-
1
-
-
84944953505
-
-
Climate change 2014. Synthesis report
-
Intergovernmental Panel on Climate Change. Climate change 2014. Synthesis report 2014.
-
(2014)
-
-
-
2
-
-
84944953506
-
Guidelines for National Greenhouse Gas Inventories 2006
-
Agriculture, Forestry and Other Land Use
-
Intergovernmental Panel on Climate Change. Guidelines for National Greenhouse Gas Inventories 2006 Vol. 4 Agriculture, Forestry and Other Land Use.
-
, vol.4
-
-
-
4
-
-
77952524936
-
The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions
-
Leahy SC, Kelly WJ, Altermann E, Ronimus RS, Yeoman CJ, Pacheco DM, et al. The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions. PLoS One. 2010;5:e8926.
-
(2010)
PLoS One
, vol.5
, pp. e8926
-
-
Leahy, S.C.1
Kelly, W.J.2
Altermann, E.3
Ronimus, R.S.4
Yeoman, C.J.5
Pacheco, D.M.6
-
5
-
-
77951221055
-
Methane mitigation in ruminants: from microbe to the farm scale
-
Martin C, Morgavi DP, Doreau M. Methane mitigation in ruminants: from microbe to the farm scale. Animal. 2010;4:351-65.
-
(2010)
Animal
, vol.4
, pp. 351-365
-
-
Martin, C.1
Morgavi, D.P.2
Doreau, M.3
-
7
-
-
84879182023
-
The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptation
-
Hayes BJ, Lewin HA, Goddard ME. The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptation. Trends Genet. 2013;29:206-14.
-
(2013)
Trends Genet
, vol.29
, pp. 206-214
-
-
Hayes, B.J.1
Lewin, H.A.2
Goddard, M.E.3
-
8
-
-
34249857891
-
Cattle selected for lower residual feed intake have reduced daily methane production
-
Hegarty RS, Goopy JP, Herd RM, McCorkell B. Cattle selected for lower residual feed intake have reduced daily methane production. J Anim Sci. 2007;85:1479-86.
-
(2007)
J Anim Sci
, vol.85
, pp. 1479-1486
-
-
Hegarty, R.S.1
Goopy, J.P.2
Herd, R.M.3
McCorkell, B.4
-
9
-
-
0031685510
-
Biochemistry of methanogenesis: a tribute to Marjory Stephenson. 1998 Marjory Stephenson Prize Lecture
-
Thauer RK. Biochemistry of methanogenesis: a tribute to Marjory Stephenson. 1998 Marjory Stephenson Prize Lecture. Microbiology. 1998;144:2377-406.
-
(1998)
Microbiology
, vol.144
, pp. 2377-2406
-
-
Thauer, R.K.1
-
10
-
-
0014157497
-
Hydrogen as an intermediate in the rumen fermentation
-
Hungate RE. Hydrogen as an intermediate in the rumen fermentation. Archiv Mikrobiol. 1967;59:158-64.
-
(1967)
Archiv Mikrobiol
, vol.59
, pp. 158-164
-
-
Hungate, R.E.1
-
11
-
-
84874628087
-
Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen
-
Poulsen M, Schwab C, Jensen BB, Engberg RM, Spang A, Canibe N, et al. Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen. Nature Commun. 2013;4:1428.
-
(2013)
Nature Commun
, vol.4
, pp. 1428
-
-
Poulsen, M.1
Schwab, C.2
Jensen, B.B.3
Engberg, R.M.4
Spang, A.5
Canibe, N.6
-
12
-
-
28644438257
-
Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora
-
Ferrer M, Golyshina OV, Chernikova TN, Khachane AN, Reyes-Duarte D, Santos VAPMD, et al. Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora. Environ Microbiol. 2005;7:1996-2010.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1996-2010
-
-
Ferrer, M.1
Golyshina, O.V.2
Chernikova, T.N.3
Khachane, A.N.4
Reyes-Duarte, D.5
Santos, V.A.P.M.D.6
-
13
-
-
60549114321
-
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
-
Brulc JM, Antonopoulos DA, Miller MEB, Wilson MK, Yannarell AC, Dinsdale EA, et al. Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases. Proc Natl Acad Sci U S A. 2009;106:1948-53.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 1948-1953
-
-
Brulc, J.M.1
Antonopoulos, D.A.2
Miller, M.E.B.3
Wilson, M.K.4
Yannarell, A.C.5
Dinsdale, E.A.6
-
14
-
-
79251587455
-
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
-
Hess M, Sczyrba A, Egan R, Kim T-W, Chokhawala H, Schroth G, et al. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science. 2011;331:463-7.
