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Volumn 76, Issue 23, 2010, Pages 7785-7795

Functional gene analysis suggests different acetogen populations in the bovine rumen and tammar wallaby forestomach

Author keywords

[No Author keywords available]

Indexed keywords

ACETOGENS; ACETYL COENZYME A; ACETYL-COA; AMINO ACID SEQUENCE; COMMUNITY STRUCTURES; FUNCTIONAL GENES; METHANE EMISSIONS; METHANOGENESIS; PCR PRIMERS; SYNTHASE GENE; SYNTHASES; SYNTHETASES;

EID: 78650355798     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01679-10     Document Type: Article
Times cited : (105)

References (52)
  • 3
    • 0017746753 scopus 로고
    • Acetobacterium, a new genus of hydrogen-oxidizing, carbon dioxide-reducing, anaerobic bacteria
    • Balch, W. E., S. Schoberth, R. Tanner, and R. S. Wolfe. 1977. Acetobacterium, a new genus of hydrogen-oxidizing, carbon dioxide-reducing, anaerobic bacteria. Int. J. Syst. Bacteriol. 27:355-361.
    • (1977) Int. J. Syst. Bacteriol. , vol.27 , pp. 355-361
    • Balch, W.E.1    Schoberth, S.2    Tanner, R.3    Wolfe, R.S.4
  • 6
    • 0025880415 scopus 로고
    • Mixotrophy in the termite gut acetogen, Sporomusa termitida
    • Breznak, J. A., and J. S. Blum. 1991. Mixotrophy in the termite gut acetogen, Sporomusa termitida. Arch. Microbiol. 156:105-110.
    • (1991) Arch. Microbiol. , vol.156 , pp. 105-110
    • Breznak, J.A.1    Blum, J.S.2
  • 8
    • 55949131363 scopus 로고    scopus 로고
    • Anaerobic fungal populations
    • In H. P. S. Makkar and C. S. McSweeney (ed.), Springer, Amsterdam, Netherlands
    • Brookman, J. L., and M. J. Nicholson. 2005. Anaerobic fungal populations, p. 139-150. In H. P. S. Makkar and C. S. McSweeney (ed.), Methods in gut microbial ecology for ruminants. Springer, Amsterdam, Netherlands.
    • (2005) Methods in Gut Microbial Ecology for Ruminants , pp. 139-150
    • Brookman, J.L.1    Nicholson., M.J.2
  • 9
    • 84971023674 scopus 로고
    • Microbial activity in the forestomach of free-living macropodid marsupials: Comparisons with laboratory studies
    • Dellow, D. W., I. D. Hume, R. T. J. Clarke, and T. Bauchop. 1988. Microbial activity in the forestomach of free-living macropodid marsupials: Comparisons with laboratory studies. Aust. J. Zool. 36:383-395.
    • (1988) Aust. J. Zool. , vol.36 , pp. 383-395
    • Dellow, D.W.1    Hume, I.D.2    Clarke, R.T.J.3    Bauchop, T.4
  • 10
    • 0037131241 scopus 로고    scopus 로고
    • A Ni-Fe-Cu center in a bifunctional carbon monoxide dehydrogenase/ acetyl-CoA synthase
    • Doukov, T. I., T. M. Iverson, J. Seravalli, S. W. Ragsdale, and C. L. Drennan. 2002. A Ni-Fe-Cu center in a bifunctional carbon monoxide dehydrogenase/ acetyl-CoA synthase. Science 298:567-572.
    • (2002) Science , vol.298 , pp. 567-572
    • Doukov, T.I.1    Iverson, T.M.2    Seravalli, J.3    Ragsdale, S.W.4    Drennan, C.L.5
  • 12
    • 0007810062 scopus 로고
    • The gram-positive non-spore-bearing anaerobic bacilli of human feces
    • Eggerth, A. H. 1935. The gram-positive non-spore-bearing anaerobic bacilli of human feces. J. Bacteriol. 30:277-299.
    • (1935) J. Bacteriol. , vol.30 , pp. 277-299
    • Eggerth, A.H.1
  • 13
    • 64749087385 scopus 로고    scopus 로고
    • Community composition and density of methanogens in the foregut of the tammar wallaby (Macropus eugenii)
    • Evans, P. N., L. A. Hinds, L. Sly, C. S. McSweeney, M. Morrison, and A.-D. G. Wright. 2009. Community composition and density of methanogens in the foregut of the tammar wallaby (Macropus eugenii). Appl. Environ. Microbiol. 75:2598-2602.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 2598-2602
