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Volumn 28, Issue 4, 2015, Pages 515-528

The Genomic Landscape and Clinical Relevance of A-to-I RNA Editing in Human Cancers

(24)  Han, Leng a   Diao, Lixia a   Yu, Shuangxing a   Xu, Xiaoyan a,b   Li, Jie a   Zhang, Rui c,g   Yang, Yang a,d   Werner, Henrica M J a,e   Eterovic, A Karina a   Yuan, Yuan a   Li, Jun a   Nair, Nikitha f   Minelli, Rosalba f   Tsang, Yiu Huen f   Cheung, Lydia W T a   Jeong, Kang Jin a   Roszik, Jason a   Ju, Zhenlin a   Woodman, Scott E a   Lu, Yiling a   more..


Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE; INOSINE; UNTRANSLATED RNA; ANTINEOPLASTIC AGENT;

EID: 84944062619     PISSN: 15356108     EISSN: 18783686     Source Type: Journal    
DOI: 10.1016/j.ccell.2015.08.013     Document Type: Article
Times cited : (413)

References (51)
  • 1
    • 84855320189 scopus 로고    scopus 로고
    • Accurate identification of A-to-I RNA editing in human by transcriptome sequencing
    • Bahn J.H., Lee J.H., Li G., Greer C., Peng G., Xiao X. Accurate identification of A-to-I RNA editing in human by transcriptome sequencing. Genome Res. 2012, 22:142-150.
    • (2012) Genome Res. , vol.22 , pp. 142-150
    • Bahn, J.H.1    Lee, J.H.2    Li, G.3    Greer, C.4    Peng, G.5    Xiao, X.6
  • 3
    • 0035997389 scopus 로고    scopus 로고
    • RNA editing by adenosine deaminases that act on RNA
    • Bass B.L. RNA editing by adenosine deaminases that act on RNA. Annu. Rev. Biochem. 2002, 71:817-846.
    • (2002) Annu. Rev. Biochem. , vol.71 , pp. 817-846
    • Bass, B.L.1
  • 7
    • 84863922124 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of human colon and rectal cancer
    • Cancer Genome Atlas Network
    • Comprehensive molecular characterization of human colon and rectal cancer. Nature 2012, 487:330-337. Cancer Genome Atlas Network.
    • (2012) Nature , vol.487 , pp. 330-337
  • 8
    • 84877028141 scopus 로고    scopus 로고
    • Comprehensive molecular portraits of human breast tumours
    • Cancer Genome Atlas Network
    • Comprehensive molecular portraits of human breast tumours. Nature 2012, 490:61-70. Cancer Genome Atlas Network.
    • (2012) Nature , vol.490 , pp. 61-70
  • 9
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • Cancer Genome Atlas Research Network
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 2008, 455:1061-1068. Cancer Genome Atlas Research Network.
    • (2008) Nature , vol.455 , pp. 1061-1068
  • 10
    • 84866894408 scopus 로고    scopus 로고
    • Comprehensive genomic characterization of squamous cell lung cancers
    • Cancer Genome Atlas Research Network
    • Comprehensive genomic characterization of squamous cell lung cancers. Nature 2012, 489:519-525. Cancer Genome Atlas Research Network.
    • (2012) Nature , vol.489 , pp. 519-525
  • 11
    • 84879890360 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of clear cell renal cell carcinoma
    • Cancer Genome Atlas Research Network
    • Comprehensive molecular characterization of clear cell renal cell carcinoma. Nature 2013, 499:43-49. Cancer Genome Atlas Research Network.
    • (2013) Nature , vol.499 , pp. 43-49
  • 14
    • 84897997022 scopus 로고    scopus 로고
    • A disrupted RNA editing balance mediated by ADARs (Adenosine DeAminases that act on RNA) in human hepatocellular carcinoma
    • Chan T.H., Lin C.H., Qi L., Fei J., Li Y., Yong K.J., Liu M., Song Y., Chow R.K., Ng V.H., et al. A disrupted RNA editing balance mediated by ADARs (Adenosine DeAminases that act on RNA) in human hepatocellular carcinoma. Gut 2014, 63:832-843.
