-
1
-
-
79651473931
-
Challenges and advances in systems biology analysis of Bacillus spore physiology; molecular differences between an extreme heat resistant spore forming Bacillus subtilis food isolate and a laboratory strain
-
Brul S, van Beilen J, Caspers M, O'Brien A, de Koster C, Oomes S, Smelt J, Kort R, Ter Beek A. 2011. Challenges and advances in systems biology analysis of Bacillus spore physiology; molecular differences between an extreme heat resistant spore forming Bacillus subtilis food isolate and a laboratory strain. Food Microbiol 28:221-227. http://dx.doi.org/10.1016/j.fm.2010.06.011.
-
(2011)
Food Microbiol
, vol.28
, pp. 221-227
-
-
Brul, S.1
van Beilen, J.2
Caspers, M.3
O'Brien, A.4
de Koster, C.5
Oomes, S.6
Smelt, J.7
Kort, R.8
Ter Beek, A.9
-
2
-
-
33747108049
-
Bacillus sporothermodurans and other highly heat-resistant spore formers in milk
-
Scheldeman P, Herman L, Foster S, Heyndrickx M. 2006. Bacillus sporothermodurans and other highly heat-resistant spore formers in milk. J Appl Microbiol 101:542-555. http://dx.doi.org/10.1111/j.1365-2672.2006.02964.x.
-
(2006)
J Appl Microbiol
, vol.101
, pp. 542-555
-
-
Scheldeman, P.1
Herman, L.2
Foster, S.3
Heyndrickx, M.4
-
3
-
-
15444375707
-
Incidence and diversity of potentially highly heat-resistant spores isolated at dairy farms
-
Scheldeman P, Pil A, Herman L, De Vos P, Heyndrickx M. 2005. Incidence and diversity of potentially highly heat-resistant spores isolated at dairy farms. Appl Environ Microbiol 71:1480-1494. http://dx.doi.org/10.1128/AEM.71.3.1480-1494.2005.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 1480-1494
-
-
Scheldeman, P.1
Pil, A.2
Herman, L.3
De Vos, P.4
Heyndrickx, M.5
-
4
-
-
80054023426
-
Thermal resistance of aerobic spore formers isolated from food products
-
Witthuhn M, Lucking G, Atamer Z, Ehling-Schulz M, Hinrichs J. 2011. Thermal resistance of aerobic spore formers isolated from food products. Int J Dairy Technol 64:486-493. http://dx.doi.org/10.1111/j.1471-0307.2011.00706.x.
-
(2011)
Int J Dairy Technol
, vol.64
, pp. 486-493
-
-
Witthuhn, M.1
Lucking, G.2
Atamer, Z.3
Ehling-Schulz, M.4
Hinrichs, J.5
-
5
-
-
0028888782
-
Bacillus thermoamylovorans sp. nov., a moderately thermophilic and amylolytic bacterium
-
Combet-Blanc Y, Ollivier B, Streicher C, Patel BKC, Dwivedi PP, Pot B, Prensier G, Garcia J-L. 1995. Bacillus thermoamylovorans sp. nov., a moderately thermophilic and amylolytic bacterium. Int J Syst Bacteriol 45:9-16. http://dx.doi.org/10.1099/00207713-45-1-9.
-
(1995)
Int J Syst Bacteriol
, vol.45
, pp. 9-16
-
-
Combet-Blanc, Y.1
Ollivier, B.2
Streicher, C.3
Patel, B.K.C.4
Dwivedi, P.P.5
Pot, B.6
Prensier, G.7
Garcia, J.-L.8
-
6
-
-
84909951610
-
First draft genome sequence of the amylolytic Bacillus thermoamylovorans wildtype strain 1A1 isolated from a thermophilic biogas plant
-
Koeck DE, Wibberg D, Maus I, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Liebl W, Schlüter A. 2014. First draft genome sequence of the amylolytic Bacillus thermoamylovorans wildtype strain 1A1 isolated from a thermophilic biogas plant. J Biotechnol 192A:154-155.
-
(2014)
J Biotechnol
, vol.192A
, pp. 154-155
-
-
Koeck, D.E.1
Wibberg, D.2
Maus, I.3
Winkler, A.4
Albersmeier, A.5
Zverlov, V.V.6
Pühler, A.7
Schwarz, W.H.8
Liebl, W.9
Schlüter, A.10
-
7
-
-
0032858239
-
Effect of organic complex compounds on Bacillus thermoamylovorans growth and glucose fermentation
-
Combet-Blanc Y, Dieng MC, Kergoat PY. 1999. Effect of organic complex compounds on Bacillus thermoamylovorans growth and glucose fermentation. Appl Environ Microbiol 65:4582-4585.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 4582-4585
-
-
Combet-Blanc, Y.1
Dieng, M.C.2
Kergoat, P.Y.3
-
8
-
-
79961078424
-
Bacillus thermolactis sp. nov., isolated from dairy farms, and emended description of Bacillus thermoamylovorans
-
Coorevits A, Logan NA, Dinsdale AE, Halket G, Scheldeman P, Heyndrickx M, Schumann P, Van Landschoot A, De Vos P. 2011. Bacillus thermolactis sp. nov., isolated from dairy farms, and emended description of Bacillus thermoamylovorans. Int J Syst Evol Microbiol 61:1954-1961. http://dx.doi.org/10.1099/ijs.0.024240-0.
