-
1
-
-
56549108407
-
Epigenetic regulation of centromeric chromatin: Old dogs, new tricks?
-
Allshire RC, Karpen GH. (2008). Epigenetic regulation of centromeric chromatin: old dogs, new tricks? Nat Rev Genet. 9: 923-937
-
(2008)
Nat Rev Genet
, vol.9
, pp. 923-937
-
-
Allshire, R.C.1
Karpen, G.H.2
-
3
-
-
0037626674
-
Aflp phylogeny of mimulus section erythranthe and the evolution of hummingbird pollination
-
Beardsley PM, Yen A, Olmstead RG. (2003). AFLP phylogeny of Mimulus section Erythranthe and the evolution of hummingbird pollination. Evolution 57: 1397-1410
-
(2003)
Evolution
, vol.57
, pp. 1397-1410
-
-
Beardsley, P.M.1
Yen, A.2
Olmstead, R.G.3
-
4
-
-
0035061474
-
Positive and negative selection in the daz gene family
-
Bielawski JP, Yang Z. (2001). Positive and negative selection in the DAZ gene family. Mol Biol Evol. 18: 523-529
-
(2001)
Mol Biol Evol
, vol.18
, pp. 523-529
-
-
Bielawski, J.P.1
Yang, Z.2
-
5
-
-
3042842589
-
A maximum likelihood method for detecting functional divergence at individual codon sites, with application to gene family evolution
-
Bielawski JP, Yang Z. (2004) A maximum likelihood method for detecting functional divergence at individual codon sites, with application to gene family evolution. J Mol Evol. 59: 121-132
-
(2004)
J Mol Evol
, vol.59
, pp. 121-132
-
-
Bielawski, J.P.1
Yang, Z.2
-
6
-
-
0042710694
-
Marcus rhoades, preferential segregation and meiotic drive
-
Birchler JA, Dawe RK, Doebley JF. (2003). Marcus Rhoades, preferential segregation and meiotic drive. Genetics 164: 835-841
-
(2003)
Genetics
, vol.164
, pp. 835-841
-
-
Birchler, J.A.1
Dawe, R.K.2
Doebley, J.F.3
-
7
-
-
84905049901
-
Trimmomatic: A flexible trimmer for illumina sequence data
-
Bolger AM, Lohse M, Usadel B. (2014). Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30: 2114-2120
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
8
-
-
56549105643
-
Emerging roles for centromeres in meiosis i chromosome segregation
-
Brar GA, Amon A. (2008). Emerging roles for centromeres in meiosis I chromosome segregation. Nat Rev Genet. 9: 899-910
-
(2008)
Nat Rev Genet
, vol.9
, pp. 899-910
-
-
Brar, G.A.1
Amon, A.2
-
10
-
-
84908221060
-
Centromere strength provides the cell biological basis for meiotic drive and karyotype evolution in mice
-
Chmátal L, Gabriel SI, Mitsainas GP, Martínez-Vargas J, Ventura J, Searle JB, Schultz RM, Lampson MA. (2014). Centromere strength provides the cell biological basis for meiotic drive and karyotype evolution in mice. Curr Biol. 24: 2295-2300
-
(2014)
Curr Biol
, vol.24
, pp. 2295-2300
-
-
Chmátal, L.1
Gabriel, S.I.2
Mitsainas, G.P.3
Martínez-Vargas, J.4
Ventura, J.5
Searle, J.B.6
Schultz, R.M.7
Lampson, M.A.8
-
12
-
-
84919667500
-
Gene expression plasticity resulting from parental leaf damage in mimulus guttatus
-
Colicchio JM, Monnahan PJ, Kelly JK, Hileman LC. (2015). Gene expression plasticity resulting from parental leaf damage in Mimulus guttatus. New Phytol. 205: 894-906
-
(2015)
New Phytol
, vol.205
, pp. 894-906
-
-
Colicchio, J.M.1
Monnahan, P.J.2
Kelly, J.K.3
Hileman, L.C.4
-
13
-
-
4143071290
-
Adaptive evolution of the histone fold domain in centromeric histones
-
Cooper JL, Henikoff S. (2004). Adaptive evolution of the histone fold domain in centromeric histones. Mol Biol Evol. 21: 1712-1718
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1712-1718
-
-
Cooper, J.L.1
Henikoff, S.2
-
14
-
-
84864453108
-
Jmodeltest 2: More models, new heuristics and parallel computing
-
Darriba D, Taboada GL, Doallo R, Posada D. (2012). jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 9: 772
-
(2012)
Nat Methods
, vol.9
, pp. 772
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
15
-
-
84928674884
-
Recurrent loss of cenh3 is associated with independent transitions to holocentricity in insects
