-
1
-
-
12144289425
-
Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission
-
Derdeyn CA, Decker JM, Bibollet-Ruche F, Mokili JL, Muldoon M, Denham SA, et al. Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission. Science. 2004 Mar. 26;303(5666):2019–22. 15044802
-
(2004)
Science
, vol.303
, Issue.5666
, pp. 2019-2022
-
-
Derdeyn, C.A.1
Decker, J.M.2
Bibollet-Ruche, F.3
Mokili, J.L.4
Muldoon, M.5
Denham, S.A.6
-
2
-
-
44649102135
-
Identification and characterisation of transmitted and early founder virus envelopes in primary HIV-1 infection
-
Keele BF, Giorgi EE, Salazar-Gonzalez JF, Decker JM, Pham KT, Salazar MG, et al. Identification and characterisation of transmitted and early founder virus envelopes in primary HIV-1 infection. P Natl Acad Sci Usa. 2008;105(21):7552–7.
-
(2008)
P Natl Acad Sci Usa
, vol.105
, Issue.21
, pp. 7552-7557
-
-
Keele, B.F.1
Giorgi, E.E.2
Salazar-Gonzalez, J.F.3
Decker, J.M.4
Pham, K.T.5
Salazar, M.G.6
-
3
-
-
59249096215
-
Inflammatory Genital Infections Mitigate a Severe Genetic Bottleneck in Heterosexual Transmission of Subtype A and C HIV-1
-
Haaland RE, Hawkins PA, Salazar-Gonzalez J, Johnson A, Tichacek A, Karita E, Trkola A, et al. Inflammatory Genital Infections Mitigate a Severe Genetic Bottleneck in Heterosexual Transmission of Subtype A and C HIV-1. PLoS Pathog. 2009 Jan. 23;5(1):e1000274. doi: 10.1371/journal.ppat.1000274 19165325
-
(2009)
PLoS Pathog
, vol.5
, Issue.1
, pp. 1000274
-
-
Haaland, R.E.1
Hawkins, P.A.2
Salazar-Gonzalez, J.3
Johnson, A.4
Tichacek, A.5
Karita, E.6
Trkola, A.7
-
4
-
-
66049139947
-
Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection
-
Salazar-Gonzalez JF, Salazar MG, Keele BF, Learn GH, Giorgi EE, Li H, et al. Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection. Journal of Experimental Medicine. 2009 Jun. 8;206(6):1273–89. doi: 10.1084/jem.20090378 19487424
-
(2009)
Journal of Experimental Medicine
, vol.206
, Issue.6
, pp. 1273-1289
-
-
Salazar-Gonzalez, J.F.1
Salazar, M.G.2
Keele, B.F.3
Learn, G.H.4
Giorgi, E.E.5
Li, H.6
-
5
-
-
81755187039
-
Role of donor genital tract HIV-1 diversity in the transmission bottleneck
-
Boeras DI, Hraber PT, Hurlston M, Evans-Strickfaden T, Bhattacharya T, Giorgi EE, et al. Role of donor genital tract HIV-1 diversity in the transmission bottleneck. Proceedings of the National Academy of Sciences. 2011 Nov. 7.
-
(2011)
Proceedings of the National Academy of Sciences
-
-
Boeras, D.I.1
Hraber, P.T.2
Hurlston, M.3
Evans-Strickfaden, T.4
Bhattacharya, T.5
Giorgi, E.E.6
-
6
-
-
84879958709
-
Sexually-Transmitted/Founder HIV-1 Cannot Be Directly Predicted from Plasma or PBMC-Derived Viral Quasispecies in the Transmitting Partner
-
Frange P, Meyer L, Jung M, Goujard C, Zucman D, Abel S, Mammano F, et al. Sexually-Transmitted/Founder HIV-1 Cannot Be Directly Predicted from Plasma or PBMC-Derived Viral Quasispecies in the Transmitting Partner. Plos One. 2013 Jul. 9;8(7):e69144. doi: 10.1371/journal.pone.0069144 23874894
-
(2013)
Plos One
, vol.8
, Issue.7
, pp. 69144
-
-
Frange, P.1
Meyer, L.2
Jung, M.3
Goujard, C.4
Zucman, D.5
Abel, S.6
Mammano, F.7
-
7
-
-
84904114340
-
Selection bias at the heterosexual HIV-1 transmission bottleneck
-