    • Evans, P.N.1    Hinds, L.A.2    Sly, L.3    McSweeney, C.S.4    Morrison, M.5    Wright, A.-D.G.6
  • 14
    • 0028006364 scopus 로고
    • 16S ribosomal DNA sequences of anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov
    • Ezaki, T., N. Li, Y. Hashimoto, H. Miura, and H. Yamamoto. 1994. 16S ribosomal DNA sequences of anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov. Int. J. Syst. Bacteriol. 44:130-136.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 130-136
    • Ezaki, T.1    Li, N.2    Hashimoto, Y.3    Miura, H.4    Yamamoto, H.5
  • 18
    • 0027399530 scopus 로고
    • Identification of protein coding regions by database similarity search
    • Gish, W., and D. J. States. 1993. Identification of protein coding regions by database similarity search. Nat. Genet. 3:266-272.
    • (1993) Nat. Genet. , vol.3 , pp. 266-272
    • Gish, W.1    States, D.J.2
  • 19
    • 0024569475 scopus 로고
    • Enrichment and isolation of Acetitomaculum ruminis, gen. nov., sp. nov.: Acetogenic bacteria from the bovine rumen
    • Greening, R. C., and J. A. Z. Leedle. 1989. Enrichment and isolation of Acetitomaculum ruminis, gen. nov., sp. nov.: Acetogenic bacteria from the bovine rumen. Arch. Microbiol. 151:399-406.
    • (1989) Arch. Microbiol. , vol.151 , pp. 399-406
    • Greening, R.C.1    Leedle, J.A.Z.2
  • 20
    • 77950226313 scopus 로고    scopus 로고
    • Presence of novel, potentially homoacetogenic bacteria in the rumen as determined by analysis of formyltetrahydrofolate synthetase sequences from ruminants
    • Henderson, G., G. E. Naylor, S. C. Leahy, and P. H. Janssen. 2010. Presence of novel, potentially homoacetogenic bacteria in the rumen as determined by analysis of formyltetrahydrofolate synthetase sequences from ruminants. Appl. Environ. Microbiol. 76:2058-2066.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 2058-2066
    • Henderson, G.1    Naylor, G.E.2    Leahy, S.C.3    Janssen, P.H.4
  • 21
    • 77956868541 scopus 로고
    • A roll tube method for cultivation of strict anaerobes
    • In J. R. Norris and D. W. Ribbons (ed.), Academic Press, Inc., New York, NY
    • Hungate, R. E. 1969. A roll tube method for cultivation of strict anaerobes, p. 117-132. In J. R. Norris and D. W. Ribbons (ed.), Methods in microbiology, vol. 3B. Academic Press, Inc., New York, NY.
    • (1969) Methods in Microbiology , vol.3 B , pp. 117-132
    • Hungate, R.E.1
  • 22
    • 0032694712 scopus 로고    scopus 로고
    • Ruminal acetogens and their potential to lower ruminant methane emissions
    • Joblin, K. N. 1999. Ruminal acetogens and their potential to lower ruminant methane emissions. Aust. J. Agric. Res. 50:1307-1313.
    • (1999) Aust. J. Agric. Res. , vol.50 , pp. 1307-1313
    • Joblin, K.N.1
  • 23
    • 0029349473 scopus 로고
    • Methane emissions from cattle
    • Johnson, K. A., and D. E. Johnson. 1995. Methane emissions from cattle. J. Anim. Sci. 73:2483-2492.
    • (1995) J. Anim. Sci. , vol.73 , pp. 2483-2492
    • Johnson, K.A.1    Johnson, D.E.2
  • 24
    • 0026690571 scopus 로고
    • A new approach to protein fold recognition
    • Jones, D. T., W. R. Taylor, and J. M. Thornton. 1992. A new approach to protein fold recognition. Nature 358:86-89.
    • (1992) Nature , vol.358 , pp. 86-89
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 25
    • 0016977794 scopus 로고
    • Methane production and digestibility measurements in the grey kangaroo and sheep
    • Kempton, T. J., R. M. Murray, and R. A. Leng. 1976. Methane production and digestibility measurements in the grey kangaroo and sheep. Aust. J. Biol. Sci. 29:209-214.
    • (1976) Aust. J. Biol. Sci. , vol.29 , pp. 209-214
    • Kempton, T.J.1    Murray, R.M.2    Leng, R.A.3