    • (2014) Gut , vol.63 , pp. 832-843
    • Chan, T.H.1    Lin, C.H.2    Qi, L.3    Fei, J.4    Li, Y.5    Yong, K.J.6    Liu, M.7    Song, Y.8    Chow, R.K.9    Ng, V.H.10
  • 15
    • 0034078399 scopus 로고    scopus 로고
    • A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains
    • Chen C.X., Cho D.S.C., Wang Q., Lai F., Carter K.C., Nishikura K. A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains. RNA 2000, 6:755-767.
    • (2000) RNA , vol.6 , pp. 755-767
    • Chen, C.X.1    Cho, D.S.C.2    Wang, Q.3    Lai, F.4    Carter, K.C.5    Nishikura, K.6
  • 17
    • 84907967403 scopus 로고    scopus 로고
    • Naturally occurring neomorphic PIK3R1 mutations activate the MAPK pathway, dictating therapeutic response to MAPK pathway inhibitors
    • Cheung L.W., Yu S., Zhang D., Li J., Ng P.K., Panupinthu N., Mitra S., Ju Z., Yu Q., Liang H., et al. Naturally occurring neomorphic PIK3R1 mutations activate the MAPK pathway, dictating therapeutic response to MAPK pathway inhibitors. Cancer Cell 2014, 26:479-494.
    • (2014) Cancer Cell , vol.26 , pp. 479-494
    • Cheung, L.W.1    Yu, S.2    Zhang, D.3    Li, J.4    Ng, P.K.5    Panupinthu, N.6    Mitra, S.7    Ju, Z.8    Yu, Q.9    Liang, H.10
  • 20
    • 0037592977 scopus 로고    scopus 로고
    • Requirement of dimerization for RNA editing activity of adenosine deaminases acting on RNA
    • Cho D.S., Yang W., Lee J.T., Shiekhattar R., Murray J.M., Nishikura K. Requirement of dimerization for RNA editing activity of adenosine deaminases acting on RNA. J. Biol. Chem. 2003, 278:17093-17102.
    • (2003) J. Biol. Chem. , vol.278 , pp. 17093-17102
    • Cho, D.S.1    Yang, W.2    Lee, J.T.3    Shiekhattar, R.4    Murray, J.M.5    Nishikura, K.6
  • 22
    • 84858682499 scopus 로고    scopus 로고
    • Canonical A-to-I and C-to-U RNA editing is enriched at 3'UTRs and microRNA target sites in multiple mouse tissues
    • Gu T., Buaas F.W., Simons A.K., Ackert-Bicknell C.L., Braun R.E., Hibbs M.A. Canonical A-to-I and C-to-U RNA editing is enriched at 3'UTRs and microRNA target sites in multiple mouse tissues. PLoS ONE 2012, 7:e33720.
    • (2012) PLoS ONE , vol.7 , pp. e33720
    • Gu, T.1    Buaas, F.W.2    Simons, A.K.3    Ackert-Bicknell, C.L.4    Braun, R.E.5    Hibbs, M.A.6
  • 24
    • 0029877296 scopus 로고    scopus 로고
    • Q/R site editing in kainate receptor GluR5 and GluR6 pre-mRNAs requires distant intronic sequences
    • Herb A., Higuchi M., Sprengel R., Seeburg P.H. Q/R site editing in kainate receptor GluR5 and GluR6 pre-mRNAs requires distant intronic sequences. Proc. Natl. Acad. Sci. U S A 1996, 93:1875-1880.
    • (1996) Proc. Natl. Acad. Sci. U S A , vol.93 , pp. 1875-1880
    • Herb, A.1    Higuchi, M.2    Sprengel, R.3    Seeburg, P.H.4
  • 25
    • 0027772363 scopus 로고
    • RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency
    • Higuchi M., Single F.N., Köhler M., Sommer B., Sprengel R., Seeburg P.H. RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency. Cell 1993, 75:1361-1370.
    • (1993) Cell , vol.75 , pp. 1361-1370
    • Higuchi, M.1    Single, F.N.2    Köhler, M.3    Sommer, B.4    Sprengel, R.5    Seeburg, P.H.6
  • 31
    • 33947719472 scopus 로고    scopus 로고
    • Hypothesis: RNA editing of microRNA target sites in humans?
    • Liang H., Landweber L.F. Hypothesis: RNA editing of microRNA target sites in humans?. RNA 2007, 13:463-467.
    • (2007) RNA , vol.13 , pp. 463-467
    • Liang, H.1    Landweber, L.F.2
