Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data

Genome Research

Volumn 21, Issue 2, 2011, Pages 276-285

  Lu, Zhi John ^a   Yip, Kevin Y ^a,b   Wang, Guilin ^c   Shou, Chong ^a   Hillier, LaDeana W ^d   Khurana, Ekta ^a   Agarwal, Ashish ^a,e   Auerbach, Raymond ^a   Rozowsky, Joel ^a   Cheng, Chao ^a   Kato, Masaomi ^a   Miller, David M ^f   Slack, Frank ^a   Snyder, Michael ^g   Waterston, Robert H ^d   Reinke, Valerie ^c   Gerstein, Mark B ^a,e  

^a YALE UNIVERSITY   (United States)

^b CHINESE UNIVERSITY OF HONG KONG   (Hong Kong)

^c YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

^e Yale University   (United States)

^f VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

^g STANFORD UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEIC ACID; SPACER DNA; TRANSCRIPTION FACTOR; UNTRANSLATED RNA;

ARTICLE; CAENORHABDITIS ELEGANS; CONTROLLED STUDY; GENE IDENTIFICATION; GENETIC CONSERVATION; GENETIC IDENTIFICATION; GENOME; HIGH THROUGHPUT SCREENING; MACHINE LEARNING; MICROARRAY ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN SECONDARY STRUCTURE; PROTEIN STABILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SEQUENCE; VALIDATION PROCESS;

ALGORITHMS; ANIMALS; BINDING SITES; CAENORHABDITIS ELEGANS; DNA, INTERGENIC; GENE EXPRESSION PROFILING; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MOLECULAR SEQUENCE ANNOTATION; NUCLEIC ACID CONFORMATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RNA POLYMERASE II; RNA, UNTRANSLATED; TRANSCRIPTION FACTORS;

CAENORHABDITIS ELEGANS;

EID: 79551575924     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.110189.110     Document Type: Article

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