-
(2011)
Int J Syst Evol Microbiol
, vol.61
, pp. 1954-1961
-
-
Coorevits, A.1
Logan, N.A.2
Dinsdale, A.E.3
Halket, G.4
Scheldeman, P.5
Heyndrickx, M.6
Schumann, P.7
Van Landschoot, A.8
De Vos, P.9
-
9
-
-
2542633819
-
Isolation, characterization, and identification of bacterial contaminants in semifinal gelatin extracts
-
De Clerck E, Vanhoutte T, Hebb T, Geerinck J, Devos J, De Vos P. 2004. Isolation, characterization, and identification of bacterial contaminants in semifinal gelatin extracts. Appl Environ Microbiol 70:3664-3672. http://dx.doi.org/10.1128/AEM.70.6.3664-3672.2004.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 3664-3672
-
-
De Clerck, E.1
Vanhoutte, T.2
Hebb, T.3
Geerinck, J.4
Devos, J.5
De Vos, P.6
-
10
-
-
33747106140
-
How do spores germinate?
-
Moir A. 2006. How do spores germinate? J Appl Microbiol 101:526-530. http://dx.doi.org/10.1111/j.1365-2672.2006.02885.x.
-
(2006)
J Appl Microbiol
, vol.101
, pp. 526-530
-
-
Moir, A.1
-
11
-
-
79952465087
-
Germination of spores of Bacillales and Clostridiales species: mechanisms and proteins involved
-
Paredes-Sabja D, Setlow P, Sarker MR. 2011. Germination of spores of Bacillales and Clostridiales species: mechanisms and proteins involved. Trends Microbiol 19:85-94. http://dx.doi.org/10.1016/j.tim.2010.10.004.
-
(2011)
Trends Microbiol
, vol.19
, pp. 85-94
-
-
Paredes-Sabja, D.1
Setlow, P.2
Sarker, M.R.3
-
12
-
-
84895725892
-
Germination of spores of Bacillus species: what we know and do not know
-
Setlow P. 2014. Germination of spores of Bacillus species: what we know and do not know. J Bacteriol 196:1297-1305. http://dx.doi.org/10.1128/JB.01455-13.
-
(2014)
J Bacteriol
, vol.196
, pp. 1297-1305
-
-
Setlow, P.1
-
13
-
-
0347364722
-
Spore germination
-
Setlow P. 2003. Spore germination. Curr Opin Microbiol 6:550-556. http://dx.doi.org/10.1016/j.mib.2003.10.001.
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 550-556
-
-
Setlow, P.1
-
14
-
-
0033994521
-
Role of Ger proteins in nutrient and nonnutrient triggering of spore germination in Bacillus subtilis
-
Paidhungat M, Setlow P. 2000. Role of Ger proteins in nutrient and nonnutrient triggering of spore germination in Bacillus subtilis. J Bacteriol 182:2513-2519. http://dx.doi.org/10.1128/JB.182.9.2513-2519.2000.
-
(2000)
J Bacteriol
, vol.182
, pp. 2513-2519
-
-
Paidhungat, M.1
Setlow, P.2
-
15
-
-
84880017563
-
Identification of new proteins that modulate the germination of spores of Bacillus species
-
Ramirez-Peralta A, Gupta S, Butzin XY, Setlow B, Korza G, Leyva-Vazquez M-A, Christie G, Setlow P. 2013. Identification of new proteins that modulate the germination of spores of Bacillus species. J Bacteriol 195:3009-3021. http://dx.doi.org/10.1128/JB.00257-13.
-
(2013)
J Bacteriol
, vol.195
, pp. 3009-3021
-
-
Ramirez-Peralta, A.1
Gupta, S.2
Butzin, X.Y.3
Setlow, B.4
Korza, G.5
Leyva-Vazquez, M.-A.6
Christie, G.7
Setlow, P.8
-
16
-
-
78349267621
-
The Ger receptor family from sporulating bacteria
-
Ross C, Abel-Santos E. 2010. The Ger receptor family from sporulating bacteria. Curr Issues Mol Biol 12:147-158.
