Stress responses of the yeast saccharomyces cerevisiae under high hydrostatic pressure

Stress Biology of Yeasts and Fungi: Applications for Industrial Brewing and Fermentation

Volumn , Issue , 2015, Pages 77-92

  Abe, Fumiyoshi ^a,b  

^a AOYAMA GAKUIN UNIVERSITY   (Japan)

^b JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

Cerevisiae; DAN TIR family genes; Fermentation; Global functional analysis; Global transcriptional analysis; High hydrostatic pressure; High pressure growth mutants; Hsp104; Intracellular acidification; Rsp5 ubiquitin ligase; Saccharomyces; Tryptophan permeases Tat1 and Tat2; Ubiquitination; Volume changes

Indexed keywords

EID: 84943398271     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-4-431-55248-2_5     Document Type: Chapter

References (58)

1. Abe F (1998) Hydrostatic pressure enhances vital staining with carboxyfluorescein or carboxydichlorofluorescein in Saccharomyces cerevisiae: efficient detection of labeled yeasts by flow cytometry. Appl Environ Microbiol 64:1139–1142
2. Abe F (2007) Induction of DAN/TIR yeast cell wall mannoprotein genes in response to high hydrostatic pressure and low temperature. FEBS Lett 581:4993–4998
3. Abe F, Horikoshi K (1997) Vacuolar acidification in Saccharomyces cerevisiae induced by elevated hydrostatic pressure is transient and is mediated by vacuolar H+-ATPase. Extremophiles 1:89–93
4. Abe F, Horikoshi K (1998) Analysis of intracellular pH in the yeast Saccharomyces cerevisiae under elevated hydrostatic pressure: a study in baro-(piezo-)physiology. Extremophiles 2: 223–228
5. Abe F, Horikoshi K (2000) Tryptophan permease gene TAT2 confers high-pressure growth in Saccharomyces cerevisiae. Mol Cell Biol 20:8093–8102
6. Abe F, Horikoshi K (2001) The biotechnological potential of piezophiles. Trends Biotechnol 19: 102–108
7. Abe F, Iida H (2003) Pressure-induced differential regulation of the two tryptophan permeases Tat1 and Tat2 by ubiquitin ligase Rsp5 and its binding proteins, Bul1 and Bul2. Mol Cell Biol 23:7566–7584
8. Abe F, Minegishi H (2008) Global screening of genes essential for growth in high-pressure and cold environments: searching for basic adaptive strategies using a yeast deletion library. Genetics 178:851–872
9. Abe F, Kato C, Horikoshi K (1999) Pressure-regulated metabolism in microorganisms. Trends Microbiol 7:447–453
10. Abramova N, Sertil O, Mehta S, Lowry CV (2001) Reciprocal regulation of anaerobic and aerobic cell wall mannoprotein gene expression in Saccharomyces cerevisiae. J Bacteriol 183: 2881–2887
11. Akasaka K, Kitahara R, Kamatari YO (2013) Exploring the folding energy landscape with pressure. Arch Biochem Biophys 531:110–115
12. Bartlett DH (2002) Pressure effects on in vivo microbial processes. Biochim Biophys Acta 1595:367–381
13. Beck T, Schmidt A, Hall MN (1999) Starvation induces vacuolar targeting and degradation of the tryptophan permease in yeast. J Cell Biol 146:1227–1238
14. Belgareh-Touze N, Leon S, Erpapazoglou Z, Stawiecka-Mirota M, Urban-Grimal D, Haguenauer-Tsapis R (2008) Versatile role of the yeast ubiquitin ligase Rsp5p in intracellular trafficking. Biochem Soc Trans 36:791–796
15. Binda M, Peli-Gulli MP, Bonfils G, Panchaud N, Urban J, Sturgill TW, Loewith R, De Virgilio C (2009) The Vam6 GEF controls TORC1 by activating the EGO complex. Mol Cell 35: 563–573
16. Bravim F, Lippman SI, da Silva LF, Souza DT, Fernandes AA, Masuda CA, Broach JR, Fernandes PM (2013) High hydrostatic pressure activates gene expression that leads to ethanol production enhancement in a Saccharomyces cerevisiae distillery strain. Appl Microbiol Biotechnol 97:2093–2107
17. Chen S, Wang J, Muthusamy BP, Liu K, Zare S, Andersen RJ, Graham TR (2006) Roles for the Drs2p-Cdc50p complex in protein transport and phosphatidylserine asymmetry of the yeast plasma membrane. Traffic 7:1503–1517
18. de Freitas JM, Bravim F, Buss DS, Lemos EM, Fernandes AA, Fernandes PM (2012) Influence of cellular fatty acid composition on the response of Saccharomyces cerevisiae to hydrostatic pressure stress. FEMS Yeast Res 12:871–878
