-
1
-
-
84875476368
-
miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data
-
An, J., Lai, J., Lehman, M. L., and Nelson, C. C. (2013). miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res. 41, 727-737. doi: 10.1093/nar/gks1187
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 727-737
-
-
An, J.1
Lai, J.2
Lehman, M.L.3
Nelson, C.C.4
-
2
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S., and Huber, W. (2010). Differential expression analysis for sequence count data. Genome Biol. 11, R106. doi:10.1186/gb-2010-11-10-r106
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
3
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigo, R., Gingeras, T. R., Margulies, E. H., et al. (2007). Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447, 799-816. doi:10.1038/nature05874
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigo, R.4
Gingeras, T.R.5
Margulies, E.H.6
-
4
-
-
10244243802
-
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
-
Bonnet, E., Wuyts, J., Rouzé, P., and Van de Peer, Y. (2004). Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics 20, 2911-2917. doi:10.1093/bioinformatics/bth374
-
(2004)
Bioinformatics
, vol.20
, pp. 2911-2917
-
-
Bonnet, E.1
Wuyts, J.2
Rouzé, P.3
Van de Peer, Y.4
-
5
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili, M. N., Trapnell, C., Goff, L., Koziol, M., Tazon-Vega, B., Regev, A., et al. (2011). Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 25, 1915-1927. doi:10.1101/gad.17446611
-
(2011)
Genes Dev
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
Trapnell, C.2
Goff, L.3
Koziol, M.4
Tazon-Vega, B.5
Regev, A.6
-
6
-
-
84870420933
-
ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data
-
Chen, C.-J., Servant, N., Toedling, J., Sarazin, A., Marchais, A., Duvernois-Berthet, E., et al. (2012). ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data. Bioinformatics 28, 3147-3149. doi:10.1093/bioinformatics/bts587
-
(2012)
Bioinformatics
, vol.28
, pp. 3147-3149
-
-
Chen, C.-J.1
Servant, N.2
Toedling, J.3
Sarazin, A.4
Marchais, A.5
Duvernois-Berthet, E.6
-
7
-
-
84857377692
-
Optimizing a massive parallel sequencing workflow for quantitative miRNA expression analysis
-
Cordero, F., Beccuti, M., Arigoni, M., Donatelli, S., and Calogero, R. A. (2012). Optimizing a massive parallel sequencing workflow for quantitative miRNA expression analysis. PLoS ONE 7:e31630. doi:10.1371/journal.pone.0031630
-
(2012)
PLoS ONE
, vol.7
-
-
Cordero, F.1
Beccuti, M.2
Arigoni, M.3
Donatelli, S.4
Calogero, R.A.5
-
8
-
-
0014937223
-
Central dogma of molecular biology
-
Crick, F. (1970). Central dogma of molecular biology. Nature 227, 561-563. doi:10.1038/227561a0
-
(1970)
Nature
, vol.227
, pp. 561-563
-
-
Crick, F.1
-
9
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
-
Derrien, T., Johnson, R., Bussotti, G., Tanzer, A., Djebali, S., Tilgner, H., et al. (2012). The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 22, 1775-1789. doi:10.1101/gr.132159.111
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
-
10
-
-
0035656688
-
Non-coding RNA genes and the modern RNA world
-
Eddy, S. R. (2001). Non-coding RNA genes and the modern RNA world. Nat. Rev. Genet. 2, 919-929. doi:10.1038/35103511
-
(2001)
Nat. Rev. Genet
, vol.2
, pp. 919-929
-
-
Eddy, S.R.1
-
11
-
-
45449096267
-
Tuning in to the signals: noncoding sequence conservation in vertebrate genomes
-
Elgar, G., and Vavouri, T. (2008). Tuning in to the signals: noncoding sequence conservation in vertebrate genomes. Trends Genet. 24, 344-352. doi:10.1016/j.tig.2008.04.005
-
(2008)
Trends Genet
, vol.24
, pp. 344-352
-
-
Elgar, G.1
Vavouri, T.2
-
12
-
-
79960019676
-
DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments
-
Fasold, M., Langenberger, D., Binder, H., Stadler, P. F., and Hoffmann, S. (2011). DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments. Nucleic Acids Res. 39, W112-W117. doi:10.1093/nar/gkr357
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W112-W117
-
-
Fasold, M.1
Langenberger, D.2
