-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0032957492
-
Structure and organization of the rrnD operon of "Brevibacterium lactofermentum": Analysis of the 16S rRNA gene
-
Amador, E., Castro, J.M., Correia, A., and Martin, J.F. 1999. Structure and organization of the rrnD operon of "Brevibacterium lactofermentum": Analysis of the 16S rRNA gene. Microbiology 145: 915-924.
-
(1999)
Microbiology
, vol.145
, pp. 915-924
-
-
Amador, E.1
Castro, J.M.2
Correia, A.3
Martin, J.F.4
-
3
-
-
0034677790
-
Elucidation of determinants of protein stability through genome sequence analysis
-
Chakravarty, S. and Varadarajan, R. 2000. Elucidation of determinants of protein stability through genome sequence analysis. FEBS Lett. 470: 65-69.
-
(2000)
FEBS Lett.
, vol.470
, pp. 65-69
-
-
Chakravarty, S.1
Varadarajan, R.2
-
4
-
-
0033777631
-
The three-dimensional structure of the ternary complex of Corynebacterium glutamicum diaminopimelate dehydrogenase-NADPH-L-2-amino-6-methylene-pimelate
-
Cirilli, M., Scapin, G., Sutherland, A., Vederas, J.C., and Blanchard, J.S. 2000. The three-dimensional structure of the ternary complex of Corynebacterium glutamicum diaminopimelate dehydrogenase-NADPH-L-2-amino-6-methylene-pimelate. Protein Sci. 9: 2034-2037.
-
(2000)
Protein Sci.
, vol.9
, pp. 2034-2037
-
-
Cirilli, M.1
Scapin, G.2
Sutherland, A.3
Vederas, J.C.4
Blanchard, J.S.5
-
5
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
Delcher, A.L., Harmon, D., Kasif, S., White, O., and Salzberg, S.L. 1999. Improved microbial gene identification with GLIMMER. Nucleic Acids Res. 27: 4636-4641.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
6
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fleischmann, R.D., Adams, M.D., White, O., Clayton, R.A., Kirkness, E.F., Kerlavage, A.R., Bult, C.J., Tomb, J.F., Dougherty, B.A., Merrick, J.M., et al. 1995. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269: 496-512.
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
Kerlavage, A.R.6
Bult, C.J.7
Tomb, J.F.8
Dougherty, B.A.9
Merrick, J.M.10
-
7
-
-
0029899126
-
A hot topic: The origin of hyperthermophiles
-
Forterre, P. 1996. A hot topic: The origin of hyperthermophiles. Cell 85: 789-792.
-
(1996)
Cell
, vol.85
, pp. 789-792
-
-
Forterre, P.1
-
8
-
-
0001528720
-
Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules
-
Fraczkiewicz, R. and Braun, W. 1998. Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules. J. Comp. Chem. 19: 319-333.
-
(1998)
J. Comp. Chem.
, vol.19
, pp. 319-333
-
-
Fraczkiewicz, R.1
Braun, W.2
-
9
-
-
0036022419
-
Corynebacterium efficiens sp. nov., a glutamic-acid-producing species from soil and vegetables
-
Fudou, R., Jojima, Y., Seto, A., Yamada, K., Kimura, E., Nakamatsu, T., Hiraishi, A., and Yamanaka, S. 2002. Corynebacterium efficiens sp. nov., a glutamic-acid-producing species from soil and vegetables. Int. J. Syst. Evol. Microbiol. 52: 1127-1131.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 1127-1131
-
-
Fudou, R.1
Jojima, Y.2
Seto, A.3
Yamada, K.4
Kimura, E.5
Nakamatsu, T.6
Hiraishi, A.7
Yamanaka, S.8
-
10
-
-
0033534584
-
A nonhyperthermophilic common ancestor to extant life forms
-
Galtier, N., Taurasse, N., and Gouy, M. 1999. A nonhyperthermophilic common ancestor to extant life forms. Science 283: 220-221.