19. Domitrovic T, Fernandes CM, Boy-Marcotte E, Kurtenbach E (2006) High hydrostatic pressure activates gene expression through Msn2/4 stress transcription factors which are involved in the acquired tolerance by mild pressure precondition in Saccharomyces cerevisiae. FEBS Lett 580:6033–6038
20. Dubouloz F, Deloche O, Wanke V, Cameroni E, De Virgilio C (2005) The TOR and EGO protein complexes orchestrate microautophagy in yeast. Mol Cell 19:15–26
21. Fernandes PM, Domitrovic T, Kao CM, Kurtenbach E (2004) Genomic expression pattern in Saccharomyces cerevisiae cells in response to high hydrostatic pressure. FEBS Lett 556: 153–160
22. Fourme R, Girard E, Akasaka K (2012) High-pressure macromolecular crystallography and NMR: status, achievements and prospects. Curr Opin Struct Biol 22:636–642
23. Giaever G, Chu AM, Ni L, Connelly C, Riles L, Veronneau S, Dow S, Lucau-Danila A, Anderson K, Andre B, Arkin AP, Astromoff A, El-Bakkoury M, Bangham R, Benito R, Brachat S, Campanaro S, Curtiss M, Davis K, Deutschbauer A, Entian KD, Flaherty P, Foury F, Garfinkel DJ, Gerstein M, Gotte D, Guldener U, Hegemann JH, Hempel S, Herman Z, Jaramillo DF, Kelly DE, Kelly SL, Kotter P, LaBonte D, Lamb DC, Lan N, Liang H, Liao H, Liu L, Luo C, Lussier M, Mao R, Menard P, Ooi SL, Revuelta JL, Roberts CJ, Rose M, Ross-Macdonald P, Scherens B, Schimmack G, Shafer B, Shoemaker DD, Sookhai-Mahadeo S, Storms RK, Strathern JN, Valle G, Voet M, Volckaert G, Wang CY, Ward TR, Wilhelmy J, Winzeler EA, Yang Y, Yen G, Youngman E, Yu K, Bussey H, Boeke JD, Snyder M, Philippsen P, Davis RW, Johnston M (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature (Lond) 418:387–391
24. Glover JR, Lindquist S (1998) Hsp104, Hsp70, and Hsp40: a novel chaperone system that rescues previously aggregated proteins. Cell 94:73–82
25. Gross M, Jaenicke R (1994) Proteins under pressure. The influence of high hydrostatic pressure on structure, function and assembly of proteins and protein complexes. Eur J Biochem 221: 617–630
26. Gupta R, Kus B, Fladd C, Wasmuth J, Tonikian R, Sidhu S, Krogan NJ, Parkinson J, Rotin D (2007) Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast. Mol Syst Biol 3:116
27. Hamada K, Nakatomi Y, Shimada S (1992) Direct induction of tetraploids or homozygous diploids in the industrial yeast Saccharomyces cerevisiae by hydrostatic pressure. Curr Genet 22: 371–376
28. Hershko A, Ciechanover A (1998) The ubiquitin system. Annu Rev Biochem 67:425–479
29. Hiraki T, Abe F (2010a) Overexpression of Sna3 stabilizes tryptophan permease Tat2, potentially competing for the WW domain of Rsp5 ubiquitin ligase with its binding protein Bul1. FEBS Lett 584:55–60
30. Hiraki T, Abe F (2010b) Overexpression of EAR1 and SSH4 that encode PPxY proteins in the multivesicular body provides stability of tryptophan permease Tat2 allowing yeast cells to grow under high hydrostatic pressure. High Press Res 30:514–518
31. Ichimori H, Hata T, Matsuki H, Kaneshina S (1998) Barotropic phase transitions and pressureinduced interdigitation on bilayer membranes of phospholipids with varying acyl chain lengths. Biochim Biophys Acta 1414:165–174
32. Iwahashi H, Kaul SC, Obuchi K, Komatsu Y (1991) Induction of barotolerance by heat shock treatment in yeast. FEMS Microbiol Lett 64:325–328
33. Iwahashi H, Obuchi K, Fujii S, Komatsu Y (1997) Effect of temperature on the role of Hsp104 and trehalose in barotolerance of Saccharomyces cerevisiae. FEBS Lett 416:1–5
34. Iwahashi H, Nwaka S, Obuchi K (2000) Evidence for contribution of neutral trehalase in barotolerance of Saccharomyces cerevisiae. Appl Environ Microbiol 66:5182–5185
35. Iwahashi H, Shimizu H, Odani M, Komatsu Y (2003) Piezophysiology of genome wide gene expression levels in the yeast Saccharomyces cerevisiae. Extremophiles 7:291–298
36. Iwahashi H, Odani M, Ishidou E, Kitagawa E (2005) Adaptation of Saccharomyces cerevisiae to high hydrostatic pressure causing growth inhibition. FEBS Lett 579:2847–2852