-
Drinnenberg IA, deYoung D, Henikoff S, Malik HS. (2014). Recurrent loss of CenH3 is associated with independent transitions to holocentricity in insects. Elife 3: e03676
-
(2014)
Elife
, vol.3
, pp. e03676
-
-
Drinnenberg, I.A.1
De Young, D.2
Henikoff, S.3
Malik, H.S.4
-
16
-
-
79961034790
-
Absence of positive selection on centromeric histones in tetrahymena suggests unsuppressed centromere-drive in lineages lacking male meiosis
-
Elde NC, Roach KC, Yao M-C, Malik HS. (2011). Absence of positive selection on centromeric histones in Tetrahymena suggests unsuppressed centromere-drive in lineages lacking male meiosis. J Mol Evol. 72: 510-520
-
(2011)
J Mol Evol
, vol.72
, pp. 510-520
-
-
Elde, N.C.1
Roach, K.C.2
Yao, M.-C.3
Malik, H.S.4
-
17
-
-
84929506980
-
Centromere-Associated meiotic drive and female fitness variation in mimulus
-
Fishman L, Kelly JK. (2015). Centromere-Associated meiotic drive and female fitness variation in Mimulus. Evolution 69: 1208-1218
-
(2015)
Evolution
, vol.69
, pp. 1208-1218
-
-
Fishman, L.1
Kelly, J.K.2
-
18
-
-
57349107993
-
Centromere-Associated female meiotic drive entails male fitness costs in monkeyflowers
-
Fishman L, Saunders A. (2008). Centromere-Associated female meiotic drive entails male fitness costs in monkeyflowers. Science. 322: 1559-1562
-
(2008)
Science
, vol.322
, pp. 1559-1562
-
-
Fishman, L.1
Saunders, A.2
-
19
-
-
13744257635
-
A novel meiotic drive locus almost completely distorts segregation in mimulus (monkeyflower) hybrids
-
Fishman L, Willis JH. (2005) A novel meiotic drive locus almost completely distorts segregation in Mimulus (monkeyflower) hybrids. Genetics 169: 347-353
-
(2005)
Genetics
, vol.169
, pp. 347-353
-
-
Fishman, L.1
Willis, J.H.2
-
20
-
-
84899423962
-
Comparative linkage maps suggest that fission, not polyploidy, underlies near-doubling of chromosome number within monkeyflowers (mimulus; Phrymaceae
-
Fishman L, Willis JH, Wu CA, Lee YW. (2014). Comparative linkage maps suggest that fission, not polyploidy, underlies near-doubling of chromosome number within monkeyflowers (Mimulus; Phrymaceae). Heredity 112: 565-568
-
(2014)
Heredity
, vol.112
, pp. 565-568
-
-
Fishman, L.1
Willis, J.H.2
Wu, C.A.3
Lee, Y.W.4
-
21
-
-
84892544658
-
The standing pool of genomic structural variation in a natural population of mimulus guttatus
-
Flagel LE, Willis JH, Vision TJ. (2014). The standing pool of genomic structural variation in a natural population of Mimulus guttatus. Genome Biol Evol. 6: 53-64
-
(2014)
Genome Biol Evol
, vol.6
, pp. 53-64
-
-
Flagel, L.E.1
Willis, J.H.2
Vision, T.J.3
-
22
-
-
0027453041
-
Statistical tests of neutrality of mutations
-
Fu Y-X, Li WH. (1993). Statistical tests of neutrality of mutations. Genetics. 133: 693-709
-
(1993)
Genetics
, vol.133
, pp. 693-709
-
-
Fu, Y.-X.1
Li, W.H.2
-
23
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O. (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52: 696-704
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
24
-
-
66049128566
-
Distinguishing among evolutionary models for the maintenance of gene duplicates
-
Hahn MW. (2009). Distinguishing among evolutionary models for the maintenance of gene duplicates. J Hered. 100: 605-617
-
(2009)
J Hered
, vol.100
, pp. 605-617
-
-
Hahn, M.W.1
-
25
-
-
0022376704
-
Dating of the human-Ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa M, Kishino H, Yano T. (1985). Dating of the human-Ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 22: 160-174
-
(1985)
J Mol Evol
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
26
-
-
84888352726
-
Fine-scale variation in meiotic recombination in mimulus inferred from population shotgun sequencing
-