Binder, H.3
Stadler, P.F.4
Hoffmann, S.5
-
13
-
-
0032545933
-
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
-
Fire, A., Xu, S., Montgomery, M. K., Kostas, S. A., Driver, S. E., and Mello, C. C. (1998). Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391, 806-811. doi:10.1038/35888
-
(1998)
Nature
, vol.391
, pp. 806-811
-
-
Fire, A.1
Xu, S.2
Montgomery, M.K.3
Kostas, S.A.4
Driver, S.E.5
Mello, C.C.6
-
14
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
Friedländer, M. R., Chen, W., Adamidi, C., Maaskola, J., Einspanier, R., Knespel, S., et al. (2008). Discovering microRNAs from deep sequencing data using miRDeep. Nat. Biotechnol. 26, 407-415. doi:10.1038/nbt1394
-
(2008)
Nat. Biotechnol
, vol.26
, pp. 407-415
-
-
Friedländer, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
Knespel, S.6
-
15
-
-
84855293838
-
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
-
Friedländer, M. R., Mackowiak, S. D., Li, N., Chen, W., and Rajewsky, N. (2012). miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res. 40, 37-52. doi:10.1093/nar/gkr688
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 37-52
-
-
Friedländer, M.R.1
Mackowiak, S.D.2
Li, N.3
Chen, W.4
Rajewsky, N.5
-
16
-
-
84937578024
-
CIRI: an efficient and unbiased algorithm for de novo circular RNA identification
-
Gao, Y., Wang, J., and Zhao, F. (2015). CIRI: an efficient and unbiased algorithm for de novo circular RNA identification. Genome Biol. 16, 4. doi:10.1186/s13059-014-0571-3
-
(2015)
Genome Biol
, vol.16
, pp. 4
-
-
Gao, Y.1
Wang, J.2
Zhao, F.3
-
17
-
-
36849148382
-
Origin of life: the RNA world
-
Gilbert, W. (1986). Origin of life: the RNA world. Nature 319, 618-618. doi:10.1038/319618a0
-
(1986)
Nature
, vol.319
, pp. 618-618
-
-
Gilbert, W.1
-
18
-
-
77952148742
-
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
-
Guttman, M., Garber, M., Levin, J. Z., Donaghey, J., Robinson, J., Adiconis, X., et al. (2010). Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat. Biotechnol. 28, 503-510. doi:10.1038/nbt.1633
-
(2010)
Nat. Biotechnol
, vol.28
, pp. 503-510
-
-
Guttman, M.1
Garber, M.2
Levin, J.Z.3
Donaghey, J.4
Robinson, J.5
Adiconis, X.6
-
19
-
-
77955298482
-
baySeq: empirical Bayesian methods for identifying differential expression in sequence count data
-
Hardcastle, T. J., and Kelly, K. A. (2010). baySeq: empirical Bayesian methods for identifying differential expression in sequence count data. BMC Bioinformatics 11:422. doi:10.1186/1471-2105-11-422
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 422
-
-
Hardcastle, T.J.1
Kelly, K.A.2
-
20
-
-
84883480053
-
miRspring: a compact standalone research tool for analyzing miRNA-seq data
-
Humphreys, D. T., and Suter, C. M. (2013). miRspring: a compact standalone research tool for analyzing miRNA-seq data. Nucleic Acids Res. 41, e147-e147. doi:10.1093/nar/gkt485
-
(2013)
Nucleic Acids Res
, vol.41
, pp. e147-e147
-
-
Humphreys, D.T.1
Suter, C.M.2
-
21
-
-
84862239446
-
Novel insight into the non-coding repertoire through deep sequencing analysis
-
Isakov, O., Ronen, R., Kovarsky, J., Gabay, A., Gan, I., Modai, S., et al. (2012). Novel insight into the non-coding repertoire through deep sequencing analysis. Nucleic Acids Res. 40, e86. doi:10.1093/nar/gks228
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Isakov, O.1
Ronen, R.2
Kovarsky, J.3
Gabay, A.4
Gan, I.5
Modai, S.6
-
22
-
-
84872531655
-
Circular RNAs are abundant, conserved, and associated with ALU repeats
-
Jeck, W. R., Sorrentino, J. A., Wang, K., Slevin, M. K., Burd, C. E., Liu, J., et al. (2013). Circular RNAs are abundant, conserved, and associated with ALU repeats. RNA 19, 141-157. doi:10.1261/rna.035667.112
-
(2013)
RNA
, vol.19
, pp. 141-157
-
-
Jeck, W.R.1
Sorrentino, J.A.2
Wang, K.3
Slevin, M.K.4
Burd, C.E.5
Liu, J.6
-
23
-
-
84965186421
-
LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data
-
Jiang, Q., Ma, R., Wang, J., Wu, X., Jin, S., Peng, J., et al. (2015). LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data. BMC Genomics 16(Suppl. 3):S2. doi:10.1186/1471-2164-16-S3-S2
