Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser

Physical Review B - Condensed Matter and Materials Physics

Volumn 84, Issue 21, 2011, Pages

  Lomb, Lukas ^a,b   Barends, Thomas R M ^a,b   Kassemeyer, Stephan ^a,b   Aquila, Andrew ^c   Epp, Sascha W ^b,d   Erk, Benjamin ^b,d   Foucar, Lutz ^a,b   Hartmann, Robert ^e   Rudek, Benedikt ^b,d   Rolles, Daniel ^a,b   Rudenko, Artem ^b,d   Shoeman, Robert L ^a,b   Andreasson, Jakob ^f   Bajt, Sasa ^c   Barthelmess, Miriam ^c   Barty, Anton ^c   Bogan, Michael J ^g   Bostedt, Christoph ^g   Bozek, John D ^g   Caleman, Carl ^c   Coffee, Ryan ^g   Coppola, Nicola ^c,m   Deponte, Daniel P ^c   Doak, R Bruce ^h   Ekeberg, Tomas ^f   Fleckenstein, Holger ^c   Fromme, Petra ^h   Gebhardt, Maike ^a   Graafsma, Heinz ^c   Gumprecht, Lars ^c   Hampton, Christina Y ^g   Hartmann, Andreas ^e   Hauser, Günter ^i,j   Hirsemann, Helmut ^c   Holl, Peter ^e   Holton, James M ^k   Hunter, Mark S ^h   Kabsch, Wolfgang ^a   Kimmel, Nils ^i,j   Kirian, Richard A ^h   Liang, Mengning ^c   Maia, Filipe R N C ^f,k   Meinhart, Anton ^a   Marchesini, Stefano ^k   Martin, Andrew V ^c   Nass, Karol ^l   Reich, Christian ^e   Schulz, Joachim ^c   Seibert, M Marvin ^f,g   Sierra, Raymond ^g   Soltau, Heike ^e   Spence, John C H ^h   Steinbrener, Jan ^a,b   Stellato, Francesco ^c   Stern, Stephan ^c   Timneanu, Nicusor ^f   Wang, Xiaoyu ^h   Weidenspointner, Georg ^i,j   Weierstall, Uwe ^h   White, Thomas A ^c   Wunderer, Cornelia ^c   Chapman, Henry N ^c,l   Ullrich, Joachim ^b,d   Strüder, Lothar ^b,i   Schlichting, Ilme ^a,b   more..

^a MAX PLANCK INSTITUTE FOR MEDICAL RESEARCH   (Germany)

^b Center for Free Electron Laser Science   (Germany)

^c DESY   (Germany)

^d MAX PLANCK INSTITUT FÜR KERNPHYSIK   (Germany)

^e PNSENSOR GMBH   (Germany)

^f UPPSALA UNIVERSITY   (Sweden)

^g SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^h ARIZONA STATE UNIVERSITY   (United States)

ⁱ MPI HALBLEITERLABOR   (Germany)

^j MAX PLANCK INSTITUT FÜR EXTRATERRESTRISCHE PHYSIK   (Germany)

^k LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^l UNIVERSITY OF HAMBURG   (Germany)

^m EUROPEAN XFEL GMBH   (Germany)

more..

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84855327148     PISSN: 10980121     EISSN: 1550235X     Source Type: Journal    
DOI: 10.1103/PhysRevB.84.214111     Document Type: Article

References (34)

