메뉴 건너뛰기




Volumn 17, Issue 8, 2015, Pages 557-563

Mammalian RNA virus-derived small RNA: Biogenesis and functional activity

Author keywords

Mammalian; RNA virus; RNAi; SiRNA; Small RNA; vsRNA

Indexed keywords

MICRORNA; RNA; UNCLASSIFIED DRUG; VIRUS DERIVED SMALL RNA; DNA VIRUS; SMALL INTERFERING RNA;

EID: 84942836347     PISSN: 12864579     EISSN: 1769714X     Source Type: Journal    
DOI: 10.1016/j.micinf.2015.04.005     Document Type: Review
Times cited : (9)

References (54)
  • 1
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 1998;391:806-11.
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 2
    • 0033615491 scopus 로고    scopus 로고
    • A species of small antisense RNA in posttranscriptional gene silencing in plants
    • Hamilton AJ, Baulcombe DC. A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 1999;286:950-2.
    • (1999) Science , vol.286 , pp. 950-952
    • Hamilton, A.J.1    Baulcombe, D.C.2
  • 3
    • 77956170809 scopus 로고    scopus 로고
    • RNA-based antiviral immunity
    • Ding SW. RNA-based antiviral immunity. Nat Rev Immunol 2010;10:632-44.
    • (2010) Nat Rev Immunol , vol.10 , pp. 632-644
    • Ding, S.W.1
  • 4
    • 34547587566 scopus 로고    scopus 로고
    • Antiviral immunity directed by small RNAs
    • Ding SW, Voinnet O. Antiviral immunity directed by small RNAs. Cell 2007;130:413-26.
    • (2007) Cell , vol.130 , pp. 413-426
    • Ding, S.W.1    Voinnet, O.2
  • 5
    • 77955902024 scopus 로고    scopus 로고
    • The widespread regulation of micro-RNA biogenesis, function and decay
    • Krol J, Loedige I, Filipowicz W. The widespread regulation of micro-RNA biogenesis, function and decay. Nat Rev Genet 2010;11:597-610.
    • (2010) Nat Rev Genet , vol.11 , pp. 597-610
    • Krol, J.1    Loedige, I.2    Filipowicz, W.3
  • 7
    • 84872021739 scopus 로고    scopus 로고
    • Virus-encoded microRNAs: an overview and a look to the future
    • Kincaid RP, Sullivan CS. Virus-encoded microRNAs: an overview and a look to the future. PLoS Pathog 2012;8:e1003018.
    • (2012) PLoS Pathog , vol.8
    • Kincaid, R.P.1    Sullivan, C.S.2
  • 8
    • 77649239548 scopus 로고    scopus 로고
    • Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems
    • Parameswaran P, Sklan E, Wilkins C, Burgon T, Samuel MA, Lu R, et al. Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems. PLoS Pathog 2010;6:e1000764.
    • (2010) PLoS Pathog , vol.6
    • Parameswaran, P.1    Sklan, E.2    Wilkins, C.3    Burgon, T.4    Samuel, M.A.5    Lu, R.6
  • 9
    • 78650431139 scopus 로고    scopus 로고
    • Functional microRNA generated from a cytoplasmic RNA virus
    • Rouha H, Thurner C, Mandl CW. Functional microRNA generated from a cytoplasmic RNA virus. Nucleic Acids Res 2010;38:8328-37.
    • (2010) Nucleic Acids Res , vol.38 , pp. 8328-8337
    • Rouha, H.1    Thurner, C.2    Mandl, C.W.3
  • 10
    • 78149316877 scopus 로고    scopus 로고
    • Noncanonical cytoplasmic processing of viral microRNAs
    • Shapiro JS, Varble A, Pham AM, Tenoever BR. Noncanonical cytoplasmic processing of viral microRNAs. RNA 2010;16:2068-74.
    • (2010) RNA , vol.16 , pp. 2068-2074
    • Shapiro, J.S.1    Varble, A.2    Pham, A.M.3    Tenoever, B.R.4
  • 11
    • 84862587403 scopus 로고    scopus 로고