-
(2015)
BMC Genomics
, vol.16
, pp. S2
-
-
Jiang, Q.1
Ma, R.2
Wang, J.3
Wu, X.4
Jin, S.5
Peng, J.6
-
24
-
-
77349121900
-
Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data
-
Jung, C.-H., Hansen, M. A., Makunin, I. V., Korbie, D. J., and Mattick, J. S. (2010). Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data. BMC Genomics 11:77. doi:10.1186/1471-2164-11-77
-
(2010)
BMC Genomics
, vol.11
, pp. 77
-
-
Jung, C.-H.1
Hansen, M.A.2
Makunin, I.V.3
Korbie, D.J.4
Mattick, J.S.5
-
25
-
-
34250877841
-
A mammalian microRNA expression atlas based on small RNA library sequencing
-
Landgraf, P., Rusu, M., Sheridan, R., Sewer, A., Iovino, N., Aravin, A., et al. (2007). A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 129, 1401-1414. doi:10.1016/j.cell.2007.04.040
-
(2007)
Cell
, vol.129
, pp. 1401-1414
-
-
Landgraf, P.1
Rusu, M.2
Sheridan, R.3
Sewer, A.4
Iovino, N.5
Aravin, A.6
-
26
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M., and Salzberg, S. L. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25. doi:10.1186/gb-2009-10-3-r25
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
27
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee, R. C., Feinbaum, R. L., and Ambros, V. (1993). The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75, 843-854. doi:10.1016/0092-8674(93)90529-Y
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
28
-
-
84881516445
-
CoRAL: predicting non-coding RNAs from small RNA-sequencing data
-
Leung, Y. Y., Ryvkin, P., Ungar, L. H., Gregory, B. D., and Wang, L.-S. (2013). CoRAL: predicting non-coding RNAs from small RNA-sequencing data. Nucleic Acids Res. 41, e137-e137. doi:10.1093/nar/gkt426
-
(2013)
Nucleic Acids Res
, vol.41
, pp. e137-e137
-
-
Leung, Y.Y.1
Ryvkin, P.2
Ungar, L.H.3
Gregory, B.D.4
Wang, L.-S.5
-
29
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis, B. P., Burge, C. B., and Bartel, D. P. (2005). Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120, 15-20. doi:10.1016/j.cell.2004.12.035
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
30
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love, M. I., Huber, W., and Anders, S. (2014). Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15, 550. doi:10.1186/s13059-014-0550-8
-
(2014)
Genome Biol
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
31
-
-
79551575924
-
Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data
-
Lu, Z. J., Yip, K. Y., Wang, G., Shou, C., Hillier, L. W., Khurana, E., et al. (2011). Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data. Genome Res. 21, 276-285. doi:10.1101/gr.110189.110
-
(2011)
Genome Res
, vol.21
, pp. 276-285
-
-
Lu, Z.J.1
Yip, K.Y.2
Wang, G.3
Shou, C.4
Hillier, L.W.5
Khurana, E.6
-
32
-
-
84857568522
-
Identification of novel and known miRNAs in deep-sequencing data with miRDeep2
-
Chapter 12 Unit 12.10
-
Mackowiak, S. D. (2011). Identification of novel and known miRNAs in deep-sequencing data with miRDeep2. Curr. Protoc. Bioinformatics Chapter 12, Unit12.10. doi:10.1002/0471250953.bi1210s36
-
(2011)
Curr. Protoc. Bioinformatics
-
-
Mackowiak, S.D.1
-
33
-
-
79957665988
-
Microarrays, deep sequencing and the true measure of the transcriptome
-
Malone, J. H., and Oliver, B. (2011). Microarrays, deep sequencing and the true measure of the transcriptome. BMC Biol. 9:34. doi:10.1186/1741-7007-9-34
-
(2011)
BMC Biol
, vol.9
, pp. 34
-
-
Malone, J.H.1
Oliver, B.2
-
34
-
-
0035195942
-
Non-coding RNAs: the architects of eukaryotic complexity
-
Mattick, J. S. (2001). Non-coding RNAs: the architects of eukaryotic complexity. EMBO Rep. 2, 986-991. doi:10.1093/embo-reports/kve230
-
(2001)
EMBO Rep
, vol.2
, pp. 986-991
-
-
Mattick, J.S.1
-
35
-
-
84855564475
-
Next-generation sequencing for cancer diagnostics: a practical perspective
-
Meldrum, C., Doyle, M. A., and Tothill, R. W. (2011). Next-generation sequencing for cancer diagnostics: a practical perspective. Clin. Biochem. Rev. 32, 177-195.
