-
1
-
-
0025183708
-
Basic local alignment search tool
-
S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
77950646448
-
Limelight on two HIV/SIV accessory proteins in macrophage infection: Is Vpx overshadowing Vpr?
-
D. Ayinde, C. Maudet, C. Transy, and F. Margottin-Goguet Limelight on two HIV/SIV accessory proteins in macrophage infection: is Vpx overshadowing Vpr? Retrovirology 7 2010 35
-
(2010)
Retrovirology
, vol.7
, pp. 35
-
-
Ayinde, D.1
Maudet, C.2
Transy, C.3
Margottin-Goguet, F.4
-
3
-
-
0038047665
-
Hybrid origin of SIV in chimpanzees
-
E. Bailes, F. Gao, F. Bibollet-Ruche, V. Courgnaud, M. Peeters, P.A. Marx, B.H. Hahn, and P.M. Sharp Hybrid origin of SIV in chimpanzees Science 300 2003 1713
-
(2003)
Science
, vol.300
, pp. 1713
-
-
Bailes, E.1
Gao, F.2
Bibollet-Ruche, F.3
Courgnaud, V.4
Peeters, M.5
Marx, P.A.6
Hahn, B.H.7
Sharp, P.M.8
-
4
-
-
84869170593
-
SAMHD1 restricts HIV-1 infection in resting CD4(+) T cells
-
H.M. Baldauf, X. Pan, E. Erikson, S. Schmidt, W. Daddacha, M. Burggraf, K. Schenkova, I. Ambiel, G. Wabnitz, and T. Gramberg SAMHD1 restricts HIV-1 infection in resting CD4(+) T cells Nat. Med. 18 2012 1682 1687
-
(2012)
Nat. Med.
, vol.18
, pp. 1682-1687
-
-
Baldauf, H.M.1
Pan, X.2
Erikson, E.3
Schmidt, S.4
Daddacha, W.5
Burggraf, M.6
Schenkova, K.7
Ambiel, I.8
Wabnitz, G.9
Gramberg, T.10
-
6
-
-
77954684927
-
The SOCS-box of HIV-1 Vif interacts with ElonginBC by induced-folding to recruit its Cul5-containing ubiquitin ligase complex
-
J.R. Bergeron, H. Huthoff, D.A. Veselkov, R.L. Beavil, P.J. Simpson, S.J. Matthews, M.H. Malim, and M.R. Sanderson The SOCS-box of HIV-1 Vif interacts with ElonginBC by induced-folding to recruit its Cul5-containing ubiquitin ligase complex PLoS Pathog. 6 2010 e1000925
-
(2010)
PLoS Pathog.
, vol.6
, pp. 1000925
-
-
Bergeron, J.R.1
Huthoff, H.2
Veselkov, D.A.3
Beavil, R.L.4
Simpson, P.J.5
Matthews, S.J.6
Malim, M.H.7
Sanderson, M.R.8
-
7
-
-
58149237802
-
APOBEC3G inhibits elongation of HIV-1 reverse transcripts
-
K.N. Bishop, M. Verma, E.Y. Kim, S.M. Wolinsky, and M.H. Malim APOBEC3G inhibits elongation of HIV-1 reverse transcripts PLoS Pathog. 4 2008 e1000231
-
(2008)
PLoS Pathog.
, vol.4
, pp. 1000231
-
-
Bishop, K.N.1
Verma, M.2
Kim, E.Y.3
Wolinsky, S.M.4
Malim, M.H.5
-
8
-
-
67049158348
-
Fast statistical alignment
-
R.K. Bradley, A. Roberts, M. Smoot, S. Juvekar, J. Do, C. Dewey, I. Holmes, and L. Pachter Fast statistical alignment PLoS Comput. Biol. 5 2009 e1000392
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. 1000392
-
-
Bradley, R.K.1
Roberts, A.2
Smoot, M.3
Juvekar, S.4
Do, J.5
Dewey, C.6
Holmes, I.7
Pachter, L.8
-
9
-
-
33646167864
-
A simple and robust statistical test for detecting the presence of recombination
-
T.C. Bruen, H. Philippe, and D. Bryant A simple and robust statistical test for detecting the presence of recombination Genetics 172 2006 2665 2681
-
(2006)
Genetics
, vol.172
, pp. 2665-2681
-
-
Bruen, T.C.1
Philippe, H.2
Bryant, D.3
-
10
-
-
84875064882
-
Convergence and divergence in the evolution of the APOBEC3G-Vif interaction reveal ancient origins of simian immunodeficiency viruses
-
A.A. Compton, and M. Emerman Convergence and divergence in the evolution of the APOBEC3G-Vif interaction reveal ancient origins of simian immunodeficiency viruses PLoS Pathog. 9 2013 e1003135
-
(2013)
PLoS Pathog.
