-
1
-
-
34547633677
-
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
-
10.1038/nmeth1068. 17558387
-
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Robertson G Hirst M, Bainbridge M Bilenky M, Zhao Y Zeng T, Euskirchen G Bernier B, Varhol R Delaney A, Thiessen N Griffith OL, He A Marra M, Snyder M Jones S, Nat Methods 2007 4 651 657 10.1038/nmeth1068 17558387
-
(2007)
Nat Methods
, vol.4
, pp. 651-657
-
-
Robertson, G.1
Hirst, M.2
Bainbridge, M.3
Bilenky, M.4
Zhao, Y.5
Zeng, T.6
Euskirchen, G.7
Bernier, B.8
Varhol, R.9
Delaney, A.10
Thiessen, N.11
Griffith, O.L.12
He, A.13
Marra, M.14
Snyder, M.15
Jones, S.16
-
2
-
-
44649117905
-
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
-
10.1016/j.cell.2008.04.043. 18555785
-
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Chen X Xu H Yuan P Fang F, Huss M Vega VB, Wong E Orlov YL, Zhang W Jiang J, Loh YH Yeo HC, Yeo ZX Narang V, Govindarajan KR Leong B, Shahab A Ruan Y, Bourque G Sung WK, Clarke ND Wei CL, Ng HH., Cell 2008 133 1106 1117 10.1016/j.cell.2008.04.043 18555785
-
(2008)
Cell
, vol.133
, pp. 1106-1117
-
-
Chen, X.1
Xu, H.2
Yuan, P.3
Fang, F.4
Huss, M.5
Vega, V.B.6
Wong, E.7
Orlov, Y.L.8
Zhang, W.9
Jiang, J.10
Loh, Y.H.11
Yeo, H.C.12
Yeo, Z.X.13
Narang, V.14
Govindarajan, K.R.15
Leong, B.16
Shahab, A.17
Ruan, Y.18
Bourque Sung G, W.K.19
Clarke, N.D.20
Wei, C.L.21
Ng, H.H.22
more..
-
3
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
10.1016/j.cell.2007.05.009. 17512414
-
High-resolution profiling of histone methylations in the human genome. Barski A Cuddapah S Cui K Roh TY, Schones DE Wang Z, Wei G Chepelev I, Zhao K., Cell 2007 129 823 837 10.1016/j.cell.2007.05.009 17512414
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
4
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
10.1016/j.cell.2006.02.041. 16630819
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Bernstein BE Mikkelsen TS Xie X Kamal M, Huebert DJ Cuff J, Fry B Meissner A, Wernig M Plath K, Jaenisch R Wagschal A, Feil R Schreiber SL, Lander ES., Cell 2006 125 315 326 10.1016/j.cell.2006.02.041 16630819
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
Jaenisch, R.11
Wagschal, A.12
Feil, R.13
Schreiber, S.L.14
Lander, E.S.15
-
5
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
10.1038/nature06008. 17603471
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Mikkelsen TS Ku M, Jaffe DB Issac B, Lieberman E Giannoukos G, Alvarez P Brockman W, Kim TK Koche RP, Lee W Mendenhall E, O'Donovan A Presser A, Russ C Xie X, Meissner A Wernig M, Jaenisch R Nusbaum C, Lander ES Bernstein BE, Nature 2007 448 553 560 10.1038/nature06008 17603471
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
Giannoukos, G.6
Alvarez, P.7
Brockman, W.8
Kim, T.K.9
Koche, R.P.10
Lee, W.11
Mendenhall, E.12
O'Donovan, A.13
Presser, A.14
Russ, C.15
Xie, X.16
Meissner, A.17
Wernig, M.18
Jaenisch, R.19
Nusbaum, C.20
Lander, E.S.21
Bernstein, B.E.22
more..