-
(2011)
Science
, vol.331
, pp. 463-467
-
-
Hess, M.1
Sczyrba, A.2
Egan, R.3
Kim, T.-W.4
Chokhawala, H.5
Schroth, G.6
-
15
-
-
84856254288
-
Cloning and characterization of two β-glucosidase/xylosidase enzymes from yak rumen metagenome
-
Bao L, Huang Q, Chang L, Sun Q, Zhou J, Lu H. Cloning and characterization of two β-glucosidase/xylosidase enzymes from yak rumen metagenome. Appl Biochem Biotechnol. 2012;166:72-86.
-
(2012)
Appl Biochem Biotechnol
, vol.166
, pp. 72-86
-
-
Bao, L.1
Huang, Q.2
Chang, L.3
Sun, Q.4
Zhou, J.5
Lu, H.6
-
16
-
-
84878401406
-
Characterisation of two bifunctional cellulase-xylanase enzymes isolated from a bovine rumen metagenome library
-
Rashamuse KJ, Visser DF, Hennessy F, Kemp J, Roux-van der Merwe MP, Badenhorst J, et al. Characterisation of two bifunctional cellulase-xylanase enzymes isolated from a bovine rumen metagenome library. Curr Microbiol. 2013;66:145-51.
-
(2013)
Curr Microbiol
, vol.66
, pp. 145-151
-
-
Rashamuse, K.J.1
Visser, D.F.2
Hennessy, F.3
Kemp, J.4
Roux-van der Merwe, M.P.5
Badenhorst, J.6
-
17
-
-
84898846091
-
Biochemical and kinetic characterization of the multifunctional β-glucosidase/β-xylosidase/aα-arabinosidase, Bgxa1
-
Gruninger RJ, Gong X, Forster RJ, McAllister TA. Biochemical and kinetic characterization of the multifunctional β-glucosidase/β-xylosidase/aα-arabinosidase, Bgxa1. Appl Microbiol Biotechnol. 2014;98:3003-12.
-
(2014)
Appl Microbiol Biotechnol
, vol.98
, pp. 3003-3012
-
-
Gruninger, R.J.1
Gong, X.2
Forster, R.J.3
McAllister, T.A.4
-
18
-
-
67349209546
-
Isolation and biochemical characterization of two lipases from a metagenomic library of China Holstein cow rumen
-
Liu K, Wang J, Bu D, Zhao S, McSweeney C, Yu P, et al. Isolation and biochemical characterization of two lipases from a metagenomic library of China Holstein cow rumen. Biochem Biophys Res Commun. 2009;385:605-11.
-
(2009)
Biochem Biophys Res Commun
, vol.385
, pp. 605-611
-
-
Liu, K.1
Wang, J.2
Bu, D.3
Zhao, S.4
McSweeney, C.5
Yu, P.6
Li, D.7
-
19
-
-
84930959486
-
Isolation and characterization of novel lipases/esterases from a bovine rumen metagenome
-
PMID: 25575887.
-
Privé F, Newbold CJ, Kaderbhai NN, Girdwood SG, Golyshina OV, Golyshin PN, et al. Isolation and characterization of novel lipases/esterases from a bovine rumen metagenome. Appl Microbiol Biotechnol 2015; PMID: 25575887.