Hellsten U, Wright KM, Jenkins J, Shu S, Yuan Y, Wessler SR, Schmutz J, Willis JH, Rokhsar DS. (2013). Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing. Proc Natl Acad Sci U S A. 110: 19478-19482
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 19478-19482
-
-
Hellsten, U.1
Wright, K.M.2
Jenkins, J.3
Shu, S.4
Yuan, Y.5
Wessler, S.R.6
Schmutz, J.7
Willis, J.H.8
Rokhsar, D.S.9
-
27
-
-
0035839066
-
The centromere paradox: Stable inheritance with rapidly evolving DNA
-
Henikoff S, Ahmad K, Malik HS. (2001). The centromere paradox: stable inheritance with rapidly evolving DNA. Science 293: 1098-1102
-
(2001)
Science
, vol.293
, pp. 1098-1102
-
-
Henikoff, S.1
Ahmad, K.2
Malik, H.S.3
-
28
-
-
0037118065
-
Centromeres: Selfish drivers
-
Henikoff S, Malik HS. (2002). Centromeres: selfish drivers. Nature 417: 227-227
-
(2002)
Nature
, vol.417
, pp. 227-227
-
-
Henikoff, S.1
Malik, H.S.2
-
29
-
-
33644542460
-
Mislocalization of the drosophila centromere-specific histone cid promotes formation of functional ectopic kinetochores
-
Heun P, Erhardt S, Blower MD, Weiss S, Skora AD, Karpen GH. (2006). Mislocalization of the Drosophila centromere-specific histone CID promotes formation of functional ectopic kinetochores. Dev Cell. 10: 303-315
-
(2006)
Dev Cell
, vol.10
, pp. 303-315
-
-
Heun, P.1
Erhardt, S.2
Blower, M.D.3
Weiss, S.4
Skora, A.D.5
Karpen, G.H.6
-
30
-
-
70450265539
-
Lineage-specific adaptive evolution of the centromeric protein cenh3 in diploid and allotetraploid oryza species
-
Hirsch CD, Wu Y, Yan H, Jiang J. (2009). Lineage-specific adaptive evolution of the centromeric protein CENH3 in diploid and allotetraploid Oryza species. Mol Biol Evol. 26: 2877-2885
-
(2009)
Mol Biol Evol
, vol.26
, pp. 2877-2885
-
-
Hirsch, C.D.1
Wu, Y.2
Yan, H.3
Jiang, J.4
-
31
-
-
0023339852
-
A test of neutral molecular evolution based on nucleotide data
-
Aguade
-
Hudson RR, Kreitman M, Aguade. (1987) A test of neutral molecular evolution based on nucleotide data. Genetics 116
-
(1987)
Genetics
, pp. 116
-
-
Hudson, R.R.1
Kreitman, M.2
-
32
-
-
0033973359
-
Early disruption of centromeric chromatin organization in centromere protein a (cenpa) null mice
-
Howman EV, Fowler KJ, Newson AJ, Redward S, MacDonald AC, Kalitsis P, Choo KA. (2000). Early disruption of centromeric chromatin organization in centromere protein A (CenPA) null mice. Proc Natl Acad Sci U S A. 97: 1148-1153
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 1148-1153
-
-
Howman, E.V.1
Fowler, K.J.2
Newson, A.J.3
Redward, S.4
MacDonald, A.C.5
Kalitsis, P.6
Choo, K.A.7
-
33
-
-
0028342845
-
The evolution of functionally novel proteins after gene duplication
-
Hughes AL. (1994). The evolution of functionally novel proteins after gene duplication. Proc R Soc Lond B Biol Sci. 256: 119-124
-
(1994)
Proc R Soc Lond B Biol Sci
, vol.256
, pp. 119-124
-
-
Hughes, A.L.1
-
34
-
-
75549087305
-
The evolution of gene duplications: Classifying and distinguishing between models
-
Innan H, Kondrashov F. (2010). The evolution of gene duplications: classifying and distinguishing between models. Nat Rev Genet. 11: 97-108
-
(2010)
Nat Rev Genet
, vol.11
, pp. 97-108
-
-
Innan, H.1
Kondrashov, F.2
-
35
-
-
15044362584
-
Structure and genomic organization of centromeric repeats in arabidopsis species
-
Kawabe A, Nasuda S. (2004). Structure and genomic organization of centromeric repeats in Arabidopsis species. Mol Genet Genomics. 272: 593-602
-
(2004)
Mol Genet Genomics
, vol.272
, pp. 593-602
-
-
Kawabe, A.1
Nasuda, S.2
-
36
-
-
33845781987
-
Duplication of centromeric histone h3 (htr12) gene in arabidopsis halleri and a lyrata, plant species with multiple centromeric satellite sequences
-
Kawabe A, Nasuda S, Charlesworth D. (2006). Duplication of centromeric histone H3 (HTR12) gene in Arabidopsis halleri and A. lyrata, plant species with multiple centromeric satellite sequences. Genetics. 174: 2021-2032