Carlson JM, Schaefer M, Monaco DC, Batorsky R, Claiborne DT, Prince J, et al. Selection bias at the heterosexual HIV-1 transmission bottleneck. Science. 2014 Jul. 10;345(6193):1254031–1. doi: 10.1126/science.1254031 25013080
-
(2014)
Science
, vol.345
, Issue.6193
, pp. 1254031
-
-
Carlson, J.M.1
Schaefer, M.2
Monaco, D.C.3
Batorsky, R.4
Claiborne, D.T.5
Prince, J.6
-
8
-
-
61849171106
-
Selection of HIV Variants with Signature Genotypic Characteristics during Heterosexual Transmission
-
Sagar M, Laeyendecker O, Lee S, Gamiel J, Wawer MJ, Gray RH, et al. Selection of HIV Variants with Signature Genotypic Characteristics during Heterosexual Transmission. J Infect Dis. 2009 Feb. 15;199(4):580–9. doi: 10.1086/596557 19143562
-
(2009)
J Infect Dis
, vol.199
, Issue.4
, pp. 580-589
-
-
Sagar, M.1
Laeyendecker, O.2
Lee, S.3
Gamiel, J.4
Wawer, M.J.5
Gray, R.H.6
-
9
-
-
84890920582
-
HIV-1 envelope replication and α4β7 utilization among newly infected subjects and their corresponding heterosexual partners
-
Pena-Cruz V, Etemad B, Chatziandreou N, Nyein PH, Stock S, Reynolds SJ, et al. HIV-1 envelope replication and α4β7 utilization among newly infected subjects and their corresponding heterosexual partners. Retrovirology. 2013;10:162. doi: 10.1186/1742-4690-10-162 24369910
-
(2013)
Retrovirology
, vol.10
, pp. 162
-
-
Pena-Cruz, V.1
Etemad, B.2
Chatziandreou, N.3
Nyein, P.H.4
Stock, S.5
Reynolds, S.J.6
-
10
-
-
79952232940
-
The Genotype of Early-Transmitting HIV gp120s Promotes α4β7 –Reactivity, Revealing α4β7+/CD4+ T cells As Key Targets in Mucosal Transmission
-
Nawaz F, Cicala C, van Ryk D, Block KE, Jelicic K, McNally JP, Trkola A, et al. The Genotype of Early-Transmitting HIV gp120s Promotes α4β7 –Reactivity, Revealing α4β7+/CD4+ T cells As Key Targets in Mucosal Transmission. PLoS Pathog. 2011 Feb. 24;7(2):e1001301. doi: 10.1371/journal.ppat.1001301 21383973
-
(2011)
PLoS Pathog
, vol.7
, Issue.2
, pp. 1001301
-
-
Nawaz, F.1
Cicala, C.2
van Ryk, D.3
Block, K.E.4
Jelicic, K.5
McNally, J.P.6
Trkola, A.7
-
11
-
-
80053452761
-
Recurrent Signature Patterns in HIV-1 B Clade Envelope Glycoproteins Associated with either Early or Chronic Infections
-
Gnanakaran S, Bhattacharya T, Daniels M, Keele BF, Hraber PT, Lapedes AS, Young JAT, et al. Recurrent Signature Patterns in HIV-1 B Clade Envelope Glycoproteins Associated with either Early or Chronic Infections. PLoS Pathog. 2011 Sep. 29;7(9):e1002209. doi: 10.1371/journal.ppat.1002209 21980282
-
(2011)
PLoS Pathog
, vol.7
, Issue.9
, pp. 1002209
-
-
Gnanakaran, S.1
Bhattacharya, T.2
Daniels, M.3
Keele, B.F.4
Hraber, P.T.5
Lapedes, A.S.6
Young, J.A.T.7
-
12
-
-
84943567553
-
Enhanced Fusion and Virion Incorporation for HIV-1 Subtype C Envelope Glycoproteins with Compact V1/V2 Domains
-
Cavrois M, Neidleman J, Santiago ML, Derdeyn CA, Hunter E, Greene WC, Enhanced Fusion and Virion Incorporation for HIV-1 Subtype C Envelope Glycoproteins with Compact V1/V2 Domains. J Virol. 2013 Dec. 11.
-
(2013)
J Virol
-
-
Cavrois, M.1
Neidleman, J.2
Santiago, M.L.3
Derdeyn, C.A.4
Hunter, E.5
Greene, W.C.6
-
13
-
-
84876867850
-
Phenotypic properties of transmitted founder HIV-1
-
Parrish NF, Gao F, Li H, Giorgi EE, Barbian HJ, Parrish EH, et al. Phenotypic properties of transmitted founder HIV-1. Proceedings of the National Academy of Sciences. 2013 Apr. 23;110(17):6626–33.