-
(2011)
Clin. Biochem. Rev
, vol.32
, pp. 177-195
-
-
Meldrum, C.1
Doyle, M.A.2
Tothill, R.W.3
-
36
-
-
84875369248
-
Circular RNAs are a large class of animal RNAs with regulatory potency
-
Memczak, S., Jens, M., Elefsinioti, A., Torti, F., Krueger, J., Rybak, A., et al. (2013). Circular RNAs are a large class of animal RNAs with regulatory potency. Nature 495, 333-338. doi:10.1038/nature11928
-
(2013)
Nature
, vol.495
, pp. 333-338
-
-
Memczak, S.1
Jens, M.2
Elefsinioti, A.3
Torti, F.4
Krueger, J.5
Rybak, A.6
-
37
-
-
84936803960
-
Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs
-
Musacchia, F., Basu, S., Petrosino, G., Salvemini, M., and Sanges, R. (2015). Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs. Bioinformatics. doi:10.1093/bioinformatics/btv106
-
(2015)
Bioinformatics
-
-
Musacchia, F.1
Basu, S.2
Petrosino, G.3
Salvemini, M.4
Sanges, R.5
-
38
-
-
84922069304
-
plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants
-
Patra, D., Fasold, M., Langenberger, D., Steger, G., Grosse, I., and Stadler, P. F. (2014). plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants. Front Plant Sci 5:708. doi:10.3389/fpls.2014.00708
-
(2014)
Front Plant Sci
, vol.5
, pp. 708
-
-
Patra, D.1
Fasold, M.2
Langenberger, D.3
Steger, G.4
Grosse, I.5
Stadler, P.F.6
-
39
-
-
84857836107
-
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
-
Pauli, A., Valen, E., Lin, M. F., Garber, M., Vastenhouw, N. L., Levin, J. Z., et al. (2012). Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis. Genome Res. 22, 577-591. doi:10.1101/gr.133009.111
-
(2012)
Genome Res
, vol.22
, pp. 577-591
-
-
Pauli, A.1
Valen, E.2
Lin, M.F.3
Garber, M.4
Vastenhouw, N.L.5
Levin, J.Z.6
-
40
-
-
60149099385
-
Evolution and functions of long noncoding RNAs
-
Ponting, C. P., Oliver, P. L., and Reik, W. (2009). Evolution and functions of long noncoding RNAs. Cell 136, 629-641. doi:10.1016/j.cell.2009.02.006
-
(2009)
Cell
, vol.136
, pp. 629-641
-
-
Ponting, C.P.1
Oliver, P.L.2
Reik, W.3
-
41
-
-
75249087100
-
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M. D., McCarthy, D. J., and Smyth, G. K. (2010). edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140. doi:10.1093/bioinformatics/btp616
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
42
-
-
77957779549
-
miRNAkey: a software for microRNA deep sequencing analysis
-
Ronen, R., Gan, I., Modai, S., Sukacheov, A., Dror, G., Halperin, E., et al. (2010). miRNAkey: a software for microRNA deep sequencing analysis. Bioinformatics 26, 2615-2616. doi:10.1093/bioinformatics/btq493
-
(2010)
Bioinformatics
, vol.26
, pp. 2615-2616
-
-
Ronen, R.1
Gan, I.2
Modai, S.3
Sukacheov, A.4
Dror, G.5
Halperin, E.6
-
43
-
-
84863045982
-
Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types
-
Salzman, J., Gawad, C., Wang, P. L., Lacayo, N., and Brown, P. O. (2012). Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types. PLoS ONE 7:e30733. doi:10.1371/journal.pone.0030733
-
(2012)
PLoS ONE
, vol.7
-
-
Salzman, J.1
Gawad, C.2
Wang, P.L.3
Lacayo, N.4
Brown, P.O.5
-
44
-
-
84897431152
-
Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing
-