-
6
-
-
46449094276
-
Dissecting direct reprogramming through integrative genomic analysis
-
10.1038/nature07056. 18509334
-
Dissecting direct reprogramming through integrative genomic analysis. Mikkelsen TS Hanna J, Zhang X Ku M, Wernig M Schorderet P, Bernstein BE Jaenisch R, Lander ES Meissner A, Nature 2008 454 49 55 10.1038/nature07056 18509334
-
(2008)
Nature
, vol.454
, pp. 49-55
-
-
Mikkelsen, T.S.1
Hanna, J.2
Zhang, X.3
Ku, M.4
Wernig, M.5
Schorderet, P.6
Bernstein, B.E.7
Jaenisch, R.8
Lander, E.S.9
Meissner, A.10
-
7
-
-
49549113199
-
A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome
-
10.1016/j.cell.2008.06.033. 18724933
-
A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome. Alekseyenko AA Peng S Larschan E Gorchakov AA, Lee OK Kharchenko P, McGrath SD Wang CI, Mardis ER Park PJ, Kuroda MI., Cell 2008 134 599 609 10.1016/j.cell.2008.06.033 18724933
-
(2008)
Cell
, vol.134
, pp. 599-609
-
-
Alekseyenko, A.A.1
Peng, S.2
Larschan, E.3
Gorchakov, A.A.4
Lee, O.K.5
Kharchenko, P.6
McGrath, S.D.7
Wang, C.I.8
Mardis, E.R.9
Park, P.J.10
Kuroda, M.I.11
-
8
-
-
60349089645
-
Nucleosome positioning and gene regulation: Advances through genomics
-
10.1038/nrg2522. 19204718
-
Nucleosome positioning and gene regulation: advances through genomics. Jiang C Pugh BF, Nat Rev Genet 2009 10 161 172 10.1038/nrg2522 19204718
-
(2009)
Nat Rev Genet
, vol.10
, pp. 161-172
-
-
Jiang, C.1
Pugh, B.F.2
-
9
-
-
65949090511
-
Target genes of the MADS transcription factor SEPALLATA3: Integration of developmental and hormonal pathways in the Arabidopsis flower
-
10.1371/journal.pbio.1000090. 19385720
-
Target genes of the MADS transcription factor SEPALLATA3: integration of developmental and hormonal pathways in the Arabidopsis flower. Kaufmann K Muĩo JM Jauregui R Airoldi CA, Smaczniak C Krajewski P, Angenent GC., PLoS Biol 2009 7 1000090 10.1371/journal.pbio.1000090 19385720
-
(2009)
PLoS Biol
, vol.7
, pp. 51000090
-
-
Kaufmann, K.1
Muĩo, J.M.2
Jauregui, R.3
Airoldi, C.A.4
Smaczniak, C.5
Krajewski, P.6
Angenent, G.C.7
-
10
-
-
30344478870
-
A global map of p53 transcription-factor binding sites in the human genome
-
DOI 10.1016/j.cell.2005.10.043, PII S0092867405013991
-
A global map of p53 transcription-factor binding sites in the human genome. Wei CL Wu Q, Vega VB Chiu KP, Ng P Zhang T, Shahab A Yong HC, Fu Y Weng Z, Liu J Zhao XD, Chew JL Lee YL, Kuznetsov VA Sung WK, Miller LD Lim B, Liu ET Yu Q, Ng HH Ruan Y, Cell 2006 124 207 219 10.1016/j.cell.2005.10.043 16413492 (Pubitemid 43069320)
-
(2006)
Cell
, vol.124
, Issue.1
, pp. 207-219
-
-
Wei, C.-L.1
Wu, Q.2
Vega, V.B.3
Chiu, K.P.4
Ng, P.5
Zhang, T.6
Shahab, A.7
Yong, H.C.8
Fu, Y.9
Weng, Z.10
Liu, J.11
Zhao, X.D.12
Chew, J.-L.13
Lee, Y.L.14
Kuznetsov, V.A.15
Sung, W.-K.16
Miller, L.D.17
Lim, B.18
Liu, E.T.19
Yu, Q.20
Ng, H.-H.21
Ruan, Y.22
more..
-
11
-
-
34250332235
-
Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies
-
10.1101/gr.5583007. 17568005
-
Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies. Euskirchen GM Rozowsky JS, Wei CL Lee WH, Zhang ZD Hartman S, Emanuelsson O Stolc V, Weissman S Gerstein MB, Ruan Y Snyder M, Genome Res 2007 17 898 909 10.1101/gr.5583007 17568005
-
(2007)
Genome Res
, vol.17
, pp. 898-909
-
-
Euskirchen, G.M.1
Rozowsky, J.S.2
Wei, C.L.3
Lee, W.H.4
Zhang, Z.D.5
Hartman, S.6
Emanuelsson, O.7
Stolc, V.8
Weissman, S.9
Gerstein, M.B.10
Ruan, Y.11
Snyder, M.12
-
13
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
10.1186/gb-2009-10-3-r25
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Langmead B Trapnell C, Pop M Salzberg SL, Genome Biology 2008 10 25 10.1186/gb-2009-10-3-r25
-
(2008)
Genome Biology
, vol.10
, pp. 1825
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
14
-
-
52649132425
-
Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data
-
10.1093/nar/gkn488. 18684996
-
Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. Jothi R Cuddapah S, Barski A Cui K, Zhao K, Nucleic Acids Res 2008 36 5221 5231 10.1093/nar/gkn488 18684996
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 5221-5231
-
-
Jothi, R.1
Cuddapah, S.2
Barski, A.3
Cui, K.4
Zhao, K.5
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