  • 26
    • 0022349102 scopus 로고
    • Clostridium pfennigii sp. nov. uses methoxyl groups of monobenenzoids and produces butyrate
    • Krumholz, L. R., and M. P. Bryant. 1985. Clostridium pfennigii sp. nov. uses methoxyl groups of monobenenzoids and produces butyrate. Int. J. Syst. Bacteriol. 35:454-456.
    • (1985) Int. J. Syst. Bacteriol. , vol.35 , pp. 454-456
    • Krumholz, L.R.1    Bryant, M.P.2
  • 27
    • 0022642593 scopus 로고
    • Syntrophococcus sucromutans sp. nov. gen. nov. uses carbohydrates as electron donors and formate, methoxymonobenzenoids or Methanobrevibacter as electron acceptor system
    • Krumholz, L. R., and M. P. Bryant. 1986. Syntrophococcus sucromutans sp. nov. gen. nov. uses carbohydrates as electron donors and formate, methoxymonobenzenoids or Methanobrevibacter as electron acceptor system. Arch. Microbiol. 143:313-318.
    • (1986) Arch. Microbiol. , vol.143 , pp. 313-318
    • Krumholz, L.R.1    Bryant, M.P.2
  • 28
    • 0035286628 scopus 로고    scopus 로고
    • Recovery and analysis of formyltetrahydrofolate synthetase gene sequences from natural populations of acetogenic bacteria
    • Leaphart, A. B., and C. R. Lovell. 2001. Recovery and analysis of formyltetrahydrofolate synthetase gene sequences from natural populations of acetogenic bacteria. Appl. Environ. Microbiol. 67:1392-1395.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1392-1395
    • Leaphart, A.B.1    Lovell, C.R.2
  • 29
    • 0037133256 scopus 로고    scopus 로고
    • The Ni-containing carbon monoxide dehydrogenase family: Light at the end of the tunnel?
    • Lindahl, P. A. 2002. The Ni-containing carbon monoxide dehydrogenase family: light at the end of the tunnel? Biochemistry 41:2097-2105.
    • (2002) Biochemistry , vol.41 , pp. 2097-2105
    • Lindahl, P.A.1
  • 31
    • 0026739804 scopus 로고
    • Isolation and characterization of an anaerobic chlorophenol-transforming bacterium
    • Madsen, T., and D. Licht. 1992. Isolation and characterization of an anaerobic chlorophenol-transforming bacterium. Appl. Environ. Microbiol. 58: 2874-2878.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 2874-2878
    • Madsen, T.1    Licht, D.2
  • 32
    • 58149083157 scopus 로고    scopus 로고
    • Diversity of the formyltetrahydrofolate synthetase gene (fhs) a key enzyme for reductive acetogenesis, in the bovine rumen
    • Matsui, H., N. Kojima, and K. Tajima. 2008. Diversity of the formyltetrahydrofolate synthetase gene (fhs) a key enzyme for reductive acetogenesis, in the bovine rumen. Biosci. Biotechnol. Biochem. 72:3273-3276.
    • (2008) Biosci. Biotechnol. Biochem. , vol.72 , pp. 3273-3276
    • Matsui, H.1    Kojima, N.2    Tajima, K.3
  • 33
    • 0018364444 scopus 로고
    • Anaerobic bacterium that degrades fatty acids in syntrophic association with methanogens
    • McInerney, M. J., M. P. Bryant, and N. Pfennig. 1979. Anaerobic bacterium that degrades fatty acids in syntrophic association with methanogens. Arch. Microbiol. 122:129-135.
    • (1979) Arch. Microbiol. , vol.122 , pp. 129-135
    • McInerney, M.J.1    Bryant, M.P.2    Pfennig, N.3
  • 34
    • 0026327185 scopus 로고
    • The primary structure of the subunits of carbon monoxide dehydrogenase/acetyl-CoA synthase from Clostridium thermoaceticum
    • Morton, T. A., J. A. Runquist, S. W. Ragsdale, T. Shanmugasundaram, H. G. Wood, and L. G. Ljungdahl. 1991. The primary structure of the subunits of carbon monoxide dehydrogenase/acetyl-CoA synthase from Clostridium thermoaceticum. J. Biol. Chem. 266:23824-23828.
    • (1991) J. Biol. Chem. , vol.266 , pp. 23824-23828
    • Morton, T.A.1    Runquist, J.A.2    Ragsdale, S.W.3    Shanmugasundaram, T.4    Wood, H.G.5    Ljungdahl, L.G.6