-
(2013)
Proceedings of the National Academy of Sciences
, vol.110
, Issue.17
, pp. 6626-6633
-
-
Parrish, N.F.1
Gao, F.2
Li, H.3
Giorgi, E.E.4
Barbian, H.J.5
Parrish, E.H.6
-
14
-
-
84857830668
-
Generation of Transmitted/Founder HIV-1 Infectious Molecular Clones and Characterization of Their Replication Capacity in CD4 T Lymphocytes and Monocyte-Derived Macrophages
-
Ochsenbauer C, Edmonds TG, Ding H, Keele BF, Decker J, Salazar MG, et al. Generation of Transmitted/Founder HIV-1 Infectious Molecular Clones and Characterization of Their Replication Capacity in CD4 T Lymphocytes and Monocyte-Derived Macrophages. J Virol. 2012 Feb. 11;86(5):2715–28. doi: 10.1128/JVI.06157-11 22190722
-
(2012)
J Virol
, vol.86
, Issue.5
, pp. 2715-2728
-
-
Ochsenbauer, C.1
Edmonds, T.G.2
Ding, H.3
Keele, B.F.4
Decker, J.5
Salazar, M.G.6
-
15
-
-
42649129348
-
Env length and N-linked glycosylation following transmission of human immunodeficiency virus Type 1 subtype B viruses
-
Liu Y, Curlin ME, Diem K, Zhao H, Ghosh AK, Zhu H, et al. Env length and N-linked glycosylation following transmission of human immunodeficiency virus Type 1 subtype B viruses. Virology. 2008 May;374(2):229–33. doi: 10.1016/j.virol.2008.01.029 18314154
-
(2008)
Virology
, vol.374
, Issue.2
, pp. 229-233
-
-
Liu, Y.1
Curlin, M.E.2
Diem, K.3
Zhao, H.4
Ghosh, A.K.5
Zhu, H.6
-
16
-
-
84929490238
-
Molecular identification, cloning and characterization of transmitted/founder HIV-1 subtype A, D and A/D infectious molecular clones
-
Baalwa J, Wang S, Parrish NF, Decker JM, Keele BF, Learn GH, et al. Molecular identification, cloning and characterization of transmitted/founder HIV-1 subtype A, D and A/D infectious molecular clones. Virology. 2012 Nov.
-
(2012)
Virology
-
-
Baalwa, J.1
Wang, S.2
Parrish, N.F.3
Decker, J.M.4
Keele, B.F.5
Learn, G.H.6
-
17
-
-
84888776867
-
Relative resistance of HIV-1 founder viruses to control by interferon-alpha
-
Fenton-May AE, Dibben O, Emmerich T, Ding H, Pfafferott K, Aasa-Chapman MM, et al. Relative resistance of HIV-1 founder viruses to control by interferon-alpha. Retrovirology. 2013;10:146. doi: 10.1186/1742-4690-10-146 24299076
-
(2013)
Retrovirology
, vol.10
, pp. 146
-
-
Fenton-May, A.E.1
Dibben, O.2
Emmerich, T.3
Ding, H.4
Pfafferott, K.5
Aasa-Chapman, M.M.6
-
18
-
-
18144429071
-
Characterization of Human Immunodeficiency Virus Type 1 (HIV-1) Envelope Variation and Neutralizing Antibody Responses during Transmission of HIV-1 Subtype B
-
Frost SDW, Liu Y, Pond SLK, Chappey C, Wrin T, Petropoulos CJ, et al. Characterization of Human Immunodeficiency Virus Type 1 (HIV-1) Envelope Variation and Neutralizing Antibody Responses during Transmission of HIV-1 Subtype B. J Virol. 2005 Apr. 27;79(10):6523–7. 15858036
-
(2005)
J Virol
, vol.79
, Issue.10
, pp. 6523-6527
-
-
Frost, S.D.W.1
Liu, Y.2
Pond, S.L.K.3
Chappey, C.4
Wrin, T.5
Petropoulos, C.J.6
-
19
-
-
18144397438
-
Selection for Human Immunodeficiency Virus Type 1 Envelope Glycosylation Variants with Shorter V1-V2 Loop Sequences Occurs during Transmission of Certain Genetic Subtypes and May Impact Viral RNA Levels
-
Chohan B, Lang D, Sagar M, Korber B, Lavreys L, Richardson B, et al. Selection for Human Immunodeficiency Virus Type 1 Envelope Glycosylation Variants with Shorter V1-V2 Loop Sequences Occurs during Transmission of Certain Genetic Subtypes and May Impact Viral RNA Levels. J Virol. 2005 Apr. 27;79(10):6528–31. 15858037
-
(2005)
J Virol
, vol.79
, Issue.10
, pp. 6528-6531
-
-
Chohan, B.1
Lang, D.2
Sagar, M.3
Korber, B.4
Lavreys, L.5
Richardson, B.6
-
20
-
-
0028091755
-
Macrophage-tropic variants initiate human immunodeficiency virus type 1 infection after sexual, parenteral, and vertical transmission
-
van't Wout AB, Kootstra NA, Mulder-Kampinga GA, Albrecht-van Lent N, Scherpbier HJ, Veenstra J, et al. Macrophage-tropic variants initiate human immunodeficiency virus type 1 infection after sexual, parenteral, and vertical transmission. Journal of Clinical Investigation. 1994 Nov.;94(5):2060–7. 7962552
-
(1994)
Journal of Clinical Investigation
, vol.94
, Issue.5
, pp. 2060-2067
-
-
van't Wout, A.B.1
Kootstra, N.A.2
Mulder-Kampinga, G.A.3
Albrecht-van Lent, N.4
Scherpbier, H.J.5
Veenstra, J.6
-
21
-
-
84931441912
-
South African HIV-1 subtype C transmitted variants with a specific V2 motif show higher dependence on α4β7 for replication
-
Richardson SI, Gray ES, Mkhize NN, Sheward DJ, Lambson BE, Wibmer CK, et al. South African HIV-1 subtype C transmitted variants with a specific V2 motif show higher dependence on α4β7 for replication. Retrovirology. BioMed Central; 2015 Jun. 23;:1–16.