-
(1999)
Science
, vol.283
, pp. 220-221
-
-
Galtier, N.1
Taurasse, N.2
Gouy, M.3
-
11
-
-
0033616712
-
Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species
-
Haney, P.J., Badger, J.H., Buldak, G.L., Reich, C.I., Woese, C.R., and Olsen, G.J. 1999. Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species. Proc. Natl. Acad. Sci. 96: 3578-3583.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 3578-3583
-
-
Haney, P.J.1
Badger, J.H.2
Buldak, G.L.3
Reich, C.I.4
Woese, C.R.5
Olsen, G.J.6
-
12
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff, S. and Henikoff, J.G. 1992. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. 89: 10915-10919.
-
(1992)
Proc. Natl. Acad. Sci.
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
13
-
-
0001239046
-
Corynebacterium glutamicum triggered by a decrease in the level of a complex comprising DtsR and a biotin-containing subunit
-
Kimura, E., Yagoshi, Y., Kawahara, Y., Ohsumi, T., Nakamatsu, T., and Tokuda, H. 1999. Corynebacterium glutamicum triggered by a decrease in the level of a complex comprising DtsR and a biotin-containing subunit. Biosci. Biotechnol. Biochem. 63: 1274-1278.
-
(1999)
Biosci. Biotechnol. Biochem.
, vol.63
, pp. 1274-1278
-
-
Kimura, E.1
Yagoshi, Y.2
Kawahara, Y.3
Ohsumi, T.4
Nakamatsu, T.5
Tokuda, H.6
-
14
-
-
0035312933
-
Identification of thermophilic species by the amino acid compositions deduced from their genomes
-
Kreil, D.P. and Ouzounis, C.A. 2001. Identification of thermophilic species by the amino acid compositions deduced from their genomes. Nucleic Acids Res. 29: 1608-1615.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1608-1615
-
-
Kreil, D.P.1
Ouzounis, C.A.2
-
15
-
-
0027494947
-
Codon preference in corynebacteria
-
Malumbres, M., Gil, J.A., and Martin, J.F. 1993. Codon preference in corynebacteria. Gene 134: 15-24.
-
(1993)
Gene
, vol.134
, pp. 15-24
-
-
Malumbres, M.1
Gil, J.A.2
Martin, J.F.3
-
16
-
-
0035027423
-
Patterns of temperature adaptation in proteins form the bacteria Deinococcus radiodurans and Thermus thermophilus
-
McDonald, J.H. 2001. Patterns of temperature adaptation in proteins form the bacteria Deinococcus radiodurans and Thermus thermophilus. Mol. Biol. Evol. 18: 741-749.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 741-749
-
-
McDonald, J.H.1
-
17
-
-
0032737311
-
Patterns of temperature adaptation in proteins from Methanococcus and Bacillus
-
McDonald, J.H., Grasso, A.M., and Rejto, L.K. 1999. Patterns of temperature adaptation in proteins from Methanococcus and Bacillus. Mol. Biol. Evol. 16: 1785-1790.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1785-1790
-
-
McDonald, J.H.1
Grasso, A.M.2
Rejto, L.K.3
-
18
-
-
0032417093
-
Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes
-
McLean, M.J., Wolfe, K.H., and Devine, K.M. 1998. Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes. J. Mol. Evol. 47: 691-696.
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 691-696
-
-
McLean, M.J.1
Wolfe, K.H.2
Devine, K.M.3
-
19
-
-
0029563260
-
The origin of life - Did it occur at high temperatures?
-
Miller, S.L. and Lazcano, A. 1995. The origin of life - Did it occur at high temperatures? J. Mol. Evol. 41: 689-692.
-
(1995)
J. Mol. Evol.
, vol.41
, pp. 689-692
-
-
Miller, S.L.1
Lazcano, A.2
-
20
-
-
0023984847
-
Optimal alignments in linear space
-
Myers, E.W. and Miller, W. 1988. Optimal alignments in linear space. Comput. Appl. Biosci. 4: 11-17.
-
(1988)
Comput. Appl. Biosci.