-
(2006)
Genetics
, vol.174
, pp. 2021-2032
-
-
Kawabe, A.1
Nasuda, S.2
Charlesworth, D.3
-
37
-
-
36448991500
-
Clustal w and clustal x version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
-
38
-
-
23844434604
-
Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in oryza species
-
Lee H-R, Zhang W, Langdon T, Jin W, Yan H, Cheng Z, Jiang J. (2005). Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species. Proc Natl Acad Sci U S A. 102: 11793-11798
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 11793-11798
-
-
Lee, H.-R.1
Zhang, W.2
Langdon, T.3
Jin, W.4
Yan, H.5
Cheng, Z.6
Jiang, J.7
-
39
-
-
80053564298
-
Knockdown of cenh3 in arabidopsis reduces mitotic divisions and causes sterility by disturbed meiotic chromosome segregation
-
Lermontova I, Koroleva O, Rutten T, Fuchs J, Schubert V, Moraes I, Koszegi D, Schubert I. (2011). Knockdown of CENH3 in Arabidopsis reduces mitotic divisions and causes sterility by disturbed meiotic chromosome segregation. Plant J. 68: 40-50
-
(2011)
Plant J
, vol.68
, pp. 40-50
-
-
Lermontova, I.1
Koroleva, O.2
Rutten, T.3
Fuchs, J.4
Schubert, V.5
Moraes, I.6
Koszegi, D.7
Schubert, I.8
-
40
-
-
33750970858
-
Loading of arabidopsis centromeric histone cenh3 occurs mainly during g2 and requires the presence of the histone fold domain
-
Lermontova I, Schubert V, Fuchs J, Klatte S, Macas J, Schubert I. (2006). Loading of Arabidopsis centromeric histone CENH3 occurs mainly during G2 and requires the presence of the histone fold domain. Plant Cell 18: 2443-2451
-
(2006)
Plant Cell
, vol.18
, pp. 2443-2451
-
-
Lermontova, I.1
Schubert, V.2
Fuchs, J.3
Klatte, S.4
Macas, J.5
Schubert, I.6
-
41
-
-
67649884743
-
Fast and accurate short read alignment with burrows-wheeler transform
-
Li H, Durbin R. (2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
42
-
-
65649117685
-
Dnasp v5: A software for comprehensive analysis of DNA polymorphism data
-
Librado P, Rozas J. (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
43
-
-
84924365661
-
Naturally occurring differences in cenh3 affect chromosome segregation in zygoticmitosis in hybrids
-
Maheshwari A, Tan EH, West A, Franklin FCF, Comain L, Chan SWL. 2015. Naturally occurring differences in CENH3 affect chromosome segregation in zygoticmitosis in hybrids. PLoS Genet. 11(1): e1004970
-
(2015)
PLoS Genet
, vol.11
, Issue.1
, pp. e1004970
-
-
Maheshwari, A.1
Tan, E.H.2
West, A.3
Franklin, F.C.F.4
Comain, L.5
Swl, C.6
-
44
-
-
33747186395
-
Genetic conflicts during meiosis and the evolutionary origins of centromere complexity
-
Malik HS, Bayes JJ. (2006). Genetic conflicts during meiosis and the evolutionary origins of centromere complexity. Biochem Soc Trans. 34: 569-573
-
(2006)
Biochem Soc Trans
, vol.34
, pp. 569-573
-
-
Malik, H.S.1
Bayes, J.J.2
-
45
-
-
0035103847
-
Adaptive evolution of cid, a centromerespecific histone in drosophila
-
Malik HS, Henikoff S. (2001). Adaptive evolution of Cid, a centromerespecific histone in Drosophila. Genetics 157: 1293-1298
-
(2001)
Genetics
, vol.157
, pp. 1293-1298
-
-
Malik, H.S.1
Henikoff, S.2
-
46
-
-
0036889219
-
Conflict begets complexity: The evolution of centromeres
-
Malik HS, Henikoff S. (2002). Conflict begets complexity: the evolution of centromeres. Curr Opin Genet Dev. 12: 711-718
-
(2002)
Curr Opin Genet Dev
, vol.12
, pp. 711-718
-
-
Malik, H.S.1
Henikoff, S.2
-
47
-
-
70149095590
-
Major evolutionary transitions in centromere complexity
-
Malik HS, Henikoff S. (2009). Major evolutionary transitions in centromere complexity. Cell 138: 1067-1082
-
(2009)
Cell
, vol.138
, pp. 1067-1082
-
-
Malik, H.S.1
Henikoff, S.2
-
48
-
-
0037022285
-
Recurrent evolution of dnabinding motifs in the drosophila centromeric histone