-
(2015)
Retrovirology. BioMed Central
, pp. 1-16
-
-
Richardson, S.I.1
Gray, E.S.2
Mkhize, N.N.3
Sheward, D.J.4
Lambson, B.E.5
Wibmer, C.K.6
-
22
-
-
84867562000
-
Previously Transmitted HIV-1 Strains Are Preferentially Selected During Subsequent Sexual Transmissions
-
Redd AD, Collinson-Streng AN, Chatziandreou N, Mullis CE, Laeyendecker O, Martens C, et al. Previously Transmitted HIV-1 Strains Are Preferentially Selected During Subsequent Sexual Transmissions. J Infect Dis. 2012 Oct. 8;206(9):1433–42. doi: 10.1093/infdis/jis503 22997233
-
(2012)
J Infect Dis
, vol.206
, Issue.9
, pp. 1433-1442
-
-
Redd, A.D.1
Collinson-Streng, A.N.2
Chatziandreou, N.3
Mullis, C.E.4
Laeyendecker, O.5
Martens, C.6
-
23
-
-
67749118313
-
Heterosexual transmission of human immunodeficiency virus type 1 subtype C: Macrophage tropism, alternative coreceptor use, and the molecular anatomy of CCR5 utilization
-
Isaacman-Beck J, Hermann EA, Yi Y, Ratcliffe SJ, Mulenga J, Allen S, et al. Heterosexual transmission of human immunodeficiency virus type 1 subtype C: Macrophage tropism, alternative coreceptor use, and the molecular anatomy of CCR5 utilization. J Virol. 2009 Aug.;83(16):8208–20. doi: 10.1128/JVI.00296-09 19515785
-
(2009)
J Virol
, vol.83
, Issue.16
, pp. 8208-8220
-
-
Isaacman-Beck, J.1
Hermann, E.A.2
Yi, Y.3
Ratcliffe, S.J.4
Mulenga, J.5
Allen, S.6
-
24
-
-
77950493667
-
Donor and recipient envs from heterosexual human immunodeficiency virus subtype C transmission pairs require high receptor levels for entry
-
Alexander M, Lynch R, Mulenga J, Allen S, Derdeyn CA, Hunter E, Donor and recipient envs from heterosexual human immunodeficiency virus subtype C transmission pairs require high receptor levels for entry. J Virol. 2010 Apr.;84(8):4100–4. doi: 10.1128/JVI.02068-09 20147398
-
(2010)
J Virol
, vol.84
, Issue.8
, pp. 4100-4104
-
-
Alexander, M.1
Lynch, R.2
Mulenga, J.3
Allen, S.4
Derdeyn, C.A.5
Hunter, E.6
-
25
-
-
84863696607
-
Transmitted/Founder and Chronic Subtype C HIV-1 Use CD4 and CCR5 Receptors with Equal Efficiency and Are Not Inhibited by Blocking the Integrin α4β7
-
Parrish NF, Wilen CB, Banks LB, Iyer SS, Pfaff JM, Salazar-Gonzalez JF, Trkola A, et al. Transmitted/Founder and Chronic Subtype C HIV-1 Use CD4 and CCR5 Receptors with Equal Efficiency and Are Not Inhibited by Blocking the Integrin α4β7. PLoS Pathog. 2012 May 31;8(5):e1002686. doi: 10.1371/journal.ppat.1002686 22693444
-
(2012)
PLoS Pathog
, vol.8
, Issue.5
, pp. 1002686
-
-
Parrish, N.F.1
Wilen, C.B.2
Banks, L.B.3
Iyer, S.S.4
Pfaff, J.M.5
Salazar-Gonzalez, J.F.6
Trkola, A.7
-
26
-
-
84907486073
-
Particle infectivity of HIV-1 full-length genome infectious molecular clones in a subtype C heterosexual transmission pair following high fidelity amplification and unbiased cloning
-
Deymier MJ, Claiborne DT, Ende Z, Ratner HK, Kilembe W, Allen S, et al. Particle infectivity of HIV-1 full-length genome infectious molecular clones in a subtype C heterosexual transmission pair following high fidelity amplification and unbiased cloning. Virology. 2014 Sep. 19;468-470C:454–61.
