-
1
-
-
2942599831
-
'Short hydrogen bonds in photoactive yellow protein'
-
Anderson, S., Crosson, S., and Moffat, K., "Short hydrogen bonds in photoactive yellow protein," Acta Crystallogr. D 60, 1008-1016 (2004). 10.1107/S090744490400616X
-
(2004)
Acta Crystallogr. D
, vol.60
, pp. 1008-1016
-
-
Anderson, S.1
Crosson, S.2
Moffat, K.3
-
2
-
-
84901819736
-
'Cheetah: Software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data'
-
Barty, A., Kirian, R. A., Maia, F. R. N. C., Hantke, M., Yoon, C. H., White, T. A., and Chapman, H., "Cheetah: Software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data," J. Appl. Crystallogr. 47, 1118-1131 (2014). 10.1107/S1600576714007626
-
(2014)
J. Appl. Crystallogr
, vol.47
, pp. 1118-1131
-
-
Barty, A.1
Kirian, R.A.2
Maia, F.R.N.C.3
Hantke, M.4
Yoon, C.H.5
White, T.A.6
Chapman, H.7
-
3
-
-
0036616218
-
'The protein data bank'
-
Berman, H. M., Battistuz, T., Bhat, T. N., Bluhm, W. F., Bourne, P. E., Burkhardt, K., and Zardecki, C., "The protein data bank," Acta Crystallogr. D 58(Pt 6 No 1), 899-907 (2002). 10.1107/S0907444902003451
-
(2002)
Acta Crystallogr. D
, vol.58
, Issue.1
, pp. 899-907
-
-
Berman, H.M.1
Battistuz, T.2
Bhat, T.N.3
Bluhm, W.F.4
Bourne, P.E.5
Burkhardt, K.6
Zardecki, C.7
-
4
-
-
0029110488
-
'1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: Unusual fold, active site, and chromophore'
-
Borgstahl, G. E., Williams, D. R., and Getzoff, E. D., "1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: Unusual fold, active site, and chromophore," Biochemistry 34(19), 6278-6287 (1995). 10.1021/bi00019a004
-
(1995)
Biochemistry
, vol.34
, Issue.19
, pp. 6278-6287
-
-
Borgstahl, G.E.1
Williams, D.R.2
Getzoff, E.D.3
-
5
-
-
84892422073
-
'Breaking the indexing ambiguity in serial crystallography'
-
Brehm, W. and Diederichs, K., "Breaking the indexing ambiguity in serial crystallography," Acta Crystallogr. D 70(Pt 1), 101-109 (2014). 10.1107/S1399004713025431
-
(2014)
Acta Crystallogr. D
, vol.70
, pp. 101-109
-
-
Brehm, W.1
Diederichs, K.2
-
6
-
-
84921777915
-
'Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions'
-
Brown, A., Long, F., Nicholls, R. A., Toots, J., Emsley, P., and Murshudov, G., "Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions," Acta Crystallogr. D 71, 136-153 (2015). 10.1107/S1399004714021683
-
(2015)
Acta Crystallogr. D
, vol.71
, pp. 136-153
-
-
Brown, A.1
Long, F.2
Nicholls, R.A.3
Toots, J.4
Emsley, P.5
Murshudov, G.6
-
7
-
-
3543012707
-
'Crystallography & NMR system: A new software suite for macromolecular structure determination'
-
Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., and Warren, G. L., "Crystallography & NMR system: A new software suite for macromolecular structure determination," Acta Crystallogr. D 54(Pt 5), 905-921 (1998). 10.1107/S0907444998003254
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Warren, G.L.7
-
8
-
-
84901961522
-
'Slow-cooling protocols for crystallographic refinement by simulated annealing'
-
Brunger, A. T., Krukowski, A., and Erickson, J. W., "Slow-cooling protocols for crystallographic refinement by simulated annealing," Acta Crystallogr A 46(Pt 7), 585-593 (1990). 10.1107/S0108767390002355
-
(1990)
Acta Crystallogr A
, vol.46
, pp. 585-593
-
-
Brunger, A.T.1
Krukowski, A.2
Erickson, J.W.3
-
9
-
-
79551658540
-
'Femtosecond X-ray protein nanocrystallography'
-
Chapman, H. N., Fromme, P., Barty, A., White, T. A., Kirian, R. A., Aquila, A., and Spence, J. C., "Femtosecond X-ray protein nanocrystallography," Nature 470(7332), 73-77 (2011). 10.1038/nature09750
-
(2011)
Nature
, vol.470
, Issue.7332
, pp. 73-77
-
-
Chapman, H.N.1
Fromme, P.2
Barty, A.3
White, T.A.4
Kirian, R.A.5
Aquila, A.6
Spence, J.C.7
-
11
-
-
77949535720
-
'Features and development of Coot'
-
Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K., "Features and development of Coot," Acta Crystallogr. D 66(Pt 4), 486-501 (2010). 10.1107/S0907444910007493
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
12
-
-
79955563686
-
'Macromolecular crystallography radiation damage research: What's new?'