, vol.9
, pp. 1003135
-
-
Compton, A.A.1
Emerman, M.2
-
11
-
-
46549089412
-
The HIV-1 Vif PPLP motif is necessary for human APOBEC3G binding and degradation
-
J.P. Donahue, M.L. Vetter, N.A. Mukhtar, and R.T. D'Aquila The HIV-1 Vif PPLP motif is necessary for human APOBEC3G binding and degradation Virology 377 2008 49 53
-
(2008)
Virology
, vol.377
, pp. 49-53
-
-
Donahue, J.P.1
Vetter, M.L.2
Mukhtar, N.A.3
D'Aquila, R.T.4
-
12
-
-
84866740475
-
Evolutionary conflicts between viruses and restriction factors shape immunity
-
N.K. Duggal, and M. Emerman Evolutionary conflicts between viruses and restriction factors shape immunity Nat. Rev. Immunol. 12 2012 687 695
-
(2012)
Nat. Rev. Immunol.
, vol.12
, pp. 687-695
-
-
Duggal, N.K.1
Emerman, M.2
-
13
-
-
80055101936
-
The breadth of antiviral activity of Apobec3DE in chimpanzees has been driven by positive selection
-
N.K. Duggal, H.S. Malik, and M. Emerman The breadth of antiviral activity of Apobec3DE in chimpanzees has been driven by positive selection J. Virol. 85 2011 11361 11371
-
(2011)
J. Virol.
, vol.85
, pp. 11361-11371
-
-
Duggal, N.K.1
Malik, H.S.2
Emerman, M.3
-
14
-
-
80055082271
-
Accelerated profile HMM searches
-
S.R. Eddy Accelerated profile HMM searches PLoS Comput. Biol. 7 2011 e1002195
-
(2011)
PLoS Comput. Biol.
, vol.7
, pp. 1002195
-
-
Eddy, S.R.1
-
15
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
R.C. Edgar MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res. 32 2004 1792 1797
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
16
-
-
79959931985
-
HMMER web server: Interactive sequence similarity searching
-
WEB SERVER ISSUE
-
R.D. Finn, J. Clements, and S.R. Eddy HMMER web server: interactive sequence similarity searching Nucleic Acids Res. 39 Web Server issue 2011 W29 W37
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
17
-
-
6344291662
-
Further investigation of simian immunodeficiency virus Vif function in human cells
-
N.C. Gaddis, A.M. Sheehy, K.M. Ahmad, C.M. Swanson, K.N. Bishop, B.E. Beer, P.A. Marx, F. Gao, F. Bibollet-Ruche, B.H. Hahn, and M.H. Malim Further investigation of simian immunodeficiency virus Vif function in human cells J. Virol. 78 2004 12041 12046
-
(2004)
J. Virol.
, vol.78
, pp. 12041-12046
-
-
Gaddis, N.C.1
Sheehy, A.M.2
Ahmad, K.M.3
Swanson, C.M.4
Bishop, K.N.5
Beer, B.E.6
Marx, P.A.7
Gao, F.8
Bibollet-Ruche, F.9
Hahn, B.H.10
Malim, M.H.11
-
18
-
-
0026710130
-
Human infection by genetically diverse SIVSM-related HIV-2 in west Africa
-
F. Gao, L. Yue, A.T. White, P.G. Pappas, J. Barchue, A.P. Hanson, B.M. Greene, P.M. Sharp, G.M. Shaw, and B.H. Hahn Human infection by genetically diverse SIVSM-related HIV-2 in west Africa Nature 358 1992 495 499
-
(1992)
Nature
, vol.358
, pp. 495-499
-
-
Gao, F.1
Yue, L.2
White, A.T.3
Pappas, P.G.4
Barchue, J.5
Hanson, A.P.6
Greene, B.M.7
Sharp, P.M.8
Shaw, G.M.9
Hahn, B.H.10
-
19
-
-
84869996749
-
Insights into the dual activity of SIVmac239 Vif against human and African green monkey APOBEC3G
-
R. Gaur, and K. Strebel Insights into the dual activity of SIVmac239 Vif against human and African green monkey APOBEC3G PLoS ONE 7 2012 e48850
-
(2012)
PLoS ONE
, vol.7
, pp. 48850
-
-
Gaur, R.1
Strebel, K.2
-
20
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
S. Guindon, J.F. Dufayard, V. Lefort, M. Anisimova, W. Hordijk, and O. Gascuel New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 Syst. Biol. 59 2010 307 321
-
(2010)
Syst. Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
21
-
-
79959858243
-
Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein
-
K. Hrecka, C. Hao, M. Gierszewska, S.K. Swanson, M. Kesik-Brodacka, S. Srivastava, L. Florens, M.P. Washburn, and J. Skowronski Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein Nature 474 2011 658 661
-
(2011)
Nature
, vol.474
, pp. 658-661
-
-
Hrecka, K.1
Hao, C.2