-
(2014)
Virology
, vol.468-470C
, pp. 454-461
-
-
Deymier, M.J.1
Claiborne, D.T.2
Ende, Z.3
Ratner, H.K.4
Kilembe, W.5
Allen, S.6
-
27
-
-
0036090585
-
Emergence of Resistant Human Immunodeficiency Virus Type 1 in Patients Receiving Fusion Inhibitor (T-20) Monotherapy
-
Wei X, Decker JM, Liu H, Zhang Z, Arani RB, Kilby JM, et al. Emergence of Resistant Human Immunodeficiency Virus Type 1 in Patients Receiving Fusion Inhibitor (T-20) Monotherapy. Antimicrobial Agents and Chemotherapy. 2002 Jun. 1;46(6):1896–905. 12019106
-
(2002)
Antimicrobial Agents and Chemotherapy
, vol.46
, Issue.6
, pp. 1896-1905
-
-
Wei, X.1
Decker, J.M.2
Liu, H.3
Zhang, Z.4
Arani, R.B.5
Kilby, J.M.6
-
28
-
-
0037456827
-
Antibody neutralization and escape by HIV-1
-
Wei X, Decker JM, Wang S, Hui H, Kappes JC, Wu X, et al. Antibody neutralization and escape by HIV-1. Nature. 2003 Mar. 20;422(6929):307–12. 12646921
-
(2003)
Nature
, vol.422
, Issue.6929
, pp. 307-312
-
-
Wei, X.1
Decker, J.M.2
Wang, S.3
Hui, H.4
Kappes, J.C.5
Wu, X.6
-
29
-
-
0034051289
-
Simian immunodeficiency virus rapidly penetrates the cervicovaginal mucosa after intravaginal inoculation and infects intraepithelial dendritic cells
-
Hu J, Gardner MB, Miller CJ, Simian immunodeficiency virus rapidly penetrates the cervicovaginal mucosa after intravaginal inoculation and infects intraepithelial dendritic cells. J Virol. 2000 Jul.;74(13):6087–95. 10846092
-
(2000)
J Virol
, vol.74
, Issue.13
, pp. 6087-6095
-
-
Hu, J.1
Gardner, M.B.2
Miller, C.J.3
-
30
-
-
84878528694
-
Comparison of Viral Env Proteins from Acute and Chronic Infections with Subtype C Human Immunodeficiency Virus Type 1 Identifies Differences in Glycosylation and CCR5 Utilization and Suggests a New Strategy for Immunogen Design
-
Ping LH, Joseph SB, Anderson JA, Abrahams MR, Salazar-Gonzalez JF, Kincer LP, et al. Comparison of Viral Env Proteins from Acute and Chronic Infections with Subtype C Human Immunodeficiency Virus Type 1 Identifies Differences in Glycosylation and CCR5 Utilization and Suggests a New Strategy for Immunogen Design. J Virol. 2013 Jun. 10;87(13):7218–33. doi: 10.1128/JVI.03577-12 23616655
-
(2013)
J Virol
, vol.87
, Issue.13
, pp. 7218-7233
-
-
Ping, L.H.1
Joseph, S.B.2
Anderson, J.A.3
Abrahams, M.R.4
Salazar-Gonzalez, J.F.5
Kincer, L.P.6
-
31
-
-
84876878971
-
Within-host and between-host evolutionary rates across the HIV-1 genome
-
Alizon S, Fraser C, Within-host and between-host evolutionary rates across the HIV-1 genome. Retrovirology. 2013;10:49. 23639104
-
(2013)
Retrovirology
, vol.10
, pp. 49
-
-
Alizon, S.1
Fraser, C.2
-
32
-
-
0025827529
-
Human immunodeficiency virus genetic variation that can escape cytotoxic T cell recognition
-
Phillips RE, Rowland-Jones S, Nixon DF, Gotch FM, Edwards JP, Ogunlesi AO, et al. Human immunodeficiency virus genetic variation that can escape cytotoxic T cell recognition. Nature. 1991 Dec. 12;354(6353):453–9. 1721107
-
(1991)
Nature
, vol.354
, Issue.6353
, pp. 453-459
-
-
Phillips, R.E.1
Rowland-Jones, S.2
Nixon, D.F.3
Gotch, F.M.4
Edwards, J.P.5
Ogunlesi, A.O.6
-
33
-
-
0037389643
-
Rapid evolution of the neutralizing antibody response to HIV type 1 infection
-
Richman DD, Wrin T, Little SJ, Petropoulos CJ, Rapid evolution of the neutralizing antibody response to HIV type 1 infection. P Natl Acad Sci Usa. 2003 Apr. 1;100(7):4144–9.