-
(2015)
Appl Microbiol Biotechnol
-
-
Privé, F.1
Newbold, C.J.2
Kaderbhai, N.N.3
Girdwood, S.G.4
Golyshina, O.V.5
Golyshin, P.N.6
-
20
-
-
84865169267
-
Metagenomic analysis of virulence-associated and antibiotic resistance genes of microbes in rumen of Indian buffalo (Bubalus bubalis)
-
Singh KM, Jakhesara SJ, Koringa PG, Rank DN, Joshi CG. Metagenomic analysis of virulence-associated and antibiotic resistance genes of microbes in rumen of Indian buffalo (Bubalus bubalis). Gene. 2012;507:146-51.
-
(2012)
Gene
, vol.507
, pp. 146-151
-
-
Singh, K.M.1
Jakhesara, S.J.2
Koringa, P.G.3
Rank, D.N.4
Joshi, C.G.5
-
21
-
-
33747340215
-
Novel polyphenol oxidase mined from a metagenome expression library of bovine rumen: biochemical properties, structural analysis, and phylogenetic relationships
-
Beloqui A, Pita M, Polaina J, Martínez-Arias A, Golyshina OV, Zumárraga M, et al. Novel polyphenol oxidase mined from a metagenome expression library of bovine rumen: biochemical properties, structural analysis, and phylogenetic relationships. J Biol Chem. 2006;281:22933-42.
-
(2006)
J Biol Chem
, vol.281
, pp. 22933-22942
-
-
Beloqui, A.1
Pita, M.2
Polaina, J.3
Martínez-Arias, A.4
Golyshina, O.V.5
Zumárraga, M.6
-
22
-
-
84855271565
-
Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
-
Berg Miller ME, Yeoman CJ, Chia N, Tringe SG, Angly FE, Edwards RA, et al. Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome. Environ Microbiol. 2012;14:207-27.
-
(2012)
Environ Microbiol
, vol.14
, pp. 207-227
-
-
Berg Miller, M.E.1
Yeoman, C.J.2
Chia, N.3
Tringe, S.G.4
Angly, F.E.5
Edwards, R.A.6
-
23
-
-
84901410187
-
Metasecretome-selective phage display approach for mining the functional potential of a rumen microbial community
-
Ciric M, Moon CD, Leahy SC, Creevey CJ, Altermann E, Attwood GT, et al. Metasecretome-selective phage display approach for mining the functional potential of a rumen microbial community. BMC Genomics. 2014;15:356.
-
(2014)
BMC Genomics
, vol.15
, pp. 356
-
-
Ciric, M.1
Moon, C.D.2
Leahy, S.C.3
Creevey, C.J.4
Altermann, E.5
Attwood, G.T.6
-
24
-
-
84905387976
-
Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome
-
Shi W, Moon CD, Leahy SC, Kang D, Froula J, Kittelmann S, et al. Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome. Genome Res. 2014;24:1517-25.
-
(2014)
Genome Res
, vol.24
, pp. 1517-1525
-
-
Shi, W.1
Moon, C.D.2
Leahy, S.C.3
Kang, D.4
Froula, J.5
Kittelmann, S.6
-
25
-
-
84882921441
-
Investigating the effect of two methane-mitigating diets on the rumen microbiome using massively parallel sequencing
-
Ross EM, Moate PJ, Marett L, Cocks BG, Hayes BJ. Investigating the effect of two methane-mitigating diets on the rumen microbiome using massively parallel sequencing. J Dairy Sci. 2013;96:6030-46.
-
(2013)
J Dairy Sci
, vol.96
, pp. 6030-6046
-
-
Ross, E.M.1
Moate, P.J.2
Marett, L.3
Cocks, B.G.4
Hayes, B.J.5
-
26
-
-
18244421111
-
Effect of coconut oil and defaunation treatment on methanogenesis in sheep
-
Machmüller A, Soliva CR, Kreuzer M. Effect of coconut oil and defaunation treatment on methanogenesis in sheep. Reprod Nutr Devel. 2003;43:41-55.