Gierszewska, M.3
Swanson, S.K.4
Kesik-Brodacka, M.5
Srivastava, S.6
Florens, L.7
Washburn, M.P.8
Skowronski, J.9
-
22
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
D.H. Huson, and D. Bryant Application of phylogenetic networks in evolutionary studies Mol. Biol. Evol. 23 2006 254 267
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
23
-
-
33745059199
-
Chimpanzee reservoirs of pandemic and nonpandemic HIV-1
-
B.F. Keele, F. Van Heuverswyn, Y. Li, E. Bailes, J. Takehisa, M.L. Santiago, F. Bibollet-Ruche, Y. Chen, L.V. Wain, and F. Liegeois Chimpanzee reservoirs of pandemic and nonpandemic HIV-1 Science 313 2006 523 526
-
(2006)
Science
, vol.313
, pp. 523-526
-
-
Keele, B.F.1
Van Heuverswyn, F.2
Li, Y.3
Bailes, E.4
Takehisa, J.5
Santiago, M.L.6
Bibollet-Ruche, F.7
Chen, Y.8
Wain, L.V.9
Liegeois, F.10
-
24
-
-
0026722407
-
Origins of genes: "big bang" or continuous creation?
-
P.K. Keese, and A. Gibbs Origins of genes: "big bang" or continuous creation? Proc. Natl. Acad. Sci. USA 89 1992 9489 9493
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 9489-9493
-
-
Keese, P.K.1
Gibbs, A.2
-
25
-
-
77958182786
-
Immune evasion and counteraction of restriction factors by HIV-1 and other primate lentiviruses
-
F. Kirchhoff Immune evasion and counteraction of restriction factors by HIV-1 and other primate lentiviruses Cell Host Microbe 8 2010 55 67
-
(2010)
Cell Host Microbe
, vol.8
, pp. 55-67
-
-
Kirchhoff, F.1
-
26
-
-
33845361366
-
GARD: A genetic algorithm for recombination detection
-
S.L. Kosakovsky Pond, D. Posada, M.B. Gravenor, C.H. Woelk, and S.D. Frost GARD: a genetic algorithm for recombination detection Bioinformatics 22 2006 3096 3098
-
(2006)
Bioinformatics
, vol.22
, pp. 3096-3098
-
-
Kosakovsky Pond, S.L.1
Posada, D.2
Gravenor, M.B.3
Woelk, C.H.4
Frost, S.D.5
-
27
-
-
79959843617
-
SAMHD1 is the dendritic- and myeloid-cell-specific HIV-1 restriction factor counteracted by Vpx
-
N. Laguette, B. Sobhian, N. Casartelli, M. Ringeard, C. Chable-Bessia, E. Ségéral, A. Yatim, S. Emiliani, O. Schwartz, and M. Benkirane SAMHD1 is the dendritic- and myeloid-cell-specific HIV-1 restriction factor counteracted by Vpx Nature 474 2011 654 657
-
(2011)
Nature
, vol.474
, pp. 654-657
-
-
Laguette, N.1
Sobhian, B.2
Casartelli, N.3
Ringeard, M.4
Chable-Bessia, C.5
Ségéral, E.6
Yatim, A.7
Emiliani, S.8
Schwartz, O.9
Benkirane, M.10
-
28
-
-
84857347109
-
The ability of primate lentiviruses to degrade the monocyte restriction factor SAMHD1 preceded the birth of the viral accessory protein Vpx
-
E.S. Lim, O.I. Fregoso, C.O. McCoy, F.A. Matsen, H.S. Malik, and M. Emerman The ability of primate lentiviruses to degrade the monocyte restriction factor SAMHD1 preceded the birth of the viral accessory protein Vpx Cell Host Microbe 11 2012 194 204
-
(2012)
Cell Host Microbe
, vol.11
, pp. 194-204
-
-
Lim, E.S.1
Fregoso, O.I.2
McCoy, C.O.3
Matsen, F.A.4
Malik, H.S.5
Emerman, M.6
-
30
-
-
0038681023
-
Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts
-
B. Mangeat, P. Turelli, G. Caron, M. Friedli, L. Perrin, and D. Trono Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts Nature 424 2003 99 103
-
(2003)
Nature
, vol.424
, pp. 99-103
-
-
Mangeat, B.1
Turelli, P.2
Caron, G.3
Friedli, M.4
Perrin, L.5
Trono, D.6
-
31
-
-
25144446304
-
Simian immunodeficiency virus infection in free-ranging sooty mangabeys (Cercocebus atys atys) from the Taï Forest, Côte d'Ivoire: Implications for the origin of epidemic human immunodeficiency virus type 2
-
M.L. Santiago, F. Range, B.F. Keele, Y. Li, E. Bailes, F. Bibollet-Ruche, C. Fruteau, R. Noë, M. Peeters, and J.F. Brookfield Simian immunodeficiency virus infection in free-ranging sooty mangabeys (Cercocebus atys atys) from the Taï Forest, Côte d'Ivoire: implications for the origin of epidemic human immunodeficiency virus type 2 J. Virol. 79 2005 12515 12527
-
(2005)