, vol.4
, pp. 11-17
-
-
Myers, E.W.1
Miller, W.2
-
22
-
-
0033772625
-
Status of genome projects for nonpathogenic bacteria and archaea
-
Nelson, K.E., Paulsen, I.T., Heidelberg, J.F., and Fraser, C.M. 2000. Status of genome projects for nonpathogenic bacteria and archaea. Nat. Biotechnol. 18: 1049-1054.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1049-1054
-
-
Nelson, K.E.1
Paulsen, I.T.2
Heidelberg, J.F.3
Fraser, C.M.4
-
23
-
-
0029790130
-
Some linked it hot
-
Nisbet, E.G. and Fowler, C.M.R. 1996. Some linked it hot. Nature 382: 404-405.
-
(1996)
Nature
, vol.382
, pp. 404-405
-
-
Nisbet, E.G.1
Fowler, C.M.R.2
-
24
-
-
0025901140
-
Origin of life - Facing up to the physical setting
-
Pace, N.R. 1991. Origin of life - Facing up to the physical setting. Cell 65: 531-533.
-
(1991)
Cell
, vol.65
, pp. 531-533
-
-
Pace, N.R.1
-
25
-
-
13044272912
-
Automated analysis of interatomic contacts in proteins
-
Sobolev, V., Sorokine, A., Prilusky, J., Abola, E.E., and Edelman, M. 1999. Automated analysis of interatomic contacts in proteins. Bioinformatics 15: 327-332.
-
(1999)
Bioinformatics
, vol.15
, pp. 327-332
-
-
Sobolev, V.1
Sorokine, A.2
Prilusky, J.3
Abola, E.E.4
Edelman, M.5
-
26
-
-
0030660581
-
A Genomic perspective on protein families
-
Tatusov, R.L., Koonin, E.V., and Lipman, D.J. 1997. A Genomic perspective on protein families. Science 278: 631-637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
27
-
-
0022591495
-
The classification of amino acid conservation
-
Taylor, W.R. 1986. The classification of amino acid conservation. J. Theor. Biol. 119: 205-218.
-
(1986)
J. Theor. Biol.
, vol.119
, pp. 205-218
-
-
Taylor, W.R.1
-
28
-
-
0035098779
-
Hyperthermophilic enzymes: Sources, uses, and molecular mechanisms for thermostability
-
Vieille, C. and Zeikus, G.J. 2001. Hyperthermophilic enzymes: Sources, uses, and molecular mechanisms for thermostability. Microbiol. Mol. Biol. Rev. 65: 1-43.
-
(2001)
Microbiol. Mol. Biol. Rev.
, vol.65
, pp. 1-43
-
-
Vieille, C.1
Zeikus, G.J.2
-
29
-
-
0035840105
-
Patterns of adaptation in a laboratory evolved thermophilic enzyme
-
1549
-
Wintrode, P.L., Miyazaki, K., and Arnold, F.H. 2001. Patterns of adaptation in a laboratory evolved thermophilic enzyme. Biochim. Biophys. Acta 1549: 1-8.
-
(2001)
Biochim. Biophys. Acta
, pp. 1-8
-
-
Wintrode, P.L.1
Miyazaki, K.2
Arnold, F.H.3
-
30
-
-
0023184331
-
Bacterial evolution
-
Woese, C.R. 1987. Bacterial evolution. Microbiol. Rev. 51: 221-271.
-
(1987)
Microbiol. Rev.
, vol.51
, pp. 221-271
-
-
Woese, C.R.1
-
31
-
-
0004834771
-
From the common ancestor of all living organisms to protoeukaryotic cell
-
(eds. J. Wiegel, and M.W.W. Adams), Taylor & Francis, London
-
Yamagishi, A., Kon, T., Takahashi, G., and Oshima, T. 1998. From the common ancestor of all living organisms to protoeukaryotic cell. In: The keys to molecular evolution and the origin of life? (eds. J. Wiegel, and M.W.W. Adams), pp. 287-295. Taylor & Francis, London.
-
(1998)
The Keys to Molecular Evolution and the Origin of Life?
, pp. 287-295
-
-
Yamagishi, A.1
Kon, T.2
Takahashi, G.3
Oshima, T.4
|