-
(2010)
Curr Issues Mol Biol
, vol.12
, pp. 147-158
-
-
Ross, C.1
Abel-Santos, E.2
-
17
-
-
84881004217
-
Numbers of individual nutrient germinant receptors and other germination proteins in spores of Bacillus subtilis
-
Stewart K-AV, Setlow P. 2013. Numbers of individual nutrient germinant receptors and other germination proteins in spores of Bacillus subtilis. J Bacteriol 195:3575-3582. http://dx.doi.org/10.1128/JB.00377-13.
-
(2013)
J Bacteriol
, vol.195
, pp. 3575-3582
-
-
Stewart, K.-A.V.1
Setlow, P.2
-
18
-
-
47249104683
-
Germination properties of spores with low dipicolinic acid content
-
Keynan A, Murrell WG, Halvorson HO. 1962. Germination properties of spores with low dipicolinic acid content. J Bacteriol 83:395-399.
-
(1962)
J Bacteriol
, vol.83
, pp. 395-399
-
-
Keynan, A.1
Murrell, W.G.2
Halvorson, H.O.3
-
19
-
-
0034896712
-
Genetic requirements for induction of germination of spores of Bacillus subtilis by Ca2+-dipicolinate
-
Paidhungat M, Ragkousi K, Setlow P. 2001. Genetic requirements for induction of germination of spores of Bacillus subtilis by Ca2+-dipicolinate. J Bacteriol 183:4886-4893. http://dx.doi.org/10.1128/JB.183.16.4886-4893.2001.
-
(2001)
J Bacteriol
, vol.183
, pp. 4886-4893
-
-
Paidhungat, M.1
Ragkousi, K.2
Setlow, P.3
-
20
-
-
57349192130
-
Amino acid substitutions in transmembrane domains 9 and 10 of GerVB that affect the germination properties of Bacillus megaterium spores
-
Christie G, Lowe CR. 2008. Amino acid substitutions in transmembrane domains 9 and 10 of GerVB that affect the germination properties of Bacillus megaterium spores. J Bacteriol 190:8009-8017. http://dx.doi.org/10.1128/JB.01073-08.
-
(2008)
J Bacteriol
, vol.190
, pp. 8009-8017
-
-
Christie, G.1
Lowe, C.R.2
-
21
-
-
0036667425
-
Analysis of spore cortex lytic enzymes and related proteins in Bacillus subtilis endospore germination
-
Chirakkal H, O'Rourke M, Atrih A, Foster SJ, Moir A. 2002. Analysis of spore cortex lytic enzymes and related proteins in Bacillus subtilis endospore germination. Microbiology 148:2383-2392. http://dx.doi.org/10.1099/00221287-148-8-2383.
-
(2002)
Microbiology
, vol.148
, pp. 2383-2392
-
-
Chirakkal, H.1
O'Rourke, M.2
Atrih, A.3
Foster, S.J.4
Moir, A.5
-
22
-
-
79954418530
-
Bacterial spores in food: how phenotypic variability complicates prediction of spore properties and bacterial behavior
-
Eijlander RT, Abee T, Kuipers OP. 2011. Bacterial spores in food: how phenotypic variability complicates prediction of spore properties and bacterial behavior. Curr Opin Biotechnol 22:180-186. http://dx.doi.org/10.1016/j.copbio.2010.11.009.
-
(2011)
Curr Opin Biotechnol
, vol.22
, pp. 180-186
-
-
Eijlander, R.T.1
Abee, T.2
Kuipers, O.P.3
-
23
-
-
63049092165
-
Isolation and characterization of superdormant spores of Bacillus species
-
Ghosh S, Setlow P. 2009. Isolation and characterization of superdormant spores of Bacillus species. J Bacteriol 191:1787-1797. http://dx.doi.org/10.1128/JB.01668-08.
-
(2009)
J Bacteriol
, vol.191
, pp. 1787-1797
-
-
Ghosh, S.1
Setlow, P.2
-
24
-
-
74049145659
-
The preparation, germination properties and stability of superdormant spores of Bacillus cereus
-
Ghosh S, Setlow P. 2010. The preparation, germination properties and stability of superdormant spores of Bacillus cereus. J Appl Microbiol 108: 582-590. http://dx.doi.org/10.1111/j.1365-2672.2009.04442.x.
-
(2010)
J Appl Microbiol
, vol.108
, pp. 582-590
-
-
Ghosh, S.1
Setlow, P.2
-
25
-
-
84875508793
-
Isolation and characterization of Bacillus subtilis spores that are superdormant for germination with dodecylamine or Ca2+-dipicolinic acid
-
Perez-Valdespino A, Ghosh S, Cammett EP, Kong L, Li YQ, Setlow P. 2013. Isolation and characterization of Bacillus subtilis spores that are superdormant for germination with dodecylamine or Ca2+-dipicolinic acid. J Appl Microbiol 114:1109-1119. http://dx.doi.org/10.1111/jam.12125.
