-
1
-
-
33845925394
-
Chromatin immunoprecipitation and microarray-based analysis of protein location
-
Lee TI, Johnstone SE, Young RA (2006) Chromatin immunoprecipitation and microarray-based analysis of protein location. Nat Protoc 1: 729-748.
-
(2006)
Nat Protoc
, vol.1
, pp. 729-748
-
-
Lee, T.I.1
Johnstone, S.E.2
Young, R.A.3
-
2
-
-
84856117019
-
A recently evolved transcriptional network controls biofilm development in Candida albicans
-
Nobile CJ et al (2012) A recently evolved transcriptional network controls biofilm development in Candida albicans. Cell 148: 126-138.
-
(2012)
Cell
, vol.148
, pp. 126-138
-
-
Nobile, C.J.1
-
3
-
-
40149098862
-
The evolution of combinatorial gene regulation in fungi
-
Tuch BB et al (2008) The evolution of combinatorial gene regulation in fungi. PLoS Biol 6, e38.
-
(2008)
PLoS Biol
, vol.6
-
-
Tuch, B.B.1
-
4
-
-
84857403915
-
A conserved transcriptional regulator governs fungal morphology in widely diverged species
-
Cain CW et al (2012) A conserved transcriptional regulator governs fungal morphology in widely diverged species. Genetics 190: 511-521.
-
(2012)
Genetics
, vol.190
, pp. 511-521
-
-
Cain, C.W.1
-
5
-
-
84866992765
-
Protein modularity, cooperative binding, and hybrid regulatory States underlie transcriptional network diversification
-
Baker CR et al (2012) Protein modularity, cooperative binding, and hybrid regulatory States underlie transcriptional network diversification. Cell 151: 80-95.
-
(2012)
Cell
, vol.151
, pp. 80-95
-
-
Baker, C.R.1
-
6
-
-
42449127140
-
Temperatureinduced switch to the pathogenic yeast form of Histoplasma capsulatum requires Ryp1, a conserved transcriptional regulator
-
Nguyen VQ, Sil A (2008) Temperatureinduced switch to the pathogenic yeast form of Histoplasma capsulatum requires Ryp1, a conserved transcriptional regulator. Proc Natl Acad Sci U S A 105: 4880-4885.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 4880-4885
-
-
Nguyen, V.Q.1
Sil, A.2
-
7
-
-
84880935706
-
A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen
-
Beyhan S et al (2013) A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen. PLoS Biol 11, e1001614.
-
(2013)
PLoS Biol
, vol.11
-
-
Beyhan, S.1
-
8
-
-
84892889712
-
Regulatory circuits that enable proliferation of the fungus Candida albicans in a mammalian host
-
Pérez JC, Johnson AD (2013) Regulatory circuits that enable proliferation of the fungus Candida albicans in a mammalian host. PLoS Pathog 9, e1003780.
-
(2013)
PLoS Pathog
, vol.9
-
-
Pérez, J.C.1
Johnson, A.D.2
-
9
-
-
84884701244
-
Structure of the transcriptional network controlling white-opaque switching in Candida albicans
-
Hernday AD et al (2013) Structure of the transcriptional network controlling white-opaque switching in Candida albicans. Mol Microbiol 90: 22-35.
-
(2013)
Mol Microbiol
, vol.90
, pp. 22-35
-
-
Hernday, A.D.1
-
10
-
-
77956054182
-
Genetics and molecular biology in Candida albicans
-
Hernday AD et al (2010) Genetics and molecular biology in Candida albicans. Methods Enzymol 470: 737-758.
-
(2010)
Methods Enzymol
, vol.470
, pp. 737-758
-
-
Hernday, A.D.1
-
11
-
-
77951042893
-
MochiView: Versatile software for genome browsing and DNA motif analysis
-
Homann OR, Johnson AD (2010) MochiView: versatile software for genome browsing and DNA motif analysis. BMC Biol 8: 49.
-
(2010)
BMC Biol
, vol.8
, pp. 49
-
-
Homann, O.R.1
Johnson, A.D.2
-
12
-
-
34548100947
-
A novel ensemble learning method for de novo computational identification of DNA binding sites
-
Chakravarty A et al (2007) A novel ensemble learning method for de novo computational identification of DNA binding sites. BMC Bioinformatics 8: 249.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 249
-
-
Chakravarty, A.1
-
13
-
-
0035228215
-
BioProspector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
-
Liu X, Brutlag DL, Liu JS (2001) BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pac Symp Biocomput 127-138.
