Xenopus tropicalis genome re-scaffolding and re-annotation reach the resolution required for in vivo ChIA-PET analysis

PLoS ONE

Volumn 10, Issue 9, 2015, Pages

  Buisine, Nicolas ^a   Ruan, Xiaoan ^b,c,d   Bilesimo, Patrice ^a,e   Grimaldi, Alexis ^a   Alfama, Gladys ^a   Ariyaratne, Pramila ^d   Mulawadi, Fabianus ^d   Chen, Jieqi ^d   Sung, Wing Kin ^d   Liu, Edison T ^b,c,d   Demeneix, Barbara A ^a   Ruan, Yijun ^b,c,d   Sachs, Laurent M ^a  

^a MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^b JACKSON LABORATORY   (United States)

^c UNIVERSITY OF CONNECTICUT   (United States)

^d GENOME INSTITUTE OF SINGAPORE   (Singapore)

^e WATCHFROG S A   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; MESSENGER RNA; RNA POLYMERASE II; THYROID HORMONE; CHROMATIN; RNA; TRANSCRIPTOME;

ARTICLE; BINDING AFFINITY; BINDING SITE; DNA BINDING; DNA FLANKING REGION; GENE EXPRESSION; GENE INTERACTION; GENE NUMBER; GENE REGULATORY NETWORK; GENOME ANALYSIS; GENOME SIZE; IN VIVO STUDY; METAMORPHOSIS; NEXT GENERATION SEQUENCING; NONHUMAN; RNA SEQUENCE; SEQUENCE ANALYSIS; XENOPUS TROPICALIS; ANIMAL; CHROMATIN; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; GENOME; HUMAN; MOLECULAR GENETICS; XENOPUS;

ANIMALS; CHROMATIN; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORKS; GENOME; HUMANS; MOLECULAR SEQUENCE ANNOTATION; RNA; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; THYROID HORMONES; TRANSCRIPTOME; XENOPUS;

EID: 84945208358     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0137526     Document Type: Article

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