-
(2013)
J Appl Microbiol
, vol.114
, pp. 1109-1119
-
-
Perez-Valdespino, A.1
Ghosh, S.2
Cammett, E.P.3
Kong, L.4
Li, Y.Q.5
Setlow, P.6
-
26
-
-
79955633772
-
Moist-heat resistance, spore aging, and superdormancy in Clostridium difficile
-
Rodriguez-Palacios A, Lejeune JT. 2011. Moist-heat resistance, spore aging, and superdormancy in Clostridium difficile. Appl Environ Microbiol 77:3085-3091. http://dx.doi.org/10.1128/AEM.01589-10.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 3085-3091
-
-
Rodriguez-Palacios, A.1
Lejeune, J.T.2
-
27
-
-
84861218321
-
Levels of germination proteins in dormant and superdormant spores of Bacillus subtilis
-
Ghosh S, Scotland M, Setlow P. 2012. Levels of germination proteins in dormant and superdormant spores of Bacillus subtilis. J Bacteriol 194: 2221-2227. http://dx.doi.org/10.1128/JB.00151-12.
-
(2012)
J Bacteriol
, vol.194
, pp. 2221-2227
-
-
Ghosh, S.1
Scotland, M.2
Setlow, P.3
-
28
-
-
84871868369
-
A meta-analysis accounting for sources of variability to estimate heat resistance reference parameters of bacteria using hierarchical Bayesian modeling: estimation of D at 121.1 degrees C and pH 7, zT and zpH of Geobacillus stearothermophilus
-
Rigaux C, Denis JB, Albert I, Carlin F. 2013. A meta-analysis accounting for sources of variability to estimate heat resistance reference parameters of bacteria using hierarchical Bayesian modeling: estimation of D at 121.1 degrees C and pH 7, zT and zpH of Geobacillus stearothermophilus. Int J Food Microbiol 161:112-120. http://dx.doi.org/10.1016/j.ijfoodmicro.2012.12.001.
-
(2013)
Int J Food Microbiol
, vol.161
, pp. 112-120
-
-
Rigaux, C.1
Denis, J.B.2
Albert, I.3
Carlin, F.4
-
29
-
-
84915784907
-
Bacterial spoilers of food: behavior, fitness and functional properties
-
Remenant B, Jaffrès E, Dousset X, Pilet M-F, Zagorec M. 2015. Bacterial spoilers of food: behavior, fitness and functional properties. Food Microbiol 45A:45-53.
-
(2015)
Food Microbiol
, vol.45A
, pp. 45-53
-
-
Remenant, B.1
Jaffrès, E.2
Dousset, X.3
Pilet, M.-F.4
Zagorec, M.5
-
30
-
-
85007463488
-
Draft genome sequences of four Bacillus thermoamylovorans strains isolated from milk and acacia gum, a food ingredient
-
Krawczyk AO, Berendsen EM, Eijlander RT, de Jong A, Wells-Bennik MHJ, Kuipers OP. 2015. Draft genome sequences of four Bacillus thermoamylovorans strains isolated from milk and acacia gum, a food ingredient. Genome Announc 3:e00165-15. http://dx.doi.org/10.1128/genomeA.00165-15.
-
(2015)
Genome Announc
, vol.3
-
-
Krawczyk, A.O.1
Berendsen, E.M.2
Eijlander, R.T.3
de Jong, A.4
Wells-Bennik, M.H.J.5
Kuipers, O.P.6
-
31
-
-
84915753968
-
Two distinct groups within the Bacillus subtilis group display significantly different spore heat resistance properties
-
Berendsen EM, Zwietering MH, Kuipers OP, Wells-Bennik MHJ. 2015. Two distinct groups within the Bacillus subtilis group display significantly different spore heat resistance properties. Food Microbiol 45A:18-25.
-
(2015)
Food Microbiol
, vol.45A
, pp. 18-25
-
-
Berendsen, E.M.1
Zwietering, M.H.2
Kuipers, O.P.3
Wells-Bennik, M.H.J.4
-
32
-
-
0013802592
-
Catabolic repression of bacterial sporulation
-
Schaeffer P, Millet J, Aubert JP. 1965. Catabolic repression of bacterial sporulation. Proc Natl Acad Sci U S A 54:704-711. http://dx.doi.org/10.1073/pnas.54.3.704.
-
(1965)
Proc Natl Acad Sci U S A
, vol.54
, pp. 704-711
-
-
Schaeffer, P.1
Millet, J.2
Aubert, J.P.3
-
33
-
-
0033865159
-
Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities
-
Gasol JM, Del Giorgio PA. 2000. Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities. Sci Mar 64:197-224.