-
Garman, E. F. and Weik, M., "Macromolecular crystallography radiation damage research: What's new?," J. Synchrotron Radiat. 18, 313-317 (2011). 10.1107/S0909049511013859
-
(2011)
J. Synchrotron Radiat
, vol.18
, pp. 313-317
-
-
Garman, E.F.1
Weik, M.2
-
13
-
-
0043125483
-
'Anticipatory active-site motions and chromophore distortion prime photoreceptor PYP for light activation'
-
Getzoff, E. D., Gutwin, K. N., and Genick, U. K., "Anticipatory active-site motions and chromophore distortion prime photoreceptor PYP for light activation," Nat. Struct. Biol. 10(8), 663-668 (2003). 10.1038/nsb958
-
(2003)
Nat. Struct. Biol
, vol.10
, Issue.8
, pp. 663-668
-
-
Getzoff, E.D.1
Gutwin, K.N.2
Genick, U.K.3
-
14
-
-
21044432995
-
'Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds'
-
Ihee, H., Rajagopal, S., Srajer, V., Pahl, R., Anderson, S., Schmidt, M., and Moffat, K., "Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds," Proc. Natl. Acad. Sci. U.S.A. 102(20), 7145-7150 (2005). 10.1073/pnas.0409035102
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, Issue.20
, pp. 7145-7150
-
-
Ihee, H.1
Rajagopal, S.2
Srajer, V.3
Pahl, R.4
Anderson, S.5
Schmidt, M.6
Moffat, K.7
-
15
-
-
84875478146
-
'Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography'
-
Jung, Y. O., Lee, J. H., Kim, J., Schmidt, M., Moffat, K., Srajer, V., and Ihee, H., "Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography," Nat. Chem. 5(3), 212-220 (2013). 10.1038/nchem.1565
-
(2013)
Nat. Chem
, vol.5
, Issue.3
, pp. 212-220
-
-
Jung, Y.O.1
Lee, J.H.2
Kim, J.3
Schmidt, M.4
Moffat, K.5
Srajer, V.6
Ihee, H.7
-
16
-
-
84905492809
-
'Processing of X-ray snapshots from crystals in random orientations'
-
Kabsch, W., "Processing of X-ray snapshots from crystals in random orientations," Acta Crystallogr D 70(Pt 8), 2204-2216 (2014). 10.1107/S1399004714013534
-
(2014)
Acta Crystallogr D
, vol.70
, pp. 2204-2216
-
-
Kabsch, W.1
-
17
-
-
84861425552
-
'Linking crystallographic model and data quality'
-
Karplus, P. A. and Diederichs, K., "Linking crystallographic model and data quality," Science 336(6084), 1030-1033 (2012). 10.1126/science.1218231
-
(2012)
Science
, vol.336
, Issue.6084
, pp. 1030-1033
-
-
Karplus, P.A.1
Diederichs, K.2
-
18
-
-
0002906346
-
-
(Kluwer Academic Publishers, Dordrecht)
-
Kleywegt, G. J., Zou, J. Y., Kjeldgaard, M., and Jones, A., International Tables for Crystallography, Vol. F, pp. 353-356 (Kluwer Academic Publishers, Dordrecht, 2001).