-
(2001)
Pac Symp Biocomput
, pp. 127-138
-
-
Liu, X.1
Brutlag, D.L.2
Liu, J.S.3
-
14
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
Bailey TL et al (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37: W202-W208.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. W202-W208
-
-
Bailey, T.L.1
-
15
-
-
84891806965
-
The YEASTRACT database: An upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
-
Teixeira MC et al (2014) The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. Nucleic Acids Res 42: D161-D166.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D161-D166
-
-
Teixeira, M.C.1
-
16
-
-
34447506667
-
Quantifying similarity between motifs
-
Gupta S et al (2007) Quantifying similarity between motifs. Genome Biol 8: R24.
-
(2007)
Genome Biol
, vol.8
-
-
Gupta, S.1
-
17
-
-
0036079158
-
The human genome browser at UCSC
-
Kent WJ et al (2002) The human genome browser at UCSC. Genome Res 12: 996-1006.
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
-
18
-
-
55749094855
-
An integrated software system for analyzing ChIP-chip and ChIP-seq data
-
Ji H et al (2008) An integrated software system for analyzing ChIP-chip and ChIP-seq data. Nat Biotechnol 26: 1293-1300.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1293-1300
-
-
Ji, H.1
-
19
-
-
84877316918
-
Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains
-
Lohse MB et al (2013) Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains. Proc Natl Acad Sci U S A 110: 7660-7665.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 7660-7665
-
-
Lohse, M.B.1
-
20
-
-
84887478181
-
Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins
-
Teytelman L et al (2013) Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins. Proc Natl Acad Sci U S A 110: 18602-18607.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 18602-18607
-
-
Teytelman, L.1
-
21
-
-
84872007065
-
A histone deacetylase adjusts transcription kinetics at coding sequences during Candida albicans morphogenesis
-
Hnisz D et al (2013) A histone deacetylase adjusts transcription kinetics at coding sequences during Candida albicans morphogenesis. PLoS Genet 8, e1003118.
-
(2013)
PLoS Genet
, vol.8
-
-
Hnisz, D.1
-
22
-
-
21144439147
-
Assessing computational tools for the discovery of transcription factor binding sites
-
Tompa M et al (2005) Assessing computational tools for the discovery of transcription factor binding sites. Nat Biotechnol 23: 137-144.
-
(2005)
Nat Biotechnol
, vol.23
, pp. 137-144
-
-
Tompa, M.1
-
23
-
-
79956293316
-
Extensive DNA-binding specificity divergence of a conserved transcription regulator
-
Baker CR, Tuch BB, Johnson AD (2011) Extensive DNA-binding specificity divergence of a conserved transcription regulator. Proc Natl Acad Sci U S A 108: 7493-7498.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 7493-7498
-
-
Baker, C.R.1
Tuch, B.B.2
Johnson, A.D.3
-
24
-
-
79551675891
-
The zinc cluster transcription factor Ahr1p directs Mcm1p regulation of Candida albicans adhesion
-
Askew C et al (2011) The zinc cluster transcription factor Ahr1p directs Mcm1p regulation of Candida albicans adhesion. Mol Microbiol 79: 940-953.
-
(2011)
Mol Microbiol
, vol.79
, pp. 940-953
-
-
Askew, C.1
-
25
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon P et al (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-2504.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
-
26
-
-
0034704248
-
Genome-wide location and function of DNA binding proteins
-
Ren B et al (2000) Genome-wide location and function of DNA binding proteins. Science 290: 2306-2309.
-
(2000)
Science
, vol.290
, pp. 2306-2309
-
-
Ren, B.1
-
27
-
-
33745195271
-
Yeast Gal4: A transcriptional paradigm revisited
-
Traven A, Jelicic B, Sopta M (2006) Yeast Gal4: a transcriptional paradigm revisited. EMBO Rep 7: 496-499.
-
(2006)
EMBO Rep
, vol.7
, pp. 496-499
-
-
Traven, A.1
Jelicic, B.2
Sopta, M.3
|