-
(2000)
Sci Mar
, vol.64
, pp. 197-224
-
-
Gasol, J.M.1
Del Giorgio, P.A.2
-
34
-
-
34447536760
-
Factors involved in the germination and inactivation of Bacillus anthracis spores in murine primary macrophages
-
Hu H, Emerson J, Aronson AI. 2007. Factors involved in the germination and inactivation of Bacillus anthracis spores in murine primary macrophages. FEMS Microbiol Lett 272:245-250. http://dx.doi.org/10.1111/j.1574-6968.2007.00766.x.
-
(2007)
FEMS Microbiol Lett
, vol.272
, pp. 245-250
-
-
Hu, H.1
Emerson, J.2
Aronson, A.I.3
-
35
-
-
54049111718
-
Modelling the effect of sub(lethal) heat treatment of Bacillus subtilis spores on germination rate and outgrowth to exponentially growing vegetative cells
-
Smelt JPPM, Bos AP, Kort R, Brul S. 2008. Modelling the effect of sub(lethal) heat treatment of Bacillus subtilis spores on germination rate and outgrowth to exponentially growing vegetative cells. Int J Food Microbiol 128:34-40. http://dx.doi.org/10.1016/j.ijfoodmicro.2008.08.023.
-
(2008)
Int J Food Microbiol
, vol.128
, pp. 34-40
-
-
Smelt, J.P.P.M.1
Bos, A.P.2
Kort, R.3
Brul, S.4
-
36
-
-
84862520770
-
Fiji: an open-source platform for biological-image analysis
-
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez J-Y, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A. 2012. Fiji: an open-source platform for biological-image analysis. Nat Methods 9:676-682. http://dx.doi.org/10.1038/nmeth.2019.
-
(2012)
Nat Methods
, vol.9
, pp. 676-682
-
-
Schindelin, J.1
Arganda-Carreras, I.2
Frise, E.3
Kaynig, V.4
Longair, M.5
Pietzsch, T.6
Preibisch, S.7
Rueden, C.8
Saalfeld, S.9
Schmid, B.10
Tinevez, J.-Y.11
White, D.J.12
Hartenstein, V.13
Eliceiri, K.14
Tomancak, P.15
Cardona, A.16
-
37
-
-
33745153073
-
Thermal inactivation of Bacillus anthracis spores in cow's milk
-
Xu S, Labuza TP, Diez-Gonzalez F. 2006. Thermal inactivation of Bacillus anthracis spores in cow's milk. Appl Environ Microbiol 72:4479-4483. http://dx.doi.org/10.1128/AEM.00096-06.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 4479-4483
-
-
Xu, S.1
Labuza, T.P.2
Diez-Gonzalez, F.3
-
38
-
-
33746298073
-
GInaFiT, a freeware tool to assess non-log-linear microbial survivor curves
-
(Erratum.)
-
Geeraerd AH, Valdramidis VP, Van Impe JF. 2006. GInaFiT, a freeware tool to assess non-log-linear microbial survivor curves. Int J Food Microbiol 110:297. (Erratum.) http://dx.doi.org/10.1016/j.ijfoodmicro.2006.04.002.
-
(2006)
Int J Food Microbiol
, vol.110
, pp. 297
-
-
Geeraerd, A.H.1
Valdramidis, V.P.2
Van Impe, J.F.3
-
39
-
-
32344433769
-
A systematic approach to determine global thermal inactivation parameters for various food pathogens
-
van Asselt ED, Zwietering MH. 2006. A systematic approach to determine global thermal inactivation parameters for various food pathogens. Int J Food Microbiol 107:73-82. http://dx.doi.org/10.1016/j.ijfoodmicro.2005.08.014.
-
(2006)
Int J Food Microbiol
, vol.107
, pp. 73-82
-
-
van Asselt, E.D.1
Zwietering, M.H.2
-
40
-
-
0141519279
-
OrthoMCL: identification of ortholog groups for eukaryotic genomes
-
Li L, Stoeckert CJ, Jr, Roos DS. 2003. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 13:2178-2189. http://dx.doi.org/10.1101/gr.1224503.