Soreq, L., Guffanti, A., Salomonis, N., Simchovitz, A., Israel, Z., Bergman, H., et al. (2014). Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing. PLoS Comput. Biol. 10:e1003517. doi:10.1371/journal.pcbi.1003517
-
(2014)
PLoS Comput. Biol
, vol.10
-
-
Soreq, L.1
Guffanti, A.2
Salomonis, N.3
Simchovitz, A.4
Israel, Z.5
Bergman, H.6
-
45
-
-
84877357792
-
iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data
-
Sun, K., Chen, X., Jiang, P., Song, X., Wang, H., and Sun, H. (2013). iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data. BMC Genomics 14(Suppl. 2):S7. doi:10.1186/1471-2164-14-S2-S7
-
(2013)
BMC Genomics
, vol.14
-
-
Sun, K.1
Chen, X.2
Jiang, P.3
Song, X.4
Wang, H.5
Sun, H.6
-
46
-
-
84870899078
-
Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study
-
Sun, L., Zhang, Z., Bailey, T. L., and Perkins, A. C. (2012). Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study. Bioinformatics 13, 331. doi:10.1186/1471-2105-13-331
-
(2012)
Bioinformatics
, vol.13
, pp. 331
-
-
Sun, L.1
Zhang, Z.2
Bailey, T.L.3
Perkins, A.C.4
-
47
-
-
57149085481
-
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
-
't Hoen, P. A. C., Ariyurek, Y., Thygesen, H. H., Vreugdenhil, E., Vossen, R. H. A. M., de Menezes, R. X., et al. (2008). Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res 36, e141.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
't Hoen, P.A.C.1
Ariyurek, Y.2
Thygesen, H.H.3
Vreugdenhil, E.4
Vossen, R.H.A.M.5
de Menezes, R.X.6
-
48
-
-
37549032176
-
RNA takes center stage
-
Todd, G., and Karbstein, K. (2007). RNA takes center stage. Biopolymers 87, 275-278. doi:10.1002/bip.20824
-
(2007)
Biopolymers
, vol.87
, pp. 275-278
-
-
Todd, G.1
Karbstein, K.2
-
49
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
Wang, Z., Gerstein, M., and Snyder, M. (2009). RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet. 10, 57-63. doi:10.1038/nrg2484
-
(2009)
Nat. Rev. Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
50
-
-
84886422310
-
RNA-CODE: a noncoding RNA classification tool for short reads in NGS data lacking reference genomes
-
Yuan, C., and Sun, Y. (2013). RNA-CODE: a noncoding RNA classification tool for short reads in NGS data lacking reference genomes. PLoS ONE 8:e77596. doi:10.1371/journal.pone.0077596
-
(2013)
PLoS ONE
, vol.8
-
-
Yuan, C.1
Sun, Y.2
-
51
-
-
84864153006
-
CPSS: a computational platform for the analysis of small RNA deep sequencing data
-
Zhang, Y., Xu, B., Yang, Y., Ban, R., Zhang, H., Jiang, X., et al. (2012). CPSS: a computational platform for the analysis of small RNA deep sequencing data. Bioinformatics 28, 1925-1927. doi:10.1093/bioinformatics/bts282
-
(2012)
Bioinformatics
, vol.28
, pp. 1925-1927
-
-
Zhang, Y.1
Xu, B.2
Yang, Y.3
Ban, R.4
Zhang, H.5
Jiang, X.6
-
52
-
-
82455187980
-
Small RNA transcriptome investigation based on next-generation sequencing technology
-
Zhou, L., Li, X., Liu, Q., Zhao, F., and Wu, J. (2011). Small RNA transcriptome investigation based on next-generation sequencing technology. J. Genet. Genomics 38, 505-513. doi:10.1016/j.jgg.2011.08.006
-
(2011)
J. Genet. Genomics
, vol.38
, pp. 505-513
-
-
Zhou, L.1
Li, X.2
Liu, Q.3
Zhao, F.4
Wu, J.5
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