-
(2003)
Reprod Nutr Devel
, vol.43
, pp. 41-55
-
-
Machmüller, A.1
Soliva, C.R.2
Kreuzer, M.3
-
27
-
-
70349908270
-
Assessment of the microbial ecology of ruminal methanogens in cattle with different feed efficiencies
-
Zhou M, Hernandez-Sanabria E, Guan LL. Assessment of the microbial ecology of ruminal methanogens in cattle with different feed efficiencies. Appl Environ Microbiol. 2009;75:6524-33.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 6524-6533
-
-
Zhou, M.1
Hernandez-Sanabria, E.2
Guan, L.L.3
-
28
-
-
79958772906
-
Effect of fibre- and starch-rich finishing diets on methanogenic Archaea diversity and activity in the rumen of feedlot bulls
-
Popova M, Martin C, Eugène M, Mialon MM, Doreau M, Morgavi DP. Effect of fibre- and starch-rich finishing diets on methanogenic Archaea diversity and activity in the rumen of feedlot bulls. Anim Feed Sci Technol. 2011;166-167:113-21.
-
(2011)
Anim Feed Sci Technol
, vol.166-167
, pp. 113-121
-
-
Popova, M.1
Martin, C.2
Eugène, M.3
Mialon, M.M.4
Doreau, M.5
Morgavi, D.P.6
-
29
-
-
84903763709
-
Hydrogen and methane emissions from beef cattle and their rumen microbial community vary with diet, time after feeding and genotype
-
Rooke JA, Wallace RJ, Duthie C-A, McKain N, de Souza SM, Hyslop JJ, et al. Hydrogen and methane emissions from beef cattle and their rumen microbial community vary with diet, time after feeding and genotype. Br J Nutr. 2014;112:398-407.
-
(2014)
Br J Nutr
, vol.112
, pp. 398-407
-
-
Rooke, J.A.1
Wallace, R.J.2
Duthie, C.-A.3
McKain, N.4
Souza, S.M.5
Hyslop, J.J.6
-
30
-
-
84905460058
-
Archaeal abundance in post-mortem ruminal digesta may help predict methane emissions from beef cattle
-
Wallace RJ, Rooke JA, Duthie C-A, Hyslop JJ, Ross DW, McKain N, et al. Archaeal abundance in post-mortem ruminal digesta may help predict methane emissions from beef cattle. Sci Rep. 2014;4:5892.
-
(2014)
Sci Rep
, vol.4
, pp. 5892
-
-
Wallace, R.J.1
Rooke, J.A.2
Duthie, C.-A.3
Hyslop, J.J.4
Ross, D.W.5
McKain, N.6
-
31
-
-
33749223143
-
The Kyoto encyclopedia of genes and genomes-KEGG
-
Wixon J, Kell D. The Kyoto encyclopedia of genes and genomes-KEGG. Yeast. 2000;17:48-55.
-
(2000)
Yeast
, vol.17
, pp. 48-55
-
-
Wixon, J.1
Kell, D.2
-
32
-
-
0026052565
-
Enzymology of the acetyl-CoA pathway of CO2 fixation
-
Ragsdale SW. Enzymology of the acetyl-CoA pathway of CO2 fixation. Crit Rev Biochem Molr Biology. 1991;26:261-300.
-
(1991)
Crit Rev Biochem Molr Biology
, vol.26
, pp. 261-300
-
-
Ragsdale, S.W.1
-
33
-
-
0037131241
-
A Ni-Fe-Cu center in a bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase
-
Doukov TI, Iverson TM, Seravalli J, Ragsdale SW, Drennan CL. A Ni-Fe-Cu center in a bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase. Science. 2002;298:567-72.
-
(2002)
Science
, vol.298
, pp. 567-572
-
-
Doukov, T.I.1
Iverson, T.M.2
Seravalli, J.3
Ragsdale, S.W.4
Drennan, C.L.5
-
34
-
-
78650355798
-
Functional gene analysis suggests different acetogen populations in the bovine rumen and tammar wallaby forestomach
-
Gagen EJ, Denman SE, Padmanabha J, Zadbuke S, Al Jassim R, Morrison M, et al. Functional gene analysis suggests different acetogen populations in the bovine rumen and tammar wallaby forestomach. Appl Environl Microbiol. 2010;76:7785-95.