1. J. Holton and K. Frankel, Acta Crystallogr., Sect. D: Biol. Crystallogr. ABCRE6 0907-4449 10.1107/S0907444910007262 66, 393 (2010).
2. M. Hoener, L. Fang, O. Kornilov, O. Gessner, S. Pratt, M. Guehr, E. Kanter, C. Blaga, C. Bostedt, J. Bozek, P. H. Bucksbaum, C. Buth, M. Chen, R. Coffee, J. Cryan, L. DiMauro, M. Glownia, E. Hosler, E. Kukk, S. R. Leone, B. McFarland, M. Messerschmidt, B. Murphy, V. Petrovic, D. Rolles, and N. Berrah, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.104.253002 104, 253002 (2010).
3. L. Young, E. Kanter, B. Kraessig, Y. Li, A. March, S. Pratt, R. Santra, S. Southworth, N. Rohringer, L. DiMauro, G. Doumy, C. A. Roedig, N. Berrah, L. Fang, M. Hoener, P. H. Bucksbaum, J. P. Cryan, S. Ghimire, J. M. Glownia, D. A. Reis, J. D. Bozek, C. Bostedt, and M. Messerschmidt, Nature (London) NATUAS 0028-0836 10.1038/nature09177 466, 56 (2010).
4. B. Ziaja, A. de Castro, E. Weckert, and T. Moeller, Eur. Phys. J. D EPJDF6 1434-6060 10.1140/epjd/e2006-00240-x 40, 465 (2006). (Pubitemid 44825824)
5. P. Persson, S. Lunell, A. Szoeke, B. Ziaja, and J. Hajdu, Protein Sci. PRCIEI 0961-8368 10.1110/ps.ps.26201 10, 2480 (2001). (Pubitemid 33091571)
6. W. Burmeister, Acta Crystallogr., Sect. D: Biol. Crystallogr. ABCRE6 0907-4449 10.1107/S0907444999016261 56, 328 (2000). (Pubitemid 30147184)
7. R. Ravelli and S. McSweeney, Structure STRUE6 0969-2126 10.1016/S0969-2126(00)00109-X 8, 315 (2000). (Pubitemid 30148697)
8. I. Schlichting, J. Berendzen, K. Chu, A. Stock, S. Maves, D. Benson, R. Sweet, D. Ringe, G. Petsko, and S. Sligar, Science SCIEAS 0036-8075 10.1126/science.287.5458.1615 287, 1615 (2000). (Pubitemid 30127756)
9. G. Berglund, G. Carlsson, A. Smith, H. Szoeke, A. Henriksen, and J. Hajdu, Nature (London) NATUAS 0028-0836 10.1038/417463a 417, 463 (2002). (Pubitemid 34563541)
10. R. Owen, E. Rudino-Pinera, and E. Garman, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.0600973103 103, 4912 (2006).
11. R. Henderson, Q. Rev. Biophys. QURBAW 0033-5835 10.1017/S003358350000305X 28, 171 (1995).
12. R. Neutze, R. Wouts, D. van der Spoel, E. Weckert, and J. Hajdu, Nature (London) NATUAS 0028-0836 10.1038/35021099 406, 752 (2000).
13. P. Emma, R. Akre, J. Arthur, R. Bionta, C. Bostedt, J. Bozek, A. Brachmann, P. Bucksbaum, R. Coffee, F. Decker, Y. Ding, D. Dowell, S. Edstrom, A. Fisher, J. Frisch, S. Gilevich, J. Hastings, G. Hays, Ph. Hering, Z. Huang, R. Iverson, H. Loos, M. Messerschmidt, A. Miahnahri, S. Moeller, H.-D. Nuhn, G. Pile, D. Ratner, J. Rzepiela, D. Schultz, T. Smith, P. Stefan, H. Tompkins, J. Turner, J. Welch, W. White, J. Wu, G. Yocky, and J. Galayda, Nat. Photonics NATUAS 1749-4885 10.1038/nphoton.2010.176 4, 641 (2010).
14. H. Chapman, P. Fromme, A. Barty, T. White, R. Kirian, A. Aquila, M. Hunter, J. Schulz, D. DePonte, U. Weierstall, R. B. Doak, F. R. N. C. Maia, A. V. Martin, I. Schlichting, L. Lomb, N. Coppola, R. L. Shoeman, S. W. Epp, R. Hartmann, D. Rolles, A. Rudenko, L. Foucar, N. Kimmel, G. Weidenspointner, P. Holl, M. Liang, M. Barthelmess, C. Caleman, S. Boutet, M. J. Bogan, J. Krzywinski, C. Bostedt, S. Bajt, L. Gumprecht, B. Rudek, B. Erk, C. Schmidt, A. Hömke, C. Reich, D. Pietschner, L. Strüder, G. Hauser, H. Gorke, J. Ullrich, S. Herrmann, G. Schaller, F. Schopper, H. Soltau, K.-U. Kühnel, M. Messerschmidt, J. D. Bozek, S. P. Hau-Riege, M. Frank, C. Y. Hampton, R. G. Sierra, D. Starodub, G. J. Williams, J. Hajdu, N. Timneanu, M. M. Seibert, J. Andreasson, A. Rocker, O. Jönsson, M. Svenda, S. Stern, K. Nass, R. Andritschke, C.-D. Schröter, F. Krasniqi, M. Bott, K. E. Schmidt, X. Wang, I. Grotjohann, J. M. Holton, T. R. M. Barends, R. Neutze, S. Marchesini, R. Fromme, S. Schorb, D. Rupp, M. Adolph, T. Gorkhover, I. Andersson, H. Hirsemann, G. Potdevin, H. Graafsma, B. Nilsson, and J. C. H. Spence, Nature (London) NATUAS 0028-0836 10.1038/nature09750 470, 73 (2011).
