-
1
-
-
84975795680
-
An integrated map of genetic variation from 1,092 human genomes
-
1000 Genomes Project Consortium
-
1000 Genomes Project Consortium. 2012. An integrated map of genetic variation from 1,092 human genomes. Nature 491, 56-65.
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
-
2
-
-
23044509495
-
Pesticide resistance via transposition-mediated adaptive gene truncation in Drosophila
-
Aminetzach YT, Macpherson JM, Petrov DA. 2005. Pesticide resistance via transposition-mediated adaptive gene truncation in Drosophila. Science 309:764-767.
-
(2005)
Science
, vol.309
, pp. 764-767
-
-
Aminetzach, Y.T.1
Macpherson, J.M.2
Petrov, D.A.3
-
3
-
-
0141678039
-
Genome-level evolution of resistance genes in Arabidopsis thaliana
-
Baumgarten A, Cannon S, Spangler R, May G. 2003. Genome-level evolution of resistance genes in Arabidopsis thaliana. Genetics 165: 309-319.
-
(2003)
Genetics
, vol.165
, pp. 309-319
-
-
Baumgarten, A.1
Cannon, S.2
Spangler, R.3
May, G.4
-
4
-
-
34548676152
-
Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants
-
Bomblies K, et al. 2007. Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants. PLoS Biol. 5:e236.
-
(2007)
PLoS Biol.
, vol.5
-
-
Bomblies, K.1
-
5
-
-
0037348718
-
Large-scale identification of single-feature polymorphisms in complex genomes
-
Borevitz JO, et al. 2003. Large-scale identification of single-feature polymorphisms in complex genomes. Genome Res. 13:513-523.
-
(2003)
Genome Res.
, vol.13
, pp. 513-523
-
-
Borevitz, J.O.1
-
6
-
-
0037108783
-
Divergence between samples of chimpanzee and human DNA sequences is 5%, counting indels
-
Britten RJ. 2002. Divergence between samples of chimpanzee and human DNA sequences is 5%, counting indels. Proc Natl Acad Sci U S A. 99: 13633-13635.
-
(2002)
Proc Natl Acad Sci U S A.
, vol.99
, pp. 13633-13635
-
-
Britten, R.J.1
-
7
-
-
80053384429
-
Whole-genome sequencing of multiple Arabidopsis thaliana populations
-
Cao J, et al. 2011. Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nat Genet. 43:956-963.
-
(2011)
Nat Genet.
, vol.43
, pp. 956-963
-
-
Cao, J.1
-
8
-
-
69549116107
-
Break dancer: An algoithm for high-resolution mapping of genomic structural variation
-
Chen K, et al. 2009. BreakDancer: an algoithm for high-resolution mapping of genomic structural variation. Nat Methods. 6:677-681.
-
(2009)
Nat Methods.
, vol.6
, pp. 677-681
-
-
Chen, K.1
-
9
-
-
84863007735
-
Maize HapMap2 identifies extant variation from a genome in flux
-
Chia J-M, et al. 2012. Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet. 44:803-807.
-
(2012)
Nat Genet.
, vol.44
, pp. 803-807
-
-
Chia, J.-M.1
-
10
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
Chimpanzee Sequencing and Analysis Consortium
-
Chimpanzee Sequencing and Analysis Consortium. 2005. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437:69-87.
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
-
11
-
-
77950461601
-
Origins and functional impact of copy number variation in the human genome
-
Conrad DF, et al. 2010. Origins and functional impact of copy number variation in the human genome. Nature 464:704-712.
-
(2010)
Nature
, vol.464
, pp. 704-712
-
-
Conrad, D.F.1
-
12
-
-
77955275027
-
Validation of rearrangement break points identified by paired-end sequencing in natural populations of Drosophila melanogaster
-
Cridland JM, Thornton KR. 2010. Validation of rearrangement break points identified by paired-end sequencing in natural populations of Drosophila melanogaster. Genome Biol Evol. 2:83-101.
-
(2010)
Genome Biol Evol.
, vol.2
, pp. 83-101
-
-
Cridland, J.M.1
Thornton, K.R.2
-
13
-
-
84859499806
-
EggLib: Processing, analysis and simulation tools for population genomics
-
De Mita S, Siol M. 2012. EggLib: processing, analysis and simulation tools for population genomics. BMC Genet. 13:27.