  • 35
    • 0346346253 scopus 로고    scopus 로고
    • Methane production by ruminants: Its contribution to global warming
    • Moss, A. R., J.-P. Jouany, and J. Newbold. 2000. Methane production by ruminants: Its contribution to global warming. Ann. Zootech. 49:231-253.
    • (2000) Ann. Zootech. , vol.49 , pp. 231-253
    • Moss, A.R.1    Jouany, J.-P.2    Newbold, J.3
  • 36
    • 0028001638 scopus 로고
    • Digestion of herring by indigenous bacteria in the minke whale forestomach
    • Olsen, M. A., T. H. Aagnes, and S. D. Mathiesen. 1994. Digestion of herring by indigenous bacteria in the minke whale forestomach. Appl. Environ. Microbiol. 60:4445-4455.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 4445-4455
    • Olsen, M.A.1    Aagnes, T.H.2    Mathiesen, S.D.3
  • 38
    • 0030791876 scopus 로고    scopus 로고
    • The eastern and western branches of the Wood/ Ljungdahl pathway: How the east and west were won
    • Ragsdale, S. W. 1997. The eastern and western branches of the Wood/ Ljungdahl pathway: how the east and west were won. Biofactors 6:3-11.
    • (1997) Biofactors , vol.6 , pp. 3-11
    • Ragsdale, S.W.1
  • 40
    • 0031839158 scopus 로고    scopus 로고
    • Isolation from the rumen of a new acetogenic bacterium phylogenetically closely related to Clostridium difficile
    • Rieu-Lesme, F., C. Dauga, G. Fonty, and J. Dore. 1998. Isolation from the rumen of a new acetogenic bacterium phylogenetically closely related to Clostridium difficile. Anaerobe 4:89-94.
    • (1998) Anaerobe , vol.4 , pp. 89-94
    • Rieu-Lesme, F.1    Dauga, C.2    Fonty, G.3    Dore, J.4
  • 42
    • 0021946887 scopus 로고
    • Restriction and modification enzymes and their recognition sequences
    • Roberts, R. J. 1985. Restriction and modification enzymes and their recognition sequences. Nucleic Acids Res. 13(Suppl.):r165-r200.
    • (1985) Nucleic Acids Res. , vol.13 , Issue.SUPPL.
    • Roberts, R.J.1
  • 43
    • 0025267792 scopus 로고
    • The general stochastic model of nucleotide substitution
    • Rodriguez, F., J. Oliver, A. Marin, and J. Medina. 1990. The general stochastic model of nucleotide substitution. J. Theor. Biol. 142:485-501.
    • (1990) J. Theor. Biol. , vol.142 , pp. 485-501
    • Rodriguez, F.1    Oliver, J.2    Marin, A.3    Medina, J.4
  • 46
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 48
    • 63149114328 scopus 로고    scopus 로고
    • Enteric fermentation and ruminant eructation: The role (and control?) of methane in the climate change debate
    • Thorpe, A. 2009. Enteric fermentation and ruminant eructation: the role (and control?) of methane in the climate change debate. Clim. Change 93:407-431.
    • (2009) Clim. Change , vol.93 , pp. 407-431
    • Thorpe, A.1
  • 50
    • 34250599080 scopus 로고
    • The formation of acetic acid from carbon dioxide and hydrogen by anaerobic spore-forming bacteria
    • Wieringa, K. T. 1940. The formation of acetic acid from carbon dioxide and hydrogen by anaerobic spore-forming bacteria. Antonie Van Leeuwenhoek 6:251-262.
    • (1940) Antonie Van Leeuwenhoek , vol.6 , pp. 251-262
    • Wieringa, K.T.1
  • 52
    • 70350234638 scopus 로고    scopus 로고
    • Real-time PCR assays targeting formyltetrahydrofolate synthetase gene to enumerate acetogens in natural and engineered environments
    • Xu, K., H. Liu, G. Du, and J. Chen. 2009. Real-time PCR assays targeting formyltetrahydrofolate synthetase gene to enumerate acetogens in natural and engineered environments. Anaerobe 15:204-213.
    • (2009) Anaerobe , vol.15 , pp. 204-213
    • Xu, K.1    Liu, H.2    Du, G.3    Chen, J.4


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