Suboptimization of developmental enhancers

Science

Volumn 350, Issue 6258, 2015, Pages 325-328

  Farley, Emma K ^a,b   Olson, Katrina M ^a,b   Zhang, Wei ^c   Brandt, Alexander J ^a   Rokhsar, Daniel S ^a   Levine, Michael S ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b PRINCETON UNIVERSITY   (United States)

^c UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FIBROBLAST GROWTH FACTOR; TRANSCRIPTION FACTOR ETS; TRANSCRIPTION FACTOR GATA; TRANSCRIPTION FACTOR OTX; TRANSCRIPTION FACTOR OTX A; UNCLASSIFIED DRUG; FAS ASSOCIATED DEATH DOMAIN PROTEIN;

AQUATIC ORGANISM; EMBRYO; GENE EXPRESSION; MOLECULAR ANALYSIS; OPTIMIZATION; PRECISION; TRADE-OFF;

ANIMAL CELL; ANIMAL EXPERIMENT; ARTICLE; BINDING AFFINITY; BINDING SITE; CIONA; CONSENSUS SEQUENCE; CONTROLLED STUDY; EMBRYO; EMBRYO DEVELOPMENT; ENHANCER REGION; GENE CLUSTER; GENE EXPRESSION; HIGH THROUGHPUT SCREENING; MOLECULAR RECOGNITION; NEUROECTODERM; NONHUMAN; PRIORITY JOURNAL; PROTEIN LOCALIZATION; PROTEIN MOTIF; REPORTER GENE; SIGNAL TRANSDUCTION; TRANSCRIPTION REGULATION; ANIMAL; ANTIBODY SPECIFICITY; CIONA INTESTINALIS; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYSIOLOGY;

CIONA;

ANIMALS; BASE SEQUENCE; BINDING SITES; CIONA INTESTINALIS; CONSENSUS SEQUENCE; ENHANCER ELEMENTS, GENETIC; FAS-ASSOCIATED DEATH DOMAIN PROTEIN; FIBROBLAST GROWTH FACTORS; GATA TRANSCRIPTION FACTORS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MOLECULAR SEQUENCE DATA; ORGAN SPECIFICITY; OTX TRANSCRIPTION FACTORS;

EID: 84944453625     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.aac6948     Document Type: Article

References (33)

1. D. Acampora et al., Brain Res. Bull. 66, 410-420 (2005).
2. F. Beby, T. Lamonerie, Exp. Eye Res. 111, 9-16 (2013).
3. U. Rothbächer, V. Bertrand, C. Lamy, P. Lemaire, Development 134, 4023-4032 (2007).
4. P. Khoueiry et al., Curr. Biol. 20, 792-802 (2010).
5. V. Bertrand, C. Hudson, D. Caillol, C. Popovici, P. Lemaire, Cell 115, 615-627 (2003).
6. C. Hudson, P. Lemaire, Mech. Dev. 100, 189-203 (2001).
7. S. Barolo, J. W. Posakony, Genes Dev. 16, 1167-1181 (2002).
8. T. Oosterveen et al., Proc. Natl. Acad. Sci. U.S.A. 110, 7330-7335 (2013).
9. K. A. Guss, C. E. Nelson, A. Hudson, M. E. Kraus, S. B. Carroll, Science 292, 1164-1167 (2001).
10. G. H. Wei et al., EMBO J. 29, 2147-2160 (2010).
11. G. Badis et al., Science 324, 1720-1723 (2009).
12. A. Jolma et al., Cell 152, 327-339 (2013).
13. K. R. Nitta et al., eLife 4, e04837 (2015).
14. M. A. Hume, L. A. Barrera, S. S. Gisselbrecht, M. L. Bulyk, Nucleic Acids Res. 43, D117-D122 (2015).
15. H. Zhang, M. Levine, H. L. Ashe, Genes Dev. 15, 261-266 (2001).
16. J. Crocker et al., Cell 160, 191-203 (2015).
17. S. Small, R. Kraut, T. Hoey, R. Warrior, M. Levine, Genes Dev. 5, 827-839 (1991).
18. C. I. Swanson, D. B. Schwimmer, S. Barolo, Curr. Biol. 21, 1186-1196 (2011).
19. J. Jiang, M. Levine, Cell 72, 741-752 (1993).
20. R. W. Lusk, M. B. Eisen, PLOS Genet. 6, e1000829 (2010).
21. M. M. Kulkarni, D. N. Arnosti, Mol. Cell. Biol. 25, 3411-3420 (2005).
22. C. I. Swanson, N. C. Evans, S. Barolo, Dev. Cell 18, 359-370 (2010).
23. A. Muhlethaler-Mottet et al., J. Biol. Chem. 279, 40529-40535 (2004).
24. D. Panne, T. Maniatis, S. C. Harrison, Cell 129, 1111-1123 (2007).
25. W. Shi, M. Levine, Development 135, 931-940 (2008).
26. H. Yasuo, C. Hudson, Dev. Biol. 302, 92-103 (2007).
27. A. Stolfi, E. Wagner, J. M. Taliaferro, S. Chou, M. Levine, Development 138, 5429-5439 (2011).
28. E. Wagner, M. Levine, Development 139, 2351-2359 (2012).
29. W. A. Whyte et al., Cell 153, 307-319 (2013).
30. D. Hnisz et al., Cell 155, 934-947 (2013).
31. Q. Li, K. R. Peterson, X. Fang, G. Stamatoyannopoulos, Blood 100, 3077-3086 (2002).
32. G. M. Clore, A. Bax, J. G. Omichinski, A. M. Gronenborn, Structure 2, 89-94 (1994).
33. R. Kodandapani et al., Nature 380, 456-460 (1996).