-
(2012)
BMC Genet.
, vol.13
, pp. 27
-
-
De Mita, S.1
Siol, M.2
-
14
-
-
46249105777
-
Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster
-
Emerson JJ, Cardoso-Moreira M, Borevitz JO, Long M. 2008. Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster. Science 320:1629-1631.
-
(2008)
Science
, vol.320
, pp. 1629-1631
-
-
Emerson, J.J.1
Cardoso-Moreira, M.2
Borevitz, J.O.3
Long, M.4
-
16
-
-
84872476571
-
Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks
-
Feulner PGD, et al. 2013. Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks. Mol Ecol. 22:635-649.
-
(2013)
Mol Ecol.
, vol.22
, pp. 635-649
-
-
Feulner, P.G.D.1
-
17
-
-
56549109526
-
Conditional neutrality at two adjacent NBS-LRR disease resistance loci in natural populations of Arabidopsis lyrata
-
Gos G, Wright SI. 2008. Conditional neutrality at two adjacent NBS-LRR disease resistance loci in natural populations of Arabidopsis lyrata. Mol Ecol. 17:4953-4962.
-
(2008)
Mol Ecol.
, vol.17
, pp. 4953-4962
-
-
Gos, G.1
Wright, S.I.2
-
18
-
-
79952194317
-
Discovery and genotyping of genome structural polymorphism by sequencing on a population scale
-
Handsaker RE, Korn JM, Nemesh J, McCarroll SA. 2011. Discovery and genotyping of genome structural polymorphism by sequencing on a population scale. Nat Genet. 43:269-276.
-
(2011)
Nat Genet.
, vol.43
, pp. 269-276
-
-
Handsaker, R.E.1
Korn, J.M.2
Nemesh, J.3
McCarroll, S.A.4
-
19
-
-
79955468851
-
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
-
Hu TT, et al. 2011. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet. 43:476-481.
-
(2011)
Nat Genet.
, vol.43
, pp. 476-481
-
-
Hu, T.T.1
-
20
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
Hudson RR. 2002. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18:337-338.
-
(2002)
Bioinformatics
, vol.18
, pp. 337-338
-
-
Hudson, R.R.1
-
21
-
-
43049143055
-
Mapping and sequencing of structural variation from eight human genomes
-
Kidd JM, et al. 2008.Mapping and sequencing of structural variation from eight human genomes. Nature 453:56-64.
-
(2008)
Nature
, vol.453
, pp. 56-64
-
-
Kidd, J.M.1
-
22
-
-
84874773677
-
Deleterious alleles in the human genome are on average younger than neutral alleles of the same frequency
-
Kiezun A, et al. 2013. Deleterious alleles in the human genome are on average younger than neutral alleles of the same frequency. PLoS Genet. 9:e1003301.
-
(2013)
PLoS Genet.
, vol.9
-
-
Kiezun, A.1
-
23
-
-
35348988679
-
Paired-end mapping reveals extensive structural variation in the human genome
-
Korbel JO, et al. 2007. Paired-end mapping reveals extensive structural variation in the human genome. Science 318:420-426.
-
(2007)
Science
, vol.318
, pp. 420-426
-
-
Korbel, J.O.1
-
24
-
-
77949587649
-
Fast and accurate long read alignment with Burrows- Wheeler transform
-
Li H, Durbin R. 2010. Fast and accurate long read alignment with Burrows- Wheeler transform. Bioinformatics 26:589-595.
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
25
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, et al. 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25:2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
26
-
-
84881026985
-
Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
-
Long Q, et al. 2013. Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nat Genet. 45:884-890.
-
(2013)
Nat Genet.
, vol.45
, pp. 884-890
-
-
Long, Q.1
-
27
-
-
84863116742
-
A systematic survey of loss-of-function variants in human protein-coding genes
-
MacArthur DG, et al. 2012. A systematic survey of loss-of-function variants in human protein-coding genes. Science 335:823-828.
-
(2012)
Science
, vol.335
, pp. 823-828
-
-
Macarthur, D.G.1
-
28
-
-
84863012360
-
The Drosophila melanogaster genetic reference panel
-
Mackay TFC, et al. 2012. The Drosophila melanogaster genetic reference panel. Nature 482:173-178.