15. S. K. Son, L. Young, and R. Santra, Phys. Rev. A PLRAAN 1050-2947 10.1103/PhysRevA.83.033402 83, 033402 (2011).
16. J. Bozek, Eur. Phys. J.-Spec. Top. NATUAS 1951-6355 10.1140/epjst/e2009- 00982-y 169, 129 (2009).
17. L. Strueder, S. Epp, D. Rolles, R. Hartmann, P. Holl, G. Lutz, H. Soltau, R. Eckart, C. Reich, K. Heinzinger, C. Thamm, A. Rudenko, F. Krasniqi, K.-U. Kühnel, C. Bauer, C.-D. Schröter, R. Moshammer, S. Techert, D. Miessner, M. Porro, O. Hälker, N. Meidinger, N. Kimmel, R. Andritschke, F. Schopper, G. Weidenspointner, A. Ziegler, D. Pietschner, S. Herrmann, U. Pietsch, A. Walenta, W. Leitenberger, C. Bostedt, T. Möller, D. Rupp, M. Adolph, H. Graafsma, H. Hirsemann, K. Gärtner, R. Richter, L. Foucar, R. L. Shoeman, I. Schlichting, and J. Ullrich, Nucl. Instrum. Meth. A 0168-9002 10.1016/j.nima.2009.12.053 614, 483 (2010).
18. D. DePonte, U. Weierstall, K. Schmidt, J. Warner, D. Starodub, J. Spence, and R. Doak, J. Phys. D: Appl. Phys. JPAPBE 0022-3727 10.1088/0022-3727/41/19/ 195505 41, 195505, (2008).
19. J. Falkner, M. Ali, J. Jamison, J. Zhang, S. Adrianse, R. Simpson, M. Calabretta, W. Radding, G. Phillips Jr., and V. Colvin, Chem. Mater. CMATEX 0897-4756 10.1021/cm047924w 17, 2679 (2005). (Pubitemid 40749311)
20. K. Paithankar, R. Owen, and E. Garman, J. Synchrotron Radiat. JSYRES 0909-0495 10.1107/S0909049508040430 16, 152 (2009).
21. Z. Otwinowski and W. Minor, Methods Enzymol. JSYRES 0076-6879 10.1016/S0076-6879(97)76066-X 276, 307 (1997). (Pubitemid 27085611)
22. Q. Liu, A. Weaver, T. Xiang, D. Thiel, and Q. Hao, Acta Crystallogr., Sect. D: Biol. Crystallogr. ABCRE6 0907-4449 10.1107/S090744490300739X 59, 1016 (2003). (Pubitemid 36689392)
23. See Supplemental Material at http://link.aps.org/supplemental/10.1103/ PhysRevB.84.214111 for further figures and supplemental material concerning the analysis. The powder pattern intensities are also deposited.
24. C. Caleman, G. Huldt, F. Maia, C. Ortiz, F. Parak, J. Hajdu, D. van der Spoel, H. Chapman, and N. Timneanu, ACS Nano ABCRE6 1936-0851 10.1021/nn1020693 5, 139 (2011).
25. W. Kabsch, J. Appl. Crystallogr. JACGAR 0021-8898 10.1107/ S0021889888007903 21, 916 (1988).
26. B. Warren, X-Ray Diffraction (Dover Publications, New York, 1990).
27. C. Blake and D. Phillips, Vienna: International Atomic Energy Agency, 183 (1962).
28. C. Gnodtke, U. Saalmann, and J. M. Rost, Phys. Rev. A PLRAAN 1050-2947 10.1103/PhysRevA.79.041201 79, 041201 (2009).
29. S. P. Hau-Riege, R. A. London, H. N. Chapman, A. Szoke, and N. Timneanu, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.98.198302 98, 198302 (2007). (Pubitemid 47139474)
30. S. P. Hau-Riege, Phys. Rev. A PLRAAN 1050-2947 10.1103/PhysRevA.76.042511 76, 042511 (2007). (Pubitemid 47587547)
31. Z. Jurek and G. Faigel, Europhys. Lett. EULEEJ 0295-5075 10.1209/0295-5075/86/68003 86, 68003 (2009).
32. A. Barty, Nature Photonics (accepted, 2011).
33. K. Diederichs, S. McSweeney, and R. Ravelli, Acta Crystallogr., Sect. D: Biol. Crystallogr. ABCRE6 0907-4449 10.1107/S0907444903006516 59, 903 (2003). (Pubitemid 36599370)
34. H. Quiney and K. Nugent, Nat. Phys. 1745-2473 10.1038/nphys1859 7, 142 (2010).