-
(2010)
Appl Environl Microbiol
, vol.76
, pp. 7785-7795
-
-
Gagen, E.J.1
Denman, S.E.2
Padmanabha, J.3
Zadbuke, S.4
Al Jassim, R.5
Morrison, M.6
McSweeney, C.S.7
-
35
-
-
84858077472
-
The Pfam protein families database
-
Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, et al. The Pfam protein families database. Nucl Acids Res. 2012;40(Database issue):D290-301.
-
(2012)
Nucl Acids Res
, vol.40
, Issue.DATABASE ISSUE
, pp. D290-301
-
-
Punta, M.1
Coggill, P.C.2
Eberhardt, R.Y.3
Mistry, J.4
Tate, J.5
Boursnell, C.6
-
36
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990;215:403-10.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
37
-
-
84886013737
-
Meta4: a web application for sharing and annotating metagenomic gene predictions using web services
-
Richardson EJ, Escalettes F, Fotheringham I, Wallace RJ, Watson M. Meta4: a web application for sharing and annotating metagenomic gene predictions using web services. Frontiers Genet. 2013;4:168.
-
(2013)
Frontiers Genet
, vol.4
, pp. 168
-
-
Richardson, E.J.1
Escalettes, F.2
Fotheringham, I.3
Wallace, R.J.4
Watson, M.5
-
38
-
-
0017129465
-
Rates of production of methane in the rumen and large intestine of sheep
-
Murray RM, Bryant AM, Leng RA. Rates of production of methane in the rumen and large intestine of sheep. Br J Nutr. 1976;36:1-14.
-
(1976)
Br J Nutr
, vol.36
, pp. 1-14
-
-
Murray, R.M.1
Bryant, A.M.2
Leng, R.A.3
-
39
-
-
77953627328
-
Characterization of variation in rumen methanogenic communities under different dietary and host feed efficiency conditions, as determined by PCR-denaturing gradient gel electrophoresis analysis
-
Zhou M, Hernandez-Sanabria E, Guan LL. Characterization of variation in rumen methanogenic communities under different dietary and host feed efficiency conditions, as determined by PCR-denaturing gradient gel electrophoresis analysis. Appl Environ Microbiol. 2010;76:3776-86.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 3776-3786
-
-
Zhou, M.1
Hernandez-Sanabria, E.2
Guan, L.L.3
-
40
-
-
47549119041
-
Methanogenic archaea: ecologically relevant differences in energy conservation
-
Thauer RK, Kaster A-K, Seedorf H, Buckel W, Hedderich R. Methanogenic archaea: ecologically relevant differences in energy conservation. Nature Rev Microbiol. 2008;6:579-91.
-
(2008)
Nature Rev Microbiol
, vol.6
, pp. 579-591
-
-
Thauer, R.K.1
Kaster, A.-K.2
Seedorf, H.3
Buckel, W.4
Hedderich, R.5
-
41
-
-
45749140542
-
Structure of the archaeal community of the rumen
-
Janssen PH, Kirs M. Structure of the archaeal community of the rumen. Appl Environ Microbiol. 2008;74:3619-25.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 3619-3625
-
-
Janssen, P.H.1
Kirs, M.2
-
42
-
-
0028234206
-
The energetics of bacterial growth: a reassessment
-
Neijssel OM, Teixeira de Mattos MJ. The energetics of bacterial growth: a reassessment. Mol Microbiol. 1994;13:172-82.
-
(1994)
Mol Microbiol
, vol.13
, pp. 172-182
-
-
Neijssel, O.M.1
Teixeira de Mattos, M.J.2
-
43
-
-
0020133613
-
Microbial ecology and activities in the rumen: Part II
-
Hobson PN, Wallace RJ. Microbial ecology and activities in the rumen: Part II. Critical Rev Microbiol. 1982;9:253-320.