-
Malik HS, Vermaak D, Henikoff S. (2002). Recurrent evolution of DNAbinding motifs in the Drosophila centromeric histone. Proc Natl Acad Sci U S A. 99: 1449-1454
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 1449-1454
-
-
Malik, H.S.1
Vermaak, D.2
Henikoff, S.3
-
49
-
-
84873032132
-
Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution
-
Melters DP, Bradnam KR, Young HA, Telis N, May MR, Ruby JG, Sebra R, Peluso P, Eid J, Rank D, et al. (2013). Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution. Genome Biol. 14: R10
-
(2013)
Genome Biol
, vol.14
, pp. R10
-
-
Melters, D.P.1
Bradnam, K.R.2
Young, H.A.3
Telis, N.4
May, M.R.5
Ruby, J.G.6
Sebra, R.7
Peluso, P.8
Eid, J.9
Rank, D.10
-
50
-
-
28544437464
-
Differential role of CENP-A in the segregation of holocentric C Elegans chromosomes during meiosis and mitosis
-
Monen J, Maddox PS, Hyndman F, Oegema K, Desai A. (2005). Differential role of CENP-A in the segregation of holocentric C. elegans chromosomes during meiosis and mitosis. Nat Cell Biol. 7: 1248-1255
-
(2005)
Nat Cell Biol
, vol.7
, pp. 1248-1255
-
-
Monen, J.1
Maddox, P.S.2
Hyndman, F.3
Oegema, K.4
Desai, A.5
-
51
-
-
0035844881
-
Hcp-4, a cenp-c-like protein in caenorhabditis elegans, is required for resolution of sister centromeres
-
Moore LL, Roth MB. (2001). HCP-4, a CENP-C-like protein in Caenorhabditis elegans, is required for resolution of sister centromeres. J Cell Biol. 153: 1199-1208
-
(2001)
J Cell Biol
, vol.153
, pp. 1199-1208
-
-
Moore, L.L.1
Roth, M.B.2
-
52
-
-
79151471903
-
Recognition of a thaliana centromeres by heterologous CENH3 requires high similarity to the endogenous protein
-
Moraes ICR, Lermontova I, Schubert I. (2010). Recognition of A. thaliana centromeres by heterologous CENH3 requires high similarity to the endogenous protein. Plant Mol Biol. 75: 253-261
-
(2010)
Plant Mol Biol
, vol.75
, pp. 253-261
-
-
Moraes, I.C.R.1
Lermontova, I.2
Schubert, I.3
-
53
-
-
22244451706
-
Stable barley chromosomes without centromeric repeats
-
Nasuda S, Hudakova S, Schubert I, Houben A, Endo TR. (2005). Stable barley chromosomes without centromeric repeats. Proc Natl Acad Sci U S A. 102: 9842-9847
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 9842-9847
-
-
Nasuda, S.1
Hudakova, S.2
Schubert, I.3
Houben, A.4
Endo, T.R.5
-
54
-
-
84864053237
-
Stretching the rules: Monocentric chromosomes withmultiple centromere domains
-
Neumann P, Navrátilová A, Schroeder-Reiter E, Koblížková A, Steinbauerová V, Chocholová E, Novák P, Wanner G, Macas J. 2012. Stretching the rules: monocentric chromosomes withmultiple centromere domains. PLoS Genet. 8: e1002777
-
(2012)
PLoS Genet
, vol.8
, pp. e1002777
-
-
Neumann, P.1
Navrátilová, A.2
Schroeder-Reiter, E.3
Koblížková, A.4
Steinbauerová, V.5
Chocholová, E.6
Novák, P.7
Wanner, G.8
Macas, J.9
-
55
-
-
84936873683
-
Centromeres off the hook: Massive changes in centromere size and structure following duplication of cenh3 gene in fabeae species
-
Neumann P, Pavlíková Z, Koblížková A, Fuková I, Jedličková V, Novák P, Macas J. (2015). Centromeres off the hook: massive changes in centromere size and structure following duplication of CenH3 gene in Fabeae species. Mol Biol Evol. 1862-1879
-
(2015)
Mol Biol Evol
, pp. 1862-1879
-
-
Neumann, P.1
Pavlíková, Z.2
Koblížková, A.3
Fuková, I.4
Jedličková, V.5
Novák, P.6
Macas, J.7
-
56
-
-
0031972161
-
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
-
Nielsen R, Yang Z. (1998). Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148: 929-936
-
(1998)
Genetics
, vol.148
, pp. 929-936
-
-
Nielsen, R.1
Yang, Z.2
-
57
-
-
0035844871
-
Functional analysis of kinetochore assembly in caenorhabditis elegans
-
