, a new plasmid from Corynebacterium glutamicum LP-6. Gene 107: 69-74.
57. Stolt P and Stoker NG. (1996b) Protein-DNA interactions in the ori region of the Mycobacterium fortuitum plasmid pAL5000. J. Bacteriol. 178: 6693-6700.
58. Takechi S, Matsui H, and Itoh T. (1995) Primer RNA synthesis by plasmid-specific Rep protein for initiation of ColE2 DNA replication. EMBO J. 14: 5141-5147.
59. Takeda Y, Fujii M, Nakajyoh Y, Nishimura T, and Isshiki S. (1990) Isolation of a tetracycline resistance plasmid from a glutamate-producing corynebacterium, Corynebacterium melassecola. J. Ferment. Bioeng. 70: 177-179.
60. Tauch A, Kalinowski J, Pühler A, and Thierbach G. (1999) Plasmide aus Corynebacterium glutamicum und deren Verwendung. German Patent Application No. DE 19953206, issued 11/5/1999.
61. Tauch A, Krieft S, Kalinowski J, and Pühler A. (2000) The 51,409-bp R-plasmid pTP10 from the multiresistant clinical isolate Corynebacterium striatum M82B is composed of DNA segments initially identified in soil bacteria and in plant, animal, and human pathogens. Mol. Gen. Genet. 263: 1-11.
62. Tauch A, Pühler A, Kalinowski J, and Thierbach G. (2000) TetZ, a new tetracycline resistance determinant discovered in gram-positive bacteria, shows high homology to gram-negative regulated efflux systems. Plasmid 44: 285-291.
63. Tauch A, Götker S, Pühler A, Kalinowski J, and Thierbach G. (2002) The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100. Plasmid 48: 117-129.
64. Tauch A, Kirchner O, Löffler B, Götker S, Pühler A, and Kalinowski J. (2002) Efficient electrotransformation of Corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1. Curr. Microbiol. 45: 362-367.
65. Tauch A, Schneiker S, Selbitschka W, Pühler A, van Overbeek LS, Smalla K, Thomas CM, Bailey MJ, Forney LJ, Weightman A, Ceglowski P, Pembroke T, Tietze E, Schröder G, Lanka E, and van Elsas JD. (2002) The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere. Microbiology 148: 1637-1653.
66. Tauch A, Bischoff N, Brune I, and Kalinowski J. (2003) Insights into the genetic organization of the Corynebacterium diphtheriae erythromycin resistance plasmid pNG2 deduced from its complete nucleotide sequence. Plasmid 49: 63-74.
67. Tauch A, Pühler A, Kalinowski J, and Thierbach G. (2003) Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics. J. Biotechnol. 104: 27-40.
68. Top EM, Moenne-Loccoz Y, Pembroke T, and Thomas CM. (2000) Phenotypic traits conferred by plasmids. In The Horizontal Gene Pool: Bacterial Plasmids and Gene Spread, Thomas CM (Ed.), Harwood Academic Publishers, Amsterdam, pp. 249-285.
69. Trautwetter A and Blanco C. (1991) Structural organization of the Corynebacterium glutamicum plasmid pCG100. J. Gen. Microbiol. 137: 2093-2101.
70. Venkova T, Pátek M, and Nešvera J. (2001) Identification of a novel gene involved in stable maintenance of plasmid pGA1 from Corynebacterium glutamicum. Plasmid 46: 153-162.
71. Venkova T, Pátek M, and Nešvera J. (2002) Characterization of the cryptic plasmid pCC1 from Corynebacterium callunae and its use for vector construction. Plasmid 48: 268.
72. Venkova-Canova T, Pátek M, and Nešvera J. (2003) Control of rep gene expression in plasmid pGA1 from Corynebacterium glutamicum. J. Bacteriol. 185: 2402-2409.
73. Veselý M, Pátek M, Nešvera J, Čejková A, Masák J, and Jirků V. (2003) Host-vector system for phenol-degrading Rhodococcus erythropolis based on Corynebacterium plasmids. Appl. Microbiol. Biotechnol. 61: 523-527.
74. Yamaguchi R, Terabe M, Miwa K, Tsuchiya M, Takagi H, Morinaga Y, Nakamori S, Sano K, Momose H, and Yamazaki A. (1986) Determination of the complete nucleotide sequence of Brevibacterium lactofermentum plasmid pAM330 and analysis of its genetic information. Agric. Biol. Chem. 50: 2771-2778.
75. Yeh P, Oreglia J, Prévots F, and Sicard AM. (1986) A shuttle vector system for Brevibacterium lactofermentum. Gene 47: 301-306.
76. Yoshihama M, Higashiro K, Rao EA, Akedo M, Shanabruch WG, Follettie MT, Walker GC, and Sinskey AJ. (1985) Cloning vector system for Corynebacterium glutamicum. J. Bacteriol. 162: 591-597.
77. Zhang Y, Praszkier J, Hodgson A, and Pittard AJ. (1994) Molecular analysis and characterization of a broad-host-range plasmid, pEP2. J. Bacteriol. 176: 5718-5728.
78. Zheng Z-X, Ma C-P, Yan W-Y, He P-F, Mao Y-X, Sun W, Lei Z-Z, Zhu P, and Wu J-F. (1987) Restriction map of plasmid pXZ10145 of Corynebacterium glutamicum and construction of an integrated plasmid. Chin. J. Biotechnol. 3: 183-188.