-
(2001)
International Tables for Crystallography
, vol.F
, pp. 353-356
-
-
Kleywegt, G.J.1
Zou, J.Y.2
Kjeldgaard, M.3
Jones, A.4
-
19
-
-
84855327148
-
'Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser'
-
Lomb, L., Barends, T. R., Kassemeyer, S., Aquila, A., Epp, S. W., Erk, B., and Schlichting, I., "Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser," Phys. Rev. B 84(21), 214111 (2011). 10.1103/PhysRevB.84.214111
-
(2011)
Phys. Rev. B
, vol.84
, Issue.21
-
-
Lomb, L.1
Barends, T.R.2
Kassemeyer, S.3
Aquila, A.4
Epp, S.W.5
Erk, B.6
Schlichting, I.7
-
20
-
-
0022430790
-
'Isolation and characterization of soluble cytochromes, ferredoxins and other chromophoric proteins from the halophilic phototrophic bacterium Ectothiorhodospira halophila'
-
Meyer, T. E., "Isolation and characterization of soluble cytochromes, ferredoxins and other chromophoric proteins from the halophilic phototrophic bacterium Ectothiorhodospira halophila," Biochim. Biophys. Acta 806(1), 175-183 (1985). 10.1016/0005-2728(85)90094-5
-
(1985)
Biochim. Biophys. Acta
, vol.806
, Issue.1
, pp. 175-183
-
-
Meyer, T.E.1
-
21
-
-
79953763877
-
'REFMAC5 for the refinement of macromolecular crystal structures'
-
Murshudov, G. N., Skubak, P., Lebedev, A. A., Pannu, N. S., Steiner, R. A., Nicholls, R. A., and Vagin, A. A., "REFMAC5 for the refinement of macromolecular crystal structures," Acta Crystallogr. D 67(Pt 4), 355-367 (2011). 10.1107/S0907444911001314
-
(2011)
Acta Crystallogr. D
, vol.67
, pp. 355-367
-
-
Murshudov, G.N.1
Skubak, P.2
Lebedev, A.A.3
Pannu, N.S.4
Steiner, R.A.5
Nicholls, R.A.6
Vagin, A.A.7
-
22
-
-
33645498518
-
'Experimental determination of the radiation dose limit for cryocooled protein crystals'
-
Owen, R. L., Rudino-Pinera, E., and Garman, E. F., "Experimental determination of the radiation dose limit for cryocooled protein crystals," Proc. Natl. Acad. Sci. U.S.A. 103(13), 4912-4917 (2006). 10.1073/pnas.0600973103
-
(2006)
Proc. Natl. Acad. Sci. U.S.A
, vol.103
, Issue.13
, pp. 4912-4917
-
-
Owen, R.L.1
Rudino-Pinera, E.2
Garman, E.F.3
-
23
-
-
4444221565
-
'UCSF chimera-A visualization system for exploratory research and analysis'
-
Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., and Ferrin, T. E., "UCSF chimera-A visualization system for exploratory research and analysis," J. Comput. Chem. 25(13), 1605-1612 (2004). 10.1002/jcc.20084
-
(2004)
J. Comput. Chem
, vol.25
, Issue.13
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
24
-
-
84924243435
-
'XFEL diffraction: Developing processing methods to optimize data quality'
-
Sauter, N. K., "XFEL diffraction: Developing processing methods to optimize data quality," J. Synchrotron Radiat. 22, 239-248 (2015). 10.1107/S1600577514028203
-
(2015)
J. Synchrotron Radiat
, vol.22
, pp. 239-248
-
-
Sauter, N.K.1
-
25
-
-
84879384824
-
'New Python-based methods for data processing'
-
Sauter, N. K., Hattne, J., Grosse-Kunstleve, R. W., and Echols, N., "New Python-based methods for data processing," Acta Crystallogr. D 69(Pt 7), 1274-1282 (2013). 10.1107/S0907444913000863
-
(2013)
Acta Crystallogr. D
, vol.69
, pp. 1274-1282
-
-
Sauter, N.K.1
Hattne, J.2
Grosse-Kunstleve, R.W.3
Echols, N.4
-
26
-
-
84868444740
-
'RELION: Implementation of a Bayesian approach to cryo-EM structure determination'
-
Scheres, S. H. W., "RELION: Implementation of a Bayesian approach to cryo-EM structure determination," J. Struct. Biol. 180(3), 519-530 (2012). 10.1016/j.jsb.2012.09.006
-
(2012)
J. Struct. Biol
, vol.180
, Issue.3
, pp. 519-530
-
-
Scheres, S.H.W.1
-
27
-
-
84924278628
-
'Serial femtosecond crystallography: The first five years'
-
Schlichting, I., "Serial femtosecond crystallography: The first five years," IUCrJ 2, 246-255 (2015). 10.1107/S205225251402702X
-
(2015)
IUCrJ
, vol.2
, pp. 246-255
-
-
Schlichting, I.1
-
28
-
-
1842738214
-
'Protein kinetics: Structures of intermediates and reaction mechanism from time-resolved x-ray data'
-