-
(1982)
Critical Rev Microbiol
, vol.9
, pp. 253-320
-
-
Hobson, P.N.1
Wallace, R.J.2
-
44
-
-
77956805335
-
Bioenergetics and transport in methanogens and related thermophilic archaea
-
In: Kates M, Kushner DJ, Matheson AT, editors. The biochemistry of archaea (archaebacteria). London: Elsevier Science Publishers
-
Schönheit P. Bioenergetics and transport in methanogens and related thermophilic archaea. In: Kates M, Kushner DJ, Matheson AT, editors. The biochemistry of archaea (archaebacteria). London: Elsevier Science Publishers; 1993. p. 113-72.
-
(1993)
, pp. 113-172
-
-
Schönheit, P.1
-
45
-
-
77956010576
-
Influence of hydrogen on rumen methane formation and fermentation balances through microbial growth kinetics and fermentation thermodynamics
-
Janssen PH. Influence of hydrogen on rumen methane formation and fermentation balances through microbial growth kinetics and fermentation thermodynamics. Anim Feed Sci Technol. 2010;160:1-22.
-
(2010)
Anim Feed Sci Technol
, vol.160
, pp. 1-22
-
-
Janssen, P.H.1
-
46
-
-
84863697442
-
Community structure analysis of methanogens associated with rumen protozoa reveals bias in universal archaeal primers
-
Tymensen LD, McAllister TA. Community structure analysis of methanogens associated with rumen protozoa reveals bias in universal archaeal primers. Appl Environ Microbiol. 2012;78:4051-6.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 4051-4056
-
-
Tymensen, L.D.1
McAllister, T.A.2
-
47
-
-
84873684861
-
Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities
-
Kittelmann S, Seedorf H, Walters WA, Clemente JC, Knight R, Gordon JI, et al. Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities. PLoS One. 2013;8:e47879.
-
(2013)
PLoS One
, vol.8
, pp. e47879
-
-
Kittelmann, S.1
Seedorf, H.2
Walters, W.A.3
Clemente, J.C.4
Knight, R.5
Gordon, J.I.6
Janssen, P.H.7
-
49
-
-
84905366346
-
Two different bacterial community types are linked with the low-methane emission trait in sheep
-
Kittelmann S, Pinares-Patiño CS, Seedorf H, Kirk MR, Ganesh S, McEwan JC, et al. Two different bacterial community types are linked with the low-methane emission trait in sheep. PLoS One. 2014;9:e103171.
-
(2014)
PLoS One
, vol.9
, pp. e103171
-
-
Kittelmann, S.1
Pinares-Patiño, C.S.2
Seedorf, H.3
Kirk, M.R.4
Ganesh, S.5
McEwan, J.C.6
Janssen, P.H.7
-
50
-
-
63849164050
-
Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii
-
Ramirez-Farias C, Slezak K, Fuller Z, Duncan A, Holtrop G, Louis P. Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii. Br J Nutr. 2009;101:541-50.
-
(2009)
Br J Nutr
, vol.101
, pp. 541-550
-
-
Ramirez-Farias, C.1
Slezak, K.2
Fuller, Z.3
Duncan, A.4
Holtrop, G.5
Louis, P.6
-
51
-
-
0003185856
-
The rumen bacteria
-
In: Hobson PN, Stewart CS, editors. London: Chapman and Hall
-
Stewart CS, Flint HJ, Bryant MP. The rumen bacteria. In: Hobson PN, Stewart CS, editors. The rumen microbial ecosystem. London: Chapman and Hall; 1997. p. 10-72.
-
(1997)
The rumen microbial ecosystem
, pp. 10-72
-
-
Stewart, C.S.1
Flint, H.J.2
Bryant, M.P.3
-
52
-
-
79960931485
-
Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies
-
Pope PB, Smith W, Denman SE, Tringe SG, Barry K, Hugenholtz P, et al. Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies. Science. 2011;333:646-8.