-
(2003)
P Natl Acad Sci Usa
, vol.100
, Issue.7
, pp. 4144-4149
-
-
Richman, D.D.1
Wrin, T.2
Little, S.J.3
Petropoulos, C.J.4
-
34
-
-
80052302577
-
Phenotypic and Immunologic Comparison of Clade B Transmitted/Founder and Chronic HIV-1 Envelope Glycoproteins
-
Wilen CB, Parrish NF, Pfaff JM, Decker JM, Henning EA, Haim H, et al. Phenotypic and Immunologic Comparison of Clade B Transmitted/Founder and Chronic HIV-1 Envelope Glycoproteins. J Virol. 2011 Aug. 8;85(17):8514–27. doi: 10.1128/JVI.00736-11 21715507
-
(2011)
J Virol
, vol.85
, Issue.17
, pp. 8514-8527
-
-
Wilen, C.B.1
Parrish, N.F.2
Pfaff, J.M.3
Decker, J.M.4
Henning, E.A.5
Haim, H.6
-
35
-
-
84870786421
-
Role of Transmitted Gag CTL Polymorphisms in Defining Replicative Capacity and Early HIV-1 Pathogenesis
-
Prince JL, Claiborne DT, Carlson JM, Schaefer M, Yu T, Lahki S, Lifson J, et al. Role of Transmitted Gag CTL Polymorphisms in Defining Replicative Capacity and Early HIV-1 Pathogenesis. PLoS Pathog. 2012 Nov. 29;8(11):e1003041. doi: 10.1371/journal.ppat.1003041 23209412
-
(2012)
PLoS Pathog
, vol.8
, Issue.11
, pp. 1003041
-
-
Prince, J.L.1
Claiborne, D.T.2
Carlson, J.M.3
Schaefer, M.4
Yu, T.5
Lahki, S.6
Lifson, J.7
-
36
-
-
77957194223
-
Gag-protease-mediated replication capacity in HIV-1 subtype C chronic infection: associations with HLA type and clinical parameters
-
Wright JK, Brumme ZL, Carlson JM, Heckerman D, Kadie CM, Brumme CJ, et al. Gag-protease-mediated replication capacity in HIV-1 subtype C chronic infection: associations with HLA type and clinical parameters. J Virol. 2010 Oct.;84(20):10820–31. doi: 10.1128/JVI.01084-10 20702636
-
(2010)
J Virol
, vol.84
, Issue.20
, pp. 10820-10831
-
-
Wright, J.K.1
Brumme, Z.L.2
Carlson, J.M.3
Heckerman, D.4
Kadie, C.M.5
Brumme, C.J.6
-
37
-
-
84923846505
-
Transmitted Virus Fitness and Host T Cell Responses Collectively Define Divergent Infection Outcomes in Two HIV-1 Recipients
-
Yue L, Pfafferott KJ, Baalwa J, Conrod K, Dong CC, Chui C, Douek DC, et al. Transmitted Virus Fitness and Host T Cell Responses Collectively Define Divergent Infection Outcomes in Two HIV-1 Recipients. PLoS Pathog. 2015 Jan. 8;11(1):e1004565. doi: 10.1371/journal.ppat.1004565 25569444
-
(2015)
PLoS Pathog
, vol.11
, Issue.1
, pp. 1004565
-
-
Yue, L.1
Pfafferott, K.J.2
Baalwa, J.3
Conrod, K.4
Dong, C.C.5
Chui, C.6
Douek, D.C.7
-
38
-
-
84925434838
-
Replicative fitness of transmitted HIV-1 drives acute immune activation, proviral load in memory CD4 +T cells, and disease progression
-
Claiborne DT, Prince JL, Scully E, Macharia G, Micci L, Lawson B, et al. Replicative fitness of transmitted HIV-1 drives acute immune activation, proviral load in memory CD4 +T cells, and disease progression. Proceedings of the National Academy of Sciences. 2015 Feb. 17;:201421607.
-
(2015)
Proceedings of the National Academy of Sciences
, pp. 201421607
-
-
Claiborne, D.T.1
Prince, J.L.2
Scully, E.3
Macharia, G.4
Micci, L.5
Lawson, B.6
-
39
-
-
84923327486
-
An Evolutionary Role for HIV Latency in Enhancing Viral Transmission
-
Rouzine IM, Weinberger AD, Weinberger LS, An Evolutionary Role for HIV Latency in Enhancing Viral Transmission. Cell. Elsevier Inc; 2015 Feb. 26;160(5):1002–12.