Oegema K, Desai A, Rybina S, Kirkham M, Hyman AA. (2001). Functional analysis of kinetochore assembly in Caenorhabditis elegans. J Cell Biol. 153: 1209-1226
-
(2001)
J Cell Biol
, vol.153
, pp. 1209-1226
-
-
Oegema, K.1
Desai, A.2
Rybina, S.3
Kirkham, M.4
Hyman, A.A.5
-
59
-
-
0035021901
-
Nonrandom segregation during meiosis: The unfairness of females
-
Pardo-Manuel de Villena F, Sapienza C. (2001). Nonrandom segregation during meiosis: the unfairness of females. Mamm Genome. 12: 331-339
-
(2001)
Mamm Genome
, vol.12
, pp. 331-339
-
-
Pardo-Manuel De Villena, F.1
Sapienza, C.2
-
60
-
-
0035675040
-
Female meiosis drives karyotypic evolution in mammals
-
Pardo-Manuel de Villena F, Sapienza C. (2001). Female meiosis drives karyotypic evolution in mammals. Genetics 159: 1179-1189
-
(2001)
Genetics
, vol.159
, pp. 1179-1189
-
-
Pardo-Manuel De Villena, F.1
Sapienza, C.2
-
61
-
-
84863304598
-
-
R Core Team. Vienna (Austria): R Foundation for Statistical Computing. Available from
-
R Core Team. (2014). R: a language and environment for statistical computing. Vienna (Austria): R Foundation for Statistical Computing. Available from: http://www.R-project.org/
-
(2014)
R A Language and Environment for Statistical Computing
-
-
-
62
-
-
84888632073
-
Nothing in genetics makes sense except in light of genomic conflict
-
Rice WR. (2013). Nothing in genetics makes sense except in light of genomic conflict. Annu Rev Ecol Evol Syst. 44: 217-237
-
(2013)
Annu Rev Ecol Evol Syst
, vol.44
, pp. 217-237
-
-
Rice, W.R.1
-
63
-
-
84860109324
-
Mrbayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space
-
Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Hohna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. (2012). MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61: 539-542
-
(2012)
Syst Biol
, vol.61
, pp. 539-542
-
-
Ronquist, F.1
Teslenko, M.2
Van Der Mark, P.3
Ayres, D.L.4
Darling, A.5
Hohna, S.6
Larget, B.7
Liu, L.8
Suchard, M.A.9
Huelsenbeck, J.P.10
-
64
-
-
0036135442
-
Molecular evolution of the nontandemly repeated genes of the histone 3 multigene family
-
Rooney AP, Piontkivska H, Nei M. (2002). Molecular evolution of the nontandemly repeated genes of the histone 3 multigene family. Mol Biol Evol. 19: 68-75
-
(2002)
Mol Biol Evol
, vol.19
, pp. 68-75
-
-
Rooney, A.P.1
Piontkivska, H.2
Nei, M.3
-
65
-
-
80051989246
-
Loss of centromeric histone h3 (cenh3) from centromeres precedes uniparental chromosome elimination in interspecific barley hybrids
-
Sanei M, Pickering R, Kumke K, Nasuda S, Houben A. (2011). Loss of centromeric histone H3 (CENH3) from centromeres precedes uniparental chromosome elimination in interspecific barley hybrids. Proc Natl Acad Sci U S A. 108: E498-E505
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. E498-E505
-
-
Sanei, M.1
Pickering, R.2
Kumke, K.3
Nasuda, S.4
Houben, A.5
-
66
-
-
77953795615
-
Adaptive evolution of foundation kinetochore proteins in primates
-
Comparative Sequencing Program NISC, Green ED
-
Schueler MG, Swanson W, Thomas PJ, Comparative Sequencing Program NISC, Green ED. (2010). Adaptive evolution of foundation kinetochore proteins in primates.Mol Biol Evol. 27: 1585-1597
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1585-1597
-
-
Schueler, M.G.1
Swanson, W.2
Thomas, P.J.3
-
67
-
-
0037230001
-
Pervasive adaptive evolution in mammalian fertilization proteins 2018-20
-
Swanson WJ, Nielsen R, Yang Q. (2003). Pervasive adaptive evolution in mammalian fertilization proteins. 20: 18-20. Mol Bol Evol. 20: 18-20
-
(2003)
Mol Bol Evol
, vol.20
, pp. 18-20
-
-
Swanson, W.J.1
Nielsen, R.2
Yang, Q.3
-
68
-
-
80051685994
-
Crystal structure of the human centromeric nucleosome containing CENP-A
-
Tachiwana H, Kagaw W, Shiga T, Osakabe A, Miya Y, Saito K, Hayashi-Takanaka Y, Oda T, Sato M, Park S-Y, et al. (2011). Crystal structure of the human centromeric nucleosome containing CENP-A. Nature. 476: 232-235