-
(2011)
Science
, vol.333
, pp. 646-648
-
-
Pope, P.B.1
Smith, W.2
Denman, S.E.3
Tringe, S.G.4
Barry, K.5
Hugenholtz, P.6
-
53
-
-
77957093212
-
Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores
-
Pope PB, Denman SE, Jones M, Tringe SG, Barry K, Malfatti SA, et al. Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores. Proc Natl Acad Sci. 2010;107:14793-8.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 14793-8
-
-
Pope, P.B.1
Denman, S.E.2
Jones, M.3
Tringe, S.G.4
Barry, K.5
Malfatti, S.A.6
-
54
-
-
0017084743
-
Desulfovibrio of the sheep rumen
-
Howard BH, Hungate RE. Desulfovibrio of the sheep rumen. Appl Microbiol. 1976;32:598-602.
-
(1976)
Appl Microbiol
, vol.32
, pp. 598-602
-
-
Howard, B.H.1
Hungate, R.E.2
-
55
-
-
0016300184
-
Sulfate reduction by a Desulfovibrio species isolated from sheep rumen
-
Huisingh J, McNeill JJ, Matrone G. Sulfate reduction by a Desulfovibrio species isolated from sheep rumen. Appl Microbiol. 1974;28:489-97.
-
(1974)
Appl Microbiol
, vol.28
, pp. 489-497
-
-
Huisingh, J.1
McNeill, J.J.2
Matrone, G.3
-
56
-
-
0009743520
-
Regulation of rumen lactate metabolism and the role of lactic acid in nutritional disorders of ruminants
-
Counotte GHM, Prins RA. Regulation of rumen lactate metabolism and the role of lactic acid in nutritional disorders of ruminants. Vet Sci Commun. 1978;2:277-303.
-
(1978)
Vet Sci Commun
, vol.2
, pp. 277-303
-
-
Counotte, G.H.M.1
Prins, R.A.2
-
57
-
-
77949912689
-
The potential of Megasphaera elsdenii isolates to control ruminal acidosis
-
Henning PH, Horn CH, Steyn DG, Meissner HH, Hagg FM. The potential of Megasphaera elsdenii isolates to control ruminal acidosis. Anim Feed Sci Technol. 2010;157:13-9.
-
(2010)
Anim Feed Sci Technol
, vol.157
, pp. 13-19
-
-
Henning, P.H.1
Horn, C.H.2
Steyn, D.G.3
Meissner, H.H.4
Hagg, F.M.5
-
58
-
-
27844605407
-
Dialister micraerophilus sp. nov. and Dialister propionicifaciens sp. nov., isolated from human clinical samples
-
Jumas-Bilak E, Jean-Pierre H, Carlier J-P, Teyssier C, Bernard K, Gay B, et al. Dialister micraerophilus sp. nov. and Dialister propionicifaciens sp. nov., isolated from human clinical samples. Int J System Evol Microbiol. 2005;55:2471-8.
-
(2005)
Int J System Evol Microbiol
, vol.55
, pp. 2471-2478
-
-
Jumas-Bilak, E.1
Jean-Pierre, H.2
Carlier, J.-P.3
Teyssier, C.4
Bernard, K.5
Gay, B.6
-
59
-
-
0032134062
-
The role of pH in regulating ruminal methane and ammonia production
-
Lana RP, Russell JB, Van Amburgh ME. The role of pH in regulating ruminal methane and ammonia production. J Anim Sci. 1998;76:2190-6.
-
(1998)
J Anim Sci
, vol.76
, pp. 2190-2196
-
-
Lana, R.P.1
Russell, J.B.2
Amburgh, M.E.3
-
60
-
-
0032240058
-
The importance of pH in the regulation of ruminal acetate to propionate ratio and methane production in vitro
-
Russell JB. The importance of pH in the regulation of ruminal acetate to propionate ratio and methane production in vitro. J Dairy Sci. 1998;81:3222-30.
-
(1998)
J Dairy Sci
, vol.81
, pp. 3222-3230
-
-
Russell, J.B.1
-
61
-
-
66249134456
-
Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum 'Synergistetes' isolated from the human oral cavity
-
Downes J, Vartoukian SR, Dewhirst FE, Izard J, Chen T, Yu WH, et al. Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum 'Synergistetes' isolated from the human oral cavity. Int J Syst Evol Microbiol. 2009;59:972-80.