Schmidt, M., Pahl, R., Srajer, V., Anderson, S., Ren, Z., Ihee, H., and Moffat, K., "Protein kinetics: Structures of intermediates and reaction mechanism from time-resolved x-ray data," Proc. Natl. Acad. Sci. U.S.A. 101(14), 4799-4804 (2004). 10.1073/pnas.0305983101
-
(2004)
Proc. Natl. Acad. Sci. U.S.A
, vol.101
, Issue.14
, pp. 4799-4804
-
-
Schmidt, M.1
Pahl, R.2
Srajer, V.3
Anderson, S.4
Ren, Z.5
Ihee, H.6
Moffat, K.7
-
29
-
-
84884170682
-
'Protein energy landscapes determined by five-dimensional crystallography'
-
Schmidt, M., Srajer, V., Henning, R., Ihee, H., Purwar, N., Tenboer, J., and Tripathi, S., "Protein energy landscapes determined by five-dimensional crystallography," Acta Crystallogr. D 69, 2534-2542 (2013). 10.1107/S0907444913025997
-
(2013)
Acta Crystallogr. D
, vol.69
, pp. 2534-2542
-
-
Schmidt, M.1
Srajer, V.2
Henning, R.3
Ihee, H.4
Purwar, N.5
Tenboer, J.6
Tripathi, S.7
-
30
-
-
84857596308
-
'The kinetic dose limit in room-temperature time-resolved macromolecular crystallography'
-
Schmidt, M., Srajer, V., Purwar, N., and Tripathi, S., "The kinetic dose limit in room-temperature time-resolved macromolecular crystallography," J. Synchrotron Radiat. 19(Pt 2), 264-273 (2012). 10.1107/S090904951105549X
-
(2012)
J. Synchrotron Radiat
, vol.19
, pp. 264-273
-
-
Schmidt, M.1
Srajer, V.2
Purwar, N.3
Tripathi, S.4
-
31
-
-
84869756006
-
'Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography'
-
Schotte, F., Cho, H. S., Kaila, V. R., Kamikubo, H., Dashdorj, N., Henry, E. R., and Anfinrud, P. A., "Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography," Proc. Natl. Acad. Sci. U.S.A. 109(47), 19256-19261 (2012). 10.1073/pnas.1210938109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A
, vol.109
, Issue.47
, pp. 19256-19261
-
-
Schotte, F.1
Cho, H.S.2
Kaila, V.R.3
Kamikubo, H.4
Dashdorj, N.5
Henry, E.R.6
Anfinrud, P.A.7
-
32
-
-
37549039510
-
'A short history of SHELX'
-
Sheldrick, G. M., "A short history of SHELX," Acta Crystallogr. A 64(Pt 1), 112-122 (2008). 10.1107/S0108767307043930
-
(2008)
Acta Crystallogr. A
, vol.64
, pp. 112-122
-
-
Sheldrick, G.M.1
-
33
-
-
84918582756
-
'Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein'
-
Tenboer, J., Basu, S., Zatsepin, N., Pande, K., Milathianaki, D., Frank, M., and Schmidt, M., "Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein," Science 346(6214), 1242-1246 (2014). 10.1126/science.1259357
-
(2014)
Science
, vol.346
, Issue.6214
, pp. 1242-1246
-
-
Tenboer, J.1
Basu, S.2
Zatsepin, N.3
Pande, K.4
Milathianaki, D.5
Frank, M.6
Schmidt, M.7
-
34
-
-
84984876870
-
'Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals'
-
Uervirojnangkoorn, M., Zeldin, O. B., Lyubimov, A. Y., Hattne, J., Brewster, A. S., Sauter, N. K., and Weis, W. I., "Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals," Elife 4, e05421 (2015). 10.7554/eLife.05421
-
(2015)
Elife
, vol.4
-
-
Uervirojnangkoorn, M.1
Zeldin, O.B.2
Lyubimov, A.Y.3
Hattne, J.4
Brewster, A.S.5
Sauter, N.K.6
Weis, W.I.7
-
35
-
-
84861602614
-
'Injector for scattering measurements on fully solvated biospecies'
-
Weierstall, U., Spence, J. C., and Doak, R. B., "Injector for scattering measurements on fully solvated biospecies," Rev. Sci. Instrum. 83(3), 035108 (2012). 10.1063/1.3693040
-
(2012)
Rev. Sci. Instrum
, vol.83
, Issue.3
-
-
Weierstall, U.1
Spence, J.C.2
Doak, R.B.3
-
36
-
-
84902675175
-
'Post-refinement method for snapshot serial crystallography'
-
White, T. A., "Post-refinement method for snapshot serial crystallography," Philos. Trans. R. Soc. B 369(1647), 20130330 (2014). 10.1098/rstb.2013.0330
-
(2014)
Philos. Trans. R. Soc. B
, vol.369
, Issue.1647
-
-
White, T.A.1
-
37
-
-
84859777150
-
'CrystFEL: A software suite for snapshot serial crystallography'
-
White, T. A., Kirian, R. A., Martin, A. V., Aquila, A., Nass, K., Barty, A., and Chapman, H. N., "CrystFEL: A software suite for snapshot serial crystallography," J. Appl. Crystallogr. 45, 335-341 (2012). 10.1107/S0021889812002312
-
(2012)
J. Appl. Crystallogr
, vol.45
, pp. 335-341
-
-
White, T.A.1
Kirian, R.A.2
Martin, A.V.3
Aquila, A.4
Nass, K.5
Barty, A.6
Chapman, H.N.7
|