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
41
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797. http://dx.doi.org/10.1093/nar/gkh340.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
42
-
-
77955591777
-
Hidden Markov model speed heuristic and iterative HMM search procedure
-
Johnson LS, Eddy S, Portugaly E. 2010. Hidden Markov model speed heuristic and iterative HMM search procedure. BMC Bioinformatics 11: 431. http://dx.doi.org/10.1186/1471-2105-11-431.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 431
-
-
Johnson, L.S.1
Eddy, S.2
Portugaly, E.3
-
43
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704. http://dx.doi.org/10.1080/10635150390235520.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
44
-
-
84891804612
-
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
-
Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, Edwards RA, Gerdes S, Parrello B, Shukla M, Vonstein V, Wattam AR, Xia F, Stevens R. 2014. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res 42: D206-D214. http://dx.doi.org/10.1093/nar/gkt1226.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D206-D214
-
-
Overbeek, R.1
Olson, R.2
Pusch, G.D.3
Olsen, G.J.4
Davis, J.J.5
Disz, T.6
Edwards, R.A.7
Gerdes, S.8
Parrello, B.9
Shukla, M.10
Vonstein, V.11
Wattam, A.R.12
Xia, F.13
Stevens, R.14
-
45
-
-
40549120596
-
The RAST Server: rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75. http://dx.doi.org/10.1186/1471-2164-9-75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
Edwards, R.A.6
Formsma, K.7
Gerdes, S.8
Glass, E.M.9
Kubal, M.10
Meyer, F.11
Olsen, G.J.12
Olson, R.13
Osterman, A.L.14
Overbeek, R.A.15
McNeil, L.K.16
Paarmann, D.17
Paczian, T.18
Parrello, B.19
Pusch, G.D.20
Reich, C.21
Stevens, R.22
Vassieva, O.23
Vonstein, V.24
Wilke, A.25
Zagnitko, O.26
more..
-
46
-
-
84891767234
-
SporeWeb: an interactive journey through the complete sporulation cycle of Bacillus subtilis
-
Eijlander RT, de Jong A, Krawczyk AO, Holsappel S, Kuipers OP. 2014. SporeWeb: an interactive journey through the complete sporulation cycle of Bacillus subtilis. Nucleic Acids Res 42:D685-D691. http://dx.doi.org/10.1093/nar/gkt1007.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D685-D691
-
-
Eijlander, R.T.1
de Jong, A.2
Krawczyk, A.O.3
Holsappel, S.4
Kuipers, O.P.5
-
47
-
-
0347126296
-
DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics
-
Makita Y, Nakao M, Ogasawara N, Nakai K. 2004. DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics. Nucleic Acids Res 32:D75-D77. http://dx.doi.org/10.1093/nar/gkh074.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. D75-D77
-
-
Makita, Y.1
Nakao, M.2
Ogasawara, N.3
Nakai, K.4
-
48
-
-
4644279904
-
Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data
-
Baerends R, Smits W, de Jong A, Hamoen L, Kok J, Kuipers O. 2004. Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data. Genome Biol. 5:R37. http://dx.doi.org/10.1186/gb-2004-5-5-r37.
-
(2004)
Genome Biol
, vol.5
-
-
Baerends, R.1
Smits, W.2
de Jong, A.3
Hamoen, L.4
Kok, J.5
Kuipers, O.6
-
49
-
-
33845664544
-
Analysis of factors influencing the rate of germination of spores of Bacillus subtilis by very high pressure
-
Black EP, Wei J, Atluri S, Cortezzo DE, Koziol-Dube K, Hoover DG, Setlow P. 2007. Analysis of factors influencing the rate of germination of spores of Bacillus subtilis by very high pressure. J Appl Microbiol 102:65-76. http://dx.doi.org/10.1111/j.1365-2672.2006.03062.x.
-
(2007)
J Appl Microbiol
, vol.102
, pp. 65-76
-
-
Black, E.P.1
Wei, J.2
Atluri, S.3
Cortezzo, D.E.4
Koziol-Dube, K.5
Hoover, D.G.6
Setlow, P.7
-
50
-
-
85027933653
-
High pressure germination of Bacillus subtilis spores with alterations in levels and types of germination proteins
-
Doona CJ, Ghosh S, Feeherry FF, Ramirez-Peralta A, Huang Y, Chen H, Setlow P. 2014. High pressure germination of Bacillus subtilis spores with alterations in levels and types of germination proteins. J Appl Microbiol 117:711-720. http://dx.doi.org/10.1111/jam.12557.
-
(2014)
J Appl Microbiol
, vol.117
, pp. 711-720
-
-
Doona, C.J.1
Ghosh, S.2
Feeherry, F.F.3
Ramirez-Peralta, A.4
Huang, Y.5
Chen, H.6
Setlow, P.7
-
51
-
-
33846626982
-
Role of GerD in germination of Bacillus subtilis Spores
-
Pelczar PL, Igarashi T, Setlow B, Setlow P. 2007. Role of GerD in germination of Bacillus subtilis Spores. J Bacteriol 189:1090-1098. http://dx.doi.org/10.1128/JB.01606-06.
-
(2007)
J Bacteriol
, vol.189
, pp. 1090-1098
-
-
Pelczar, P.L.1
Igarashi, T.2
Setlow, B.3
Setlow, P.4
-
52
-
-
84868618557
-
Analysis of the effects of a gerP mutation on the germination of spores of Bacillus subtilis
-
Butzin XY, Troiano AJ, Coleman WH, Griffiths KK, Doona CJ, Feeherry FE, Wang G, Li Y-Q, Setlow P. 2012. Analysis of the effects of a gerP mutation on the germination of spores of Bacillus subtilis. J Bacteriol 194: 5749-5758. http://dx.doi.org/10.1128/JB.01276-12.