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 972-980
-
-
Downes, J.1
Vartoukian, S.R.2
Dewhirst, F.E.3
Izard, J.4
Chen, T.5
Yu, W.H.6
-
62
-
-
0034122507
-
Description of Mogibacterium pumilum gen. nov., sp. nov. and Mogibacterium vescum gen. nov., sp. nov., and reclassification of Eubacterium timidum (Holdeman et al. 1980) as Mogibacterium timidum gen. nov., comb. nov
-
Nakazawa F, Sato M, Poco SE, Hashimura T, Ikeda T, Kalfas S, et al. Description of Mogibacterium pumilum gen. nov., sp. nov. and Mogibacterium vescum gen. nov., sp. nov., and reclassification of Eubacterium timidum (Holdeman et al. 1980) as Mogibacterium timidum gen. nov., comb. nov. Int J Syst Evol Microbiol. 2000;50:679-88.
-
(2000)
Int J Syst Evol Microbiol
, vol.50
, pp. 679-688
-
-
Nakazawa, F.1
Sato, M.2
Poco, S.E.3
Hashimura, T.4
Ikeda, T.5
Kalfas, S.6
-
64
-
-
84899480182
-
Methanotrophic archaea possessing diverging methane-oxidizing and electron-transporting pathways
-
Wang F-P, Zhang Y, Chen Y, He Y, Qi J, Hinrichs K-U, et al. Methanotrophic archaea possessing diverging methane-oxidizing and electron-transporting pathways. ISME J. 2014;8:1069-78.
-
(2014)
ISME J
, vol.8
, pp. 1069-1078
-
-
Wang, F.-P.1
Zhang, Y.2
Chen, Y.3
He, Y.4
Qi, J.5
Hinrichs, K.-U.6
-
65
-
-
0003610105
-
The analysis of agricultural materials: a manual of the analytical methods used by the Agricultural Development and Advisory Service
-
3rd ed. London: HMSO
-
Ministry of Agriculture Fisheries and Food. The analysis of agricultural materials: a manual of the analytical methods used by the Agricultural Development and Advisory Service. 3rd ed. London: HMSO; 1986.
-
(1986)
-
-
-
66
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol. 2006;72:5069-72.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
-
67
-
-
84940644968
-
A mathematical theory of communication
-
Shannon CE. A mathematical theory of communication. Bell System Technical Journal. 1948;27:379-423.
-
(1948)
Bell System Technical Journal
, vol.27
, pp. 379-423
-
-
Shannon, C.E.1
-
68
-
-
0001463548
-
Nonparametric-estimation of the number of classes in a population
-
Chao A. Nonparametric-estimation of the number of classes in a population. Scand J Statist 1984;11:265-70.
-
(1984)
Scand J Statist
, vol.11
, pp. 265-270
-
-
Chao, A.1
-
69
-
-
0000295654
-
PLS for multivariate linear modelling
-
In: van de Waterbeemd H, editor. Chemometric Methods in Molecular Design. Weinheim: VCH
-
Wold S. PLS for multivariate linear modelling. In: van de Waterbeemd H, editor. Chemometric Methods in Molecular Design. Weinheim: VCH; 1994.
-
(1994)
-
-
Wold, S.1
-
70
-
-
84867397631
-
MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads
-
Namiki T, Hachiya T, Tanaka H, Sakakibara Y. MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads. Nucl Acids Res. 2012;40:e155.
-
(2012)
Nucl Acids Res
, vol.40
, pp. e155
-
-
Namiki, T.1
Hachiya, T.2
Tanaka, H.3
Sakakibara, Y.4
-
71
-
-
84901417347
-
Prokka: rapid prokaryotic genome annotation
-
Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014;30:2068-9.
-
(2014)
Bioinformatics
, vol.30
, pp. 2068-2069
-
-
Seemann, T.1
-
72
-
-
77952988108
-
A new generation of homology search tools based on probabilistic inference
-
Eddy SR. A new generation of homology search tools based on probabilistic inference. Genome Inform. 2009;23:205-11.
-
(2009)
Genome Inform
, vol.23
, pp. 205-211
-
-
Eddy, S.R.1
|