  • 32
    • 84868320535 scopus 로고    scopus 로고
    • Whole-exome sequencing combined with functional genomics reveals novel candidate driver cancer genes in endometrial cancer
    • Liang H., Cheung L.W.T., Li J., Ju Z., Yu S., Stemke-Hale K., Dogruluk T., Lu Y., Liu X., Gu C., et al. Whole-exome sequencing combined with functional genomics reveals novel candidate driver cancer genes in endometrial cancer. Genome Res. 2012, 22:2120-2129.
    • (2012) Genome Res. , vol.22 , pp. 2120-2129
    • Liang, H.1    Cheung, L.W.T.2    Li, J.3    Ju, Z.4    Yu, S.5    Stemke-Hale, K.6    Dogruluk, T.7    Lu, Y.8    Liu, X.9    Gu, C.10
  • 33
    • 0033843588 scopus 로고    scopus 로고
    • Changing genetic information through RNA editing
    • Maas S., Rich A. Changing genetic information through RNA editing. BioEssays 2000, 22:790-802.
    • (2000) BioEssays , vol.22 , pp. 790-802
    • Maas, S.1    Rich, A.2
  • 34
    • 0035807807 scopus 로고    scopus 로고
    • Underediting of glutamate receptor GluR-B mRNA in malignant gliomas
    • Maas S., Patt S., Schrey M., Rich A. Underediting of glutamate receptor GluR-B mRNA in malignant gliomas. Proc. Natl. Acad. Sci. U S A 2001, 98:14687-14692.
    • (2001) Proc. Natl. Acad. Sci. U S A , vol.98 , pp. 14687-14692
    • Maas, S.1    Patt, S.2    Schrey, M.3    Rich, A.4
  • 41
    • 84872186385 scopus 로고    scopus 로고
    • Lack of evidence for existence of noncanonical RNA editing
    • Piskol R., Peng Z., Wang J., Li J.B. Lack of evidence for existence of noncanonical RNA editing. Nat. Biotechnol. 2013, 31:19-20.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 19-20
    • Piskol, R.1    Peng, Z.2    Wang, J.3    Li, J.B.4
  • 44
    • 84891797364 scopus 로고    scopus 로고
    • RADAR: a rigorously annotated database of A-to-I RNA editing
    • Ramaswami G., Li J.B. RADAR: a rigorously annotated database of A-to-I RNA editing. Nucleic Acids Res. 2014, 42:D109-D113.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D109-D113
    • Ramaswami, G.1    Li, J.B.2
  • 45
    • 84861970552 scopus 로고    scopus 로고
    • Accurate identification of human Alu and non-Alu RNA editing sites
    • Ramaswami G., Lin W., Piskol R., Tan M.H., Davis C., Li J.B. Accurate identification of human Alu and non-Alu RNA editing sites. Nat. Methods 2012, 9:579-581.
    • (2012) Nat. Methods , vol.9 , pp. 579-581
    • Ramaswami, G.1    Lin, W.2    Piskol, R.3    Tan, M.H.4    Davis, C.5    Li, J.B.6
  • 47
    • 0033529064 scopus 로고    scopus 로고
    • Regulation of alternative splicing by RNA editing
    • Rueter S.M., Dawson T.R., Emeson R.B. Regulation of alternative splicing by RNA editing. Nature 1999, 399:75-80.
    • (1999) Nature , vol.399 , pp. 75-80
    • Rueter, S.M.1    Dawson, T.R.2    Emeson, R.B.3
  • 49
    • 66449129109 scopus 로고    scopus 로고
    • Large-scale mRNA sequencing determines global regulation of RNA editing during brain development
    • Wahlstedt H., Daniel C., Ensterö M., Ohman M. Large-scale mRNA sequencing determines global regulation of RNA editing during brain development. Genome Res. 2009, 19:978-986.
    • (2009) Genome Res. , vol.19 , pp. 978-986
    • Wahlstedt, H.1    Daniel, C.2    Ensterö, M.3    Ohman, M.4
  • 50
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
    • Wang K., Li M., Hakonarson H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 2010, 38:e164.
    • (2010) Nucleic Acids Res. , vol.38 , pp. e164
    • Wang, K.1    Li, M.2    Hakonarson, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.