J. Virol.
, vol.79
, pp. 12515-12527
-
-
Santiago, M.L.1
Range, F.2
Keele, B.F.3
Li, Y.4
Bailes, E.5
Bibollet-Ruche, F.6
Fruteau, C.7
Noë, R.8
Peeters, M.9
Brookfield, J.F.10
-
32
-
-
71749105713
-
Tetherin-driven adaptation of Vpu and Nef function and the evolution of pandemic and nonpandemic HIV-1 strains
-
D. Sauter, M. Schindler, A. Specht, W.N. Landford, J. Münch, K.A. Kim, J. Votteler, U. Schubert, F. Bibollet-Ruche, and B.F. Keele Tetherin-driven adaptation of Vpu and Nef function and the evolution of pandemic and nonpandemic HIV-1 strains Cell Host Microbe 6 2009 409 421
-
(2009)
Cell Host Microbe
, vol.6
, pp. 409-421
-
-
Sauter, D.1
Schindler, M.2
Specht, A.3
Landford, W.N.4
Münch, J.5
Kim, K.A.6
Votteler, J.7
Schubert, U.8
Bibollet-Ruche, F.9
Keele, B.F.10
-
33
-
-
19344362934
-
Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G
-
S.L. Sawyer, M. Emerman, and H.S. Malik Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G PLoS Biol. 2 2004 E275
-
(2004)
PLoS Biol.
, vol.2
, pp. 275
-
-
Sawyer, S.L.1
Emerman, M.2
Malik, H.S.3
-
35
-
-
0037043699
-
Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein
-
A.M. Sheehy, N.C. Gaddis, J.D. Choi, and M.H. Malim Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein Nature 418 2002 646 650
-
(2002)
Nature
, vol.418
, pp. 646-650
-
-
Sheehy, A.M.1
Gaddis, N.C.2
Choi, J.D.3
Malim, M.H.4
-
36
-
-
77951460356
-
Identification of dominant negative human immunodeficiency virus type 1 Vif mutants that interfere with the functional inactivation of APOBEC3G by virus-encoded Vif
-
R.C. Walker Jr., M.A. Khan, S. Kao, R. Goila-Gaur, E. Miyagi, and K. Strebel Identification of dominant negative human immunodeficiency virus type 1 Vif mutants that interfere with the functional inactivation of APOBEC3G by virus-encoded Vif J. Virol. 84 2010 5201 5211
-
(2010)
J. Virol.
, vol.84
, pp. 5201-5211
-
-
Walker Jr., R.C.1
Khan, M.A.2
Kao, S.3
Goila-Gaur, R.4
Miyagi, E.5
Strebel, K.6
-
37
-
-
84860537232
-
Co-evolution of primate SAMHD1 and lentivirus Vpx leads to the loss of the vpx gene in HIV-1 ancestor
-
C. Zhang, S. de Silva, J.H. Wang, and L. Wu Co-evolution of primate SAMHD1 and lentivirus Vpx leads to the loss of the vpx gene in HIV-1 ancestor PLoS ONE 7 2012 e37477
-
(2012)
PLoS ONE
, vol.7
, pp. 37477
-
-
Zhang, C.1
De Silva, S.2
Wang, J.H.3
Wu, L.4
|