-
(2011)
Nature
, vol.476
, pp. 232-235
-
-
Tachiwana, H.1
Kagaw, W.2
Shiga, T.3
Osakabe, A.4
Miya, Y.5
Saito, K.6
Hayashi-Takanaka, Y.7
Oda, T.8
Sato, M.9
Park, S.-Y.10
-
69
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
70
-
-
84900252958
-
-
DeWulf P, Earnshaw WC, editors. The kinetochore. Berlin Springer
-
Talbert PB, Bayes JJ, Henikoff S. (2009). Evolution of centromeres and kinetochores: a two-part fugue. In: DeWulf P, Earnshaw WC, editors. The kinetochore. Berlin: Springer. p. 193-229
-
(2009)
Evolution of Centromeres and Kinetochores: A Two-part Fugue
, pp. 193-229
-
-
Talbert, P.B.1
Bayes, J.J.2
Henikoff, S.3
-
71
-
-
27744470402
-
Adaptive evolution of centromere proteins in plants and animals
-
Talbert PB, Bryson TD, Henikoff S. (2004). Adaptive evolution of centromere proteins in plants and animals. J Biol. 3: 1-17
-
(2004)
J Biol
, vol.3
, pp. 1-17
-
-
Talbert, P.B.1
Bryson, T.D.2
Henikoff, S.3
-
72
-
-
0036016437
-
Centromeric localization and adaptive evolution of an arabidopsis histone h3variant
-
Talbert PB, Masuelli R, Tyagi AP, Comai L, Henikoff S. (2002). Centromeric localization and adaptive evolution of an Arabidopsis histone H3variant. Plant Cell 14: 1053-1066
-
(2002)
Plant Cell
, vol.14
, pp. 1053-1066
-
-
Talbert, P.B.1
Masuelli, R.2
Tyagi, A.P.3
Comai, L.4
Henikoff, S.5
-
73
-
-
79957613599
-
Mega5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28: 2731-2739
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
74
-
-
0027968068
-
Clustal w: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
75
-
-
0038079839
-
Overexpression and mistargeting of centromere protein-A in human primary colorectal cancer
-
Tomonaga T, Matsushita K, Yamaguchi S, Oohashi T, Shimada H, Ochiai T, Yoda K, Nomura F. (2003). Overexpression and mistargeting of centromere protein-A in human primary colorectal cancer. Cancer Res. 63: 3511-3516
-
(2003)
Cancer Res
, vol.63
, pp. 3511-3516
-
-
Tomonaga, T.1
Matsushita, K.2
Yamaguchi, S.3
Oohashi, T.4
Shimada, H.5
Ochiai, T.6
Yoda, K.7
Nomura, F.8
-
76
-
-
0036837686
-
Centromere targeting element within the histone fold domain of cid
-
Vermaak D, Hayden HS, Henikoff S. (2002). Centromere targeting element within the histone fold domain of Cid. Mol Cell Biol. 22: 7553-7561
-
(2002)
Mol Cell Biol
, vol.22
, pp. 7553-7561
-
-
Vermaak, D.1
Hayden, H.S.2
Henikoff, S.3
-
77
-
-
84901429347
-
Three potato centromeres are associated with distinct haplotypes with or without megabase-sized satellite repeat arrays
-
Wang L, Zeng Z, Zhang W, Jiang J. (2014). Three potato centromeres are associated with distinct haplotypes with or without megabase-sized satellite repeat arrays. Genetics 196: 397-401
-
(2014)
Genetics
, vol.196
, pp. 397-401
-
-
Wang, L.1
Zeng, Z.2
Zhang, W.3
Jiang, J.4
-
78
-
-
84862892391
-
An improved likelihood ratio test for detecting site-specific functional divergence among clades of protein-coding genes
-
Weadick CJ, Chang BSW. (2012). An improved likelihood ratio test for detecting site-specific functional divergence among clades of protein-coding genes. Mol Biol Evol. 29: 1297-1300
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1297-1300
-
-
Weadick, C.J.1
Bsw, C.2
-
79
-
-
35948943082
-
Aneuploidy: Instigator and inhibitor of tumorigenesis
-
Weaver BAA, Cleveland DW. (2007). Aneuploidy: instigator and inhibitor of tumorigenesis. Cancer Res. 67: 10103-10105
-
(2007)
Cancer Res
, vol.67
, pp. 10103-10105
-
-
Weaver, B.A.A.1
Cleveland, D.W.2
-
80
-
-
8544225780
-
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites
-
Wong WSW, Yang Z, Goldman N, Nielsen R. (2004). Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. Genetics 168: 1041-1051
-
(2004)
Genetics
, vol.168