-
(2012)
J Bacteriol
, vol.194
, pp. 5749-5758
-
-
Butzin, X.Y.1
Troiano, A.J.2
Coleman, W.H.3
Griffiths, K.K.4
Doona, C.J.5
Feeherry, F.E.6
Wang, G.7
Li, Y.-Q.8
Setlow, P.9
-
53
-
-
2342499098
-
Effects of a gerF (lgt) mutation on the germination of spores of Bacillus subtilis
-
Igarashi T, Setlow B, Paidhungat M, Setlow P. 2004. Effects of a gerF (lgt) mutation on the germination of spores of Bacillus subtilis. J Bacteriol 186:2984-2991. http://dx.doi.org/10.1128/JB.186.10.2984-2991.2004.
-
(2004)
J Bacteriol
, vol.186
, pp. 2984-2991
-
-
Igarashi, T.1
Setlow, B.2
Paidhungat, M.3
Setlow, P.4
-
54
-
-
84899750952
-
Function of the SpoVAEa and SpoVAF proteins of Bacillus subtilis spores
-
Perez-Valdespino A, Li Y, Setlow B, Ghosh S, Pan D, Korza G, Feeherry FE, Doona CJ, Li Y-Q, Hao B, Setlow P. 2014. Function of the SpoVAEa and SpoVAF proteins of Bacillus subtilis spores. J Bacteriol 196:2077-2088. http://dx.doi.org/10.1128/JB.01546-14.
-
(2014)
J Bacteriol
, vol.196
, pp. 2077-2088
-
-
Perez-Valdespino, A.1
Li, Y.2
Setlow, B.3
Ghosh, S.4
Pan, D.5
Korza, G.6
Feeherry, F.E.7
Doona, C.J.8
Li, Y.-Q.9
Hao, B.10
Setlow, P.11
-
55
-
-
47249125402
-
Role of dipicolinic acid in the germination, stability, and viability of spores of Bacillus subtilis
-
Magge A, Granger AC, Wahome PG, Setlow B, Vepachedu VR, Loshon CA, Peng L, Chen D, Li Y-Q, Setlow P. 2008. Role of dipicolinic acid in the germination, stability, and viability of spores of Bacillus subtilis. J Bacteriol 190:4798-4807. http://dx.doi.org/10.1128/JB.00477-08.
-
(2008)
J Bacteriol
, vol.190
, pp. 4798-4807
-
-
Magge, A.1
Granger, A.C.2
Wahome, P.G.3
Setlow, B.4
Vepachedu, V.R.5
Loshon, C.A.6
Peng, L.7
Chen, D.8
Li, Y.-Q.9
Setlow, P.10
-
56
-
-
0037378730
-
Identification of a new gene essential for germination of Bacillus subtilis spores with Ca2+-dipicolinate
-
Ragkousi K, Eichenberger P, van Ooij C, Setlow P. 2003. Identification of a new gene essential for germination of Bacillus subtilis spores with Ca2+-dipicolinate. J Bacteriol 185:2315-2329. http://dx.doi.org/10.1128/JB.185.7.2315-2329.2003.
-
(2003)
J Bacteriol
, vol.185
, pp. 2315-2329
-
-
Ragkousi, K.1
Eichenberger, P.2
van Ooij, C.3
Setlow, P.4
-
57
-
-
84877947352
-
Activity and regulation of various forms of CwlJ, SleB, and YpeB proteins in degrading cortex peptidoglycan of spores of Bacillus species in vitro and during spore germination
-
Li Y, Butzin XY, Davis A, Setlow B, Korza G, Üstok FI, Christie G, Setlow P, Hao B. 2013. Activity and regulation of various forms of CwlJ, SleB, and YpeB proteins in degrading cortex peptidoglycan of spores of Bacillus species in vitro and during spore germination. J Bacteriol 195: 2530-2540. http://dx.doi.org/10.1128/JB.00259-13.
-
(2013)
J Bacteriol
, vol.195
, pp. 2530-2540
-
-
Li, Y.1
Butzin, X.Y.2
Davis, A.3
Setlow, B.4
Korza, G.5
Üstok, F.I.6
Christie, G.7
Setlow, P.8
Hao, B.9
-
58
-
-
33644886345
-
Cooperativity between different nutrient receptors in germination of spores of Bacillus subtilis and reduction of this cooperativity by alterations in the GerB receptor
-
Atluri S, Ragkousi K, Cortezzo DE, Setlow P. 2006. Cooperativity between different nutrient receptors in germination of spores of Bacillus subtilis and reduction of this cooperativity by alterations in the GerB receptor. J Bacteriol 188:28-36. http://dx.doi.org/10.1128/JB.188.1.28-36.2006.