-
(2015)
Cell. Elsevier Inc
, vol.160
, Issue.5
, pp. 1002-1012
-
-
Rouzine, I.M.1
Weinberger, A.D.2
Weinberger, L.S.3
-
40
-
-
25144479948
-
Temporal and anatomic relationship between virus replication and cytokine gene expression after vaginal simian immunodeficiency virus infection
-
Abel K, Rocke DM, Chohan B, Fritts L, Miller CJ, Temporal and anatomic relationship between virus replication and cytokine gene expression after vaginal simian immunodeficiency virus infection. J Virol. 2005 Oct.;79(19):12164–72. 16160143
-
(2005)
J Virol
, vol.79
, Issue.19
, pp. 12164-12172
-
-
Abel, K.1
Rocke, D.M.2
Chohan, B.3
Fritts, L.4
Miller, C.J.5
-
41
-
-
67349101763
-
Glycerol monolaurate prevents mucosal SIV transmission
-
Li Q, Estes JD, Schlievert PM, Duan L, Brosnahan AJ, Southern PJ, et al. Glycerol monolaurate prevents mucosal SIV transmission. Nature. 2009 Mar. 4;458(7241):1034–8. doi: 10.1038/nature07831 19262509
-
(2009)
Nature
, vol.458
, Issue.7241
, pp. 1034-1038
-
-
Li, Q.1
Estes, J.D.2
Schlievert, P.M.3
Duan, L.4
Brosnahan, A.J.5
Southern, P.J.6
-
42
-
-
84880428052
-
Gene Loss and Adaptation to Hominids Underlie the Ancient Origin of HIV-1
-
Etienne L, Hahn BH, Sharp PM, Matsen FA, Emerman M, Gene Loss and Adaptation to Hominids Underlie the Ancient Origin of HIV-1. Cell Host Microbe. Elsevier Inc; 2013 Jul. 17;14(1):85–92.
-
(2013)
Cell Host Microbe. Elsevier Inc
, vol.14
, Issue.1
, pp. 85-92
-
-
Etienne, L.1
Hahn, B.H.2
Sharp, P.M.3
Matsen, F.A.4
Emerman, M.5
-
43
-
-
84901933676
-
Type I interferon responses in rhesus macaques prevent SIV infection and slow disease progression
-
Sandler NG, Bosinger SE, Estes JD, Zhu RTR, Tharp GK, Boritz E, et al. Type I interferon responses in rhesus macaques prevent SIV infection and slow disease progression. Nature. Nature Publishing Group; 2014 Jul. 22;511(7511):601–5.
-
(2014)
Nature. Nature Publishing Group
, vol.511
, Issue.7511
, pp. 601-605
-
-
Sandler, N.G.1
Bosinger, S.E.2
Estes, J.D.3
Zhu, R.T.R.4
Tharp, G.K.5
Boritz, E.6
-
44
-
-
0026558049
-
Alpha interferon inhibits early stages of the human immunodeficiency virus type 1 replication cycle
-
Shirazi Y, Pitha PM, Alpha interferon inhibits early stages of the human immunodeficiency virus type 1 replication cycle. J Virol. 1992 Mar.;66(3):1321–8. 1738192
-
(1992)
J Virol
, vol.66
, Issue.3
, pp. 1321-1328
-
-
Shirazi, Y.1
Pitha, P.M.2
-
45
-
-
0028921351
-
Identification of human immunodeficiency virus primary isolates resistant to interferon-alpha and correlation of prevalence to disease progression
-
Künzi MS, Farzadegan H, Margolick JB, Vlahov D, Pitha PM, Identification of human immunodeficiency virus primary isolates resistant to interferon-alpha and correlation of prevalence to disease progression. J Infect Dis. 1995 Apr.;171(4):822–8. 7706808
-
(1995)
J Infect Dis
, vol.171
, Issue.4
, pp. 822-828
-
-
Künzi, M.S.1
Farzadegan, H.2
Margolick, J.B.3
Vlahov, D.4
Pitha, P.M.5
-
46
-
-
0026701048
-
In-vitro resistance to zidovudine and alpha-interferon in HIV-1 isolates from patients: correlations with treatment duration and response
-
Edlin BR, St Clair MH, Pitha PM, Whaling SM, King DM, Bitran JD, et al. In-vitro resistance to zidovudine and alpha-interferon in HIV-1 isolates from patients: correlations with treatment duration and response. Ann. Intern. Med. 1992 Sep. 15;117(6):457–60. 1503348
-
(1992)
Ann. Intern. Med
, vol.117
, Issue.6
, pp. 457-460
-
-
Edlin, B.R.1
St Clair, M.H.2
Pitha, P.M.3
Whaling, S.M.4
King, D.M.5
Bitran, J.D.6
-
47
-
-
0036133071