, pp. 1041-1051
-
-
Wong, W.S.W.1
Yang, Z.2
Goldman, N.3
Nielsen, R.4
-
81
-
-
0031897964
-
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
-
Yang Z. (1998). Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol Biol Evol. 15: 568-573
-
(1998)
Mol Biol Evol
, vol.15
, pp. 568-573
-
-
Yang, Z.1
-
82
-
-
34547803197
-
Paml 4: Phylogenetic analysis by maximum likelihood
-
Yang Z. (2007). PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24: 1586-1591
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
83
-
-
0036270185
-
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
-
Yang Z, Nielsen R. (2002). Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol Biol Evol. 19: 908-917
-
(2002)
Mol Biol Evol
, vol.19
, pp. 908-917
-
-
Yang, Z.1
Nielsen, R.2
-
84
-
-
0034097381
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites
-
Yang Z, Nielsen R, Goldman N, Pedersen AM. (2000). Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155: 431-449
-
(2000)
Genetics
, vol.155
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.M.4
-
85
-
-
0036134765
-
Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes
-
Yang Z, Swanson WJ. (2002). Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes. Mol Biol Evol. 19: 49-57
-
(2002)
Mol Biol Evol
, vol.19
, pp. 49-57
-
-
Yang, Z.1
Swanson, W.J.2
-
86
-
-
16344378246
-
Bayes empirical bayes inference of amino acid sites under positive selection
-
Yang Z, Wong WSW, Nielsen R. (2005). Bayes empirical Bayes inference of amino acid sites under positive selection. Mol Biol Evol. 22: 1107-1118
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1107-1118
-
-
Yang, Z.1
Wong, W.S.W.2
Nielsen, R.3
-
87
-
-
79955403926
-
Change of positive selection pressure on HIV-1 envelope gene inferred by early and recent samples
-
Yoshida I, Sugiura W, Shibata J, Ren F, Yang Z, Tanaka H. (2011). Change of positive selection pressure on HIV-1 envelope gene inferred by early and recent samples. PLoS One 6: e18630
-
(2011)
PLoS One
, vol.6
, pp. e18630
-
-
Yoshida, I.1
Sugiura, W.2
Shibata, J.3
Ren, F.4
Yang, Z.5
Tanaka, H.6
-
88
-
-
84925114301
-
Characterization of the cenh3genes and their roles in wheat evolution
-
Yuan J, Guo X, Hu J, Lv A, Han F. (2014). Characterization of the CENH3genes and their roles in wheat evolution. New Phytol. 206: 839-851
-
(2014)
New Phytol
, vol.206
, pp. 839-851
-
-
Yuan, J.1
Guo, X.2
Hu, J.3
Lv, A.4
Han, F.5
-
89
-
-
84856091227
-
Evidence for centromere drive in the holocentric chromosomes of caenorhabditis
-
Zedek F, Bures P. (2012). Evidence for centromere drive in the holocentric chromosomes of Caenorhabditis. PLoS One 7: e30496
-
(2012)
PLoS One
, vol.7
, pp. e30496
-
-
Zedek, F.1
Bures, P.2
-
90
-
-
27844439855
-
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
-
Zhang J, Nielsen R, Yang Z. (2005). Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol. 22: 2472-2479
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2472-2479
-
-
Zhang, J.1
Nielsen, R.2
Yang, Z.3
-
91
-
-
0036847093
-
Centromeric retroelements and satellites interact with maize kinetochore protein cenh3
-
Zhong CX, Marshall JB, Topp C, Mroczek R, Kato A, Nagaki K, Birchler JA, Jiang J, Dawe RK. (2002). Centromeric retroelements and satellites interact with maize kinetochore protein CENH3. Plant Cell 14: 2825-2836
-
(2002)
Plant Cell
, vol.14
, pp. 2825-2836
-
-
Zhong, C.X.1
Marshall, J.B.2
Topp, C.3
Mroczek, R.4
Kato, A.5
Nagaki, K.6
Birchler, J.A.7
Jiang, J.8
Dawe, R.K.9
-
92
-
-
84885968059
-
The masurca genome assembler
-
Zimin AV, Marcais G, Puiu D, Roberts M, Salzberg SL, Yorke JA. 2013. The MaSuRCA genome assembler. Bioinformatics 29: 2669-2677
-
(2013)
Bioinformatics
, vol.29
, pp. 2669-2677
-
-
Zimin, A.V.1
Marcais, G.2
Puiu, D.3
Roberts, M.4
Salzberg, S.L.5
Yorke, J.A.6
|