-
(2006)
J Bacteriol
, vol.188
, pp. 28-36
-
-
Atluri, S.1
Ragkousi, K.2
Cortezzo, D.E.3
Setlow, P.4
-
59
-
-
79955530029
-
Amino acid residues in the GerAB protein important in the function and assembly of the alanine spore germination receptor of Bacillus subtilis 168
-
Cooper GR, Moir A. 2011. Amino acid residues in the GerAB protein important in the function and assembly of the alanine spore germination receptor of Bacillus subtilis 168. J Bacteriol 193:2261-2267. http://dx.doi.org/10.1128/JB.01397-10.
-
(2011)
J Bacteriol
, vol.193
, pp. 2261-2267
-
-
Cooper, G.R.1
Moir, A.2
-
60
-
-
79961162496
-
Structure-based functional studies of the effects of amino acid substitutions in GerBC, the C subunit of the Bacillus subtilis GerB spore germinant receptor
-
Li Y, Catta P, Stewart K-AV, Dufner M, Setlow P, Hao B. 2011. Structure-based functional studies of the effects of amino acid substitutions in GerBC, the C subunit of the Bacillus subtilis GerB spore germinant receptor. J Bacteriol 193:4143-4152. http://dx.doi.org/10.1128/JB.05247-11.
-
(2011)
J Bacteriol
, vol.193
, pp. 4143-4152
-
-
Li, Y.1
Catta, P.2
Stewart, K.-A.V.3
Dufner, M.4
Setlow, P.5
Hao, B.6
-
61
-
-
66849118916
-
Characterization of the germination of Bacillus megaterium spores lacking enzymes that degrade the spore cortex
-
Setlow B, Peng L, Loshon CA, Li YQ, Christie G, Setlow P. 2009. Characterization of the germination of Bacillus megaterium spores lacking enzymes that degrade the spore cortex. J Appl Microbiol 107:318-328. http://dx.doi.org/10.1111/j.1365-2672.2009.04210.x.
-
(2009)
J Appl Microbiol
, vol.107
, pp. 318-328
-
-
Setlow, B.1
Peng, L.2
Loshon, C.A.3
Li, Y.Q.4
Christie, G.5
Setlow, P.6
-
62
-
-
0032193201
-
Thermal death kinetics of spores of Bacillus sporothermodurans isolated from UHT milk
-
Huemer IA, Klijn N, Vogelsang HWJ, Langeveld LPM. 1998. Thermal death kinetics of spores of Bacillus sporothermodurans isolated from UHT milk. Int Dairy J 8:851-855. http://dx.doi.org/10.1016/S0958-6946(98)00129-0.
-
(1998)
Int Dairy J
, vol.8
, pp. 851-855
-
-
Huemer, I.A.1
Klijn, N.2
Vogelsang, H.W.J.3
Langeveld, L.P.M.4
-
63
-
-
80051569482
-
Germination proteins in the inner membrane of dormant Bacillus subtilis spores colocalize in a discrete cluster
-
Griffiths KK, Zhang J, Cowan AE, Yu J, Setlow P. 2011. Germination proteins in the inner membrane of dormant Bacillus subtilis spores colocalize in a discrete cluster. Mol Microbiol 81:1061-1077. http://dx.doi.org/10.1111/j.1365-2958.2011.07753.x.
-
(2011)
Mol Microbiol
, vol.81
, pp. 1061-1077
-
-
Griffiths, K.K.1
Zhang, J.2
Cowan, A.E.3
Yu, J.4
Setlow, P.5
-
64
-
-
0028101098
-
Molecular genetical and phenotypical analysis of the gerM spore germination gene of Bacillus subtilis 168
-
Slynn GM, Sammons RL, Smith DA, Moir A, Corfe BM. 1994. Molecular genetical and phenotypical analysis of the gerM spore germination gene of Bacillus subtilis 168. FEMS Microbiology Lett 121:315-320. http://dx.doi.org/10.1111/j.1574-6968.1994.tb07119.x.
-
(1994)
FEMS Microbiology Lett
, vol.121
, pp. 315-320
-
-
Slynn, G.M.1
Sammons, R.L.2
Smith, D.A.3
Moir, A.4
Corfe, B.M.5
-
65
-
-
0026087747
-
Cloning, nucleotide sequence, and regulation of the Bacillus subtilis gpr gene, which codes for the protease that initiates degradation of small, acid-soluble proteins during spore germination
-
Sussman MD, Setlow P. 1991. Cloning, nucleotide sequence, and regulation of the Bacillus subtilis gpr gene, which codes for the protease that initiates degradation of small, acid-soluble proteins during spore germination. J Bacteriol 173:291-300.
-
(1991)
J Bacteriol
, vol.173
, pp. 291-300
-
-
Sussman, M.D.1
Setlow, P.2
|