37. Kishimoto T, Yamamoto T, Tanaka K (2005) Defects in structural integrity of ergosterol and the Cdc50p-Drs2p putative phospholipid translocase cause accumulation of endocytic membranes, onto which actin patches are assembled in yeast. Mol Biol Cell 16:5592–5609
38. Kobori H, Sato M, Tameike A, Hamada K, Shimada S, Osumi M (1995) Ultrastructural effects of pressure stress to the nucleus in Saccharomyces cerevisiae: a study by immunoelectron microscopy using frozen thin sections. FEMS Microbiol Lett 132:253–258
39. Lauwers E, Erpapazoglou Z, Haguenauer-Tsapis R, Andre B (2010) The ubiquitin code of yeast permease trafficking. Trends Cell Biol 20:196–204
40. Matsuki H, Goto M, Tada K, Tamai N (2013) Thermotropic and barotropic phase behavior of phosphatidylcholine bilayers. Int J Mol Sci 14:2282–2302
41. Meersman F, Smeller L, Heremans K (2006) Protein stability and dynamics in the pressuretemperature plane. Biochim Biophys Acta 1764:346–354
42. Miura T, Minegishi H, Usami R, Abe F (2006) Systematic analysis of HSP gene expression and effects on cell growth and survival at high hydrostatic pressure in Saccharomyces cerevisiae. Extremophiles 10:279–284
43. Muir H (1995) The chondrocyte, architect of cartilage. Biomechanics, structure, function and molecular biology of cartilage matrix macromolecules. Bioessays 17:1039–1048
44. Nagayama A, Kato C, Abe F (2004) The N- and C-terminal mutations in tryptophan permease Tat2 confer cell growth in Saccharomyces cerevisiae under high-pressure and low-temperature conditions. Extremophiles 8:143–149
45. Oger PM, Jebbar M (2010) The many ways of coping with pressure. Res Microbiol 161:799–809
46. Palhano FL, Orlando MT, Fernandes PM (2004) Induction of baroresistance by hydrogen peroxide, ethanol and cold-shock in Saccharomyces cerevisiae. FEMS Microbiol Lett 233:139–145
47. Perrier-Cornet JM, Marechal PA, Gervais P (1995) A new design intended to relate high pressure treatment to yeast cell mass transfer. J Biotechnol 41:49–58
48. Reineke K, Mathys A, Heinz V, Knorr D (2013) Mechanisms of endospore inactivation under high pressure. Trends Microbiol 21:296–304
49. Rosin MP, Zimmerman AM (1977) The induction of cytoplasmic petite mutants of Saccharomyces cerevisiae by hydrostatic pressure. J Cell Sci 26:373–385
50. Rotin D, Kumar S (2009) Physiological functions of the HECT family of ubiquitin ligases. Nat Rev Mol Cell Biol 10:398–409
51. Sato M, Kobori H, Ishijima SA, Feng ZH, Hamada K, Shimada S, Osumi M (1996) Schizosaccharomyces pombe is more sensitive to pressure stress than Saccharomyces cerevisiae. Cell Struct Funct 21:167–174
52. Sato M, Hasegawa K, Shimada S, Osumi M (1999) Effects of pressure stress on the fission yeast Schizosaccharomyces pombe cold-sensitive mutant nda3. FEMS Microbiol Lett 176:31–38
53. Shimada S, Andou M, Naito N, Yamada N, Osumi M, Hayashi R (1993) Effects of hydrostatic pressure on the ultrastructure and leakage of internal substances in the yeast Saccharomyces cerevisiae. Appl Microbiol Biotechnol 40:123–131
54. Suzuki A, Mochizuki T, Uemura S, Hiraki T, Abe F (2013) Pressure-induced endocytic degradation of the Saccharomyces cerevisiae low-affinity tryptophan permease Tat1 is mediated by Rsp5 ubiquitin ligase and functionally redundant PPxY motif proteins. Eukaryot Cell 12: 990–997
55. Tamura K, Kamiki Y, Miyashita M (1999) Measurement of microbial activities under high pressure by calorimetry. In: Ludwig H (ed) Advances in high pressure bioscience and biotechnology. Springer, Heidelberg, pp 47–50
56. Winter R (2002) Synchrotron X-ray and neutron small-angle scattering of lyotropic lipid mesophases, model biomembranes and proteins in solution at high pressure. Biochim Biophys Acta 1595:160–184
57. Yashiroda H, Oguchi T, Yasuda Y, Toh EA, Kikuchi Y (1996) Bul1, a new protein that binds to the Rsp5 ubiquitin ligase in Saccharomyces cerevisiae. Mol Cell Biol 16:3255–3263
58. Yayanos AA (1995) Microbiology to 10,500 meters in the deep sea. Annu Rev Microbiol 49: 777–805