-
Molecular epidemiology of human immunodeficiency virus type 1 transmission in a heterosexual cohort of discordant couples in Zambia
-
Trask SA, Derdeyn CA, Fideli U, Chen Y, Meleth S, Kasolo F, et al. Molecular epidemiology of human immunodeficiency virus type 1 transmission in a heterosexual cohort of discordant couples in Zambia. J Virol. 2002 Jan.;76(1):397–405. 11739704
-
(2002)
J Virol
, vol.76
, Issue.1
, pp. 397-405
-
-
Trask, S.A.1
Derdeyn, C.A.2
Fideli, U.3
Chen, Y.4
Meleth, S.5
Kasolo, F.6
-
48
-
-
33746150392
-
Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes
-
Rousseau CM, Birditt BA, McKay AR, Stoddard JN, Lee TC, McLaughlin S, et al. Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes. J. Virol. Methods. 2006 Sep.;136(1–2):118–25. 16701907
-
(2006)
J. Virol. Methods
, vol.136
, Issue.1-2
, pp. 118-125
-
-
Rousseau, C.M.1
Birditt, B.A.2
McKay, A.R.3
Stoddard, J.N.4
Lee, T.C.5
McLaughlin, S.6
-
49
-
-
84943560031
-
Multiplexed highly-accurate DNA sequencing of closely-related HIV-1 variants using continuous long reads from single molecule, real-time sequencing
-
Dilernia DA, Chien JT, Monaco DC, Brown MPS, Ende Z, Deymier MJ, et al. Multiplexed highly-accurate DNA sequencing of closely-related HIV-1 variants using continuous long reads from single molecule, real-time sequencing. Nucleic Acids Res. 2015 Jun. 22. doi: 10.1093/nar/gkv630
-
(2015)
Nucleic Acids Res
-
-
Dilernia, D.A.1
Chien, J.T.2
Monaco, D.C.3
Brown, M.P.S.4
Ende, Z.5
Deymier, M.J.6
-
50
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC, MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004 Mar. 8;32(5):1792–7. 15034147
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
51
-
-
77954067056
-
DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites
-
Deng W, Maust B, Nickle D, Learn G, Liu Y, Heath L, et al. DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites. Biotech. 2010 May;48(5):405–8.
-
(2010)
Biotech
, vol.48
, Issue.5
, pp. 405-408
-
-
Deng, W.1
Maust, B.2
Nickle, D.3
Learn, G.4
Liu, Y.5
Heath, L.6
-
52
-
-
39849090643
-
HIV-Specific Probabilistic Models of Protein Evolution
-
Nickle DC, Heath L, Jensen MA, Gilbert PB, Mullins JI, Kosakovsky Pond SL, Pybus O, HIV-Specific Probabilistic Models of Protein Evolution. Plos One. 2007 Jun. 6;2(6):e503. 17551583
-
(2007)
Plos One
, vol.2
, Issue.6
, pp. 503
-
-
Nickle, D.C.1
Heath, L.2
Jensen, M.A.3
Gilbert, P.B.4
Mullins, J.I.5
Kosakovsky Pond, S.L.6
Pybus, O.7
-
53
-
-
84906875109
-
A Restriction Enzyme Based Cloning Method to Assess the In vitro Replication Capacity of HIV-1 Subtype C Gag-MJ4 Chimeric Viruses
-
Claiborne DT, Prince JL, Hunter E, A Restriction Enzyme Based Cloning Method to Assess the In vitro Replication Capacity of HIV-1 Subtype C Gag-MJ4 Chimeric Viruses. JoVE (Journal of Visualized Experiments). 2014;(90):e51506–6.
-
(2014)
JoVE (Journal of Visualized Experiments)
, Issue.90
, pp. 6
-
-
Claiborne, D.T.1
Prince, J.L.2
Hunter, E.3
-
54
-
-
84901262680
-
Lack of protection following passive transfer of polyclonal highly functional low-dose non-neutralizing antibodies
-
Dugast A-S, Chan Y, Hoffner M, Licht A, Nkolola J, Li H, et al. Lack of protection following passive transfer of polyclonal highly functional low-dose non-neutralizing antibodies. Plos One. 2014;9(5):e97229. doi: 10.1371/journal.pone.0097229 24820481
-
(2014)
Plos One
, vol.9
, Issue.5
, pp. 97229
-
-
Dugast, A.-S.1
Chan, Y.2
Hoffner, M.3
Licht, A.4
Nkolola, J.5
Li, H.6
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