-
(2012)
Nature
, vol.482
, pp. 173-178
-
-
Mackay, T.F.C.1
-
29
-
-
0016335122
-
The age of a rare mutant gene in a large population
-
Maruyama T. 1974. The age of a rare mutant gene in a large population. Am J Hum Genet. 26:669-673.
-
(1974)
Am J Hum Genet.
, vol.26
, pp. 669-673
-
-
Maruyama, T.1
-
30
-
-
84864692624
-
Structural variants in the soybean genome localize to clusters of biotic stress-response genes
-
McHale LK, et al. 2012. Structural variants in the soybean genome localize to clusters of biotic stress-response genes. Plant Physiol. 159: 1295-1308.
-
(2012)
Plant Physiol.
, vol.159
, pp. 1295-1308
-
-
McHale, L.K.1
-
32
-
-
84876523427
-
The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes
-
Montgomery SB, et al. 2013. The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes. Genome Res. 23:749-761.
-
(2013)
Genome Res.
, vol.23
, pp. 749-761
-
-
Montgomery, S.B.1
-
33
-
-
33751329250
-
Global variation in copy number in the human genome
-
Redon R, et al. 2006. Global variation in copy number in the human genome. Nature 444:444-454.
-
(2006)
Nature
, vol.444
, pp. 444-454
-
-
Redon, R.1
-
34
-
-
33644765887
-
Unique evolutionary mechanism in R-genes under the presence/absence polymorphism in Arabidopsis thaliana
-
Shen J, Araki H, Chen L, Chen J-Q, Tian D. 2006. Unique evolutionary mechanism in R-genes under the presence/absence polymorphism in Arabidopsis thaliana. Genetics 172:1243-1250.
-
(2006)
Genetics
, vol.172
, pp. 1243-1250
-
-
Shen, J.1
Araki, H.2
Chen, L.3
Chen, J.-Q.4
Tian, D.5
-
35
-
-
0020858877
-
Molecular identification and isolation of the Waxy locus in maize
-
Shure M, Wessler S, Fedoroff N. 1983. Molecular identification and isolation of the Waxy locus in maize. Cell 35:225-233.
-
(1983)
Cell
, vol.35
, pp. 225-233
-
-
Shure, M.1
Wessler, S.2
Fedoroff, N.3
-
36
-
-
80054968887
-
Identification of a functional transposon insertion in the maize domestication gene tb1
-
Studer A, Zhao Q, Ross-Ibarra J, Doebley J. 2011. Identification of a functional transposon insertion in the maize domestication gene tb1. Nat Genet. 43:1160-1165.
-
(2011)
Nat Genet.
, vol.43
, pp. 1160-1165
-
-
Studer, A.1
Zhao, Q.2
Ross-Ibarra, J.3
Doebley, J.4
-
37
-
-
0000309645
-
Inversions in the third chromosome of wild races of Drosophila pseudoobscura, and their use in the study of the history of the species
-
Sturtevant AH, Dobzhansky T. 1936. Inversions in the third chromosome of wild races of Drosophila pseudoobscura, and their use in the study of the history of the species. Proc Natl Acad Sci U S A. 22: 448-450.
-
(1936)
Proc Natl Acad Sci U S A.
, vol.22
, pp. 448-450
-
-
Sturtevant, A.H.1
Dobzhansky, T.2
-
38
-
-
78549273825
-
Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
-
Swanson-Wagner RA, et al. 2010. Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Res. 20:1689-1699.
-
(2010)
Genome Res.
, vol.20
, pp. 1689-1699
-
-
Swanson-Wagner, R.A.1
-
39
-
-
0037653656
-
Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana
-
Tian D, Traw MB, Chen JQ, Kreitman M, Bergelson J. 2003. Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana. Nature 423: 74-77.
-
(2003)
Nature
, vol.423
, pp. 74-77
-
-
Tian, D.1
Traw, M.B.2
Chen, J.Q.3
Kreitman, M.4
Bergelson, J.5
-
40
-
-
33751342650
-
Statistical tests for detecting positive selection by utilizing high-frequency variants
-
Zeng K, Fu Y-X, Shi S, Wu C-I. 2006. Statistical tests for detecting positive selection by utilizing high-frequency variants. Genetics 174: 1431-1439.
-
(2006)
Genetics
, vol.174
, pp. 1431-1439
-
-
Zeng, K.1
Fu, Y.-X.2
Shi, S.3
Wu, C.-I.4
|