    • Evidence for a cytoplasmic microprocessor of pri-miRNAs
    • Shapiro JS, Langlois RA, Pham AM, Tenoever BR. Evidence for a cytoplasmic microprocessor of pri-miRNAs. RNA 2012;18:1338-46.
    • (2012) RNA , vol.18 , pp. 1338-1346
    • Shapiro, J.S.1    Langlois, R.A.2    Pham, A.M.3    Tenoever, B.R.4
  • 12
    • 84926106676 scopus 로고    scopus 로고
    • A cytoplasmic RNA virus generates functional viral small RNAs and regulates viral IRES activity in mammalian cells
    • Weng KF, Hung CT, Hsieh PT, Li ML, Chen GW, Kung YA, et al. A cytoplasmic RNA virus generates functional viral small RNAs and regulates viral IRES activity in mammalian cells. Nucleic Acids Res 2014;42:12789-805.
    • (2014) Nucleic Acids Res , vol.42 , pp. 12789-12805
    • Weng, K.F.1    Hung, C.T.2    Hsieh, P.T.3    Li, M.L.4    Chen, G.W.5    Kung, Y.A.6
  • 14
    • 84885635441 scopus 로고    scopus 로고
    • RNA interference functions as an antiviral immunity mechanism in mammals
    • Li Y, Lu J, Han Y, Fan X, Ding SW. RNA interference functions as an antiviral immunity mechanism in mammals. Science 2013;342:231-4.
    • (2013) Science , vol.342 , pp. 231-234
    • Li, Y.1    Lu, J.2    Han, Y.3    Fan, X.4    Ding, S.W.5
  • 15
    • 44649136660 scopus 로고    scopus 로고
    • Autoinhibition of human dicer by its internal helicase domain
    • Ma E, MacRae IJ, Kirsch JF, Doudna JA. Autoinhibition of human dicer by its internal helicase domain. J Mol Biol 2008;380:237-43.
    • (2008) J Mol Biol , vol.380 , pp. 237-243
    • Ma, E.1    MacRae, I.J.2    Kirsch, J.F.3    Doudna, J.A.4
  • 16
    • 84887865235 scopus 로고    scopus 로고
    • A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes
    • Flemr M, Malik R, Franke V, Nejepinska J, Sedlacek R, Vlahovicek K, et al. A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes. Cell 2013; 155:807-16.
    • (2013) Cell , vol.155 , pp. 807-816
    • Flemr, M.1    Malik, R.2    Franke, V.3    Nejepinska, J.4    Sedlacek, R.5    Vlahovicek, K.6
  • 17
    • 84908375115 scopus 로고    scopus 로고
    • Viruses and RNA interference: issues and controversies
    • Cullen BR. Viruses and RNA interference: issues and controversies. J Virol 2014;88:12934-6.
    • (2014) J Virol , vol.88 , pp. 12934-12936
    • Cullen, B.R.1
  • 18
    • 84891595161 scopus 로고    scopus 로고
    • Identification of RNase L-dependent, 3'-end-modified, viral small RNAs in Sindbis virus-infected mammalian cells
    • Girardi E, Chane-Woon-Ming B, Messmer M, Kaukinen P, Pfeffer S. Identification of RNase L-dependent, 3'-end-modified, viral small RNAs in Sindbis virus-infected mammalian cells. MBio 2013;4:e00698-13.
    • (2013) MBio , vol.4
    • Girardi, E.1    Chane-Woon-Ming, B.2    Messmer, M.3    Kaukinen, P.4    Pfeffer, S.5
  • 20
    • 79952068189 scopus 로고    scopus 로고
    • Influenza A virus expresses high levels of an unusual class of small viral leader RNAs in infected cells
    • Umbach JL, Yen HL, Poon LL, Cullen BR. Influenza A virus expresses high levels of an unusual class of small viral leader RNAs in infected cells. MBio 2010;1.
    • (2010) MBio , vol.1
    • Umbach, J.L.1    Yen, H.L.2    Poon, L.L.3    Cullen, B.R.4
  • 22
    • 84881238516 scopus 로고    scopus 로고
    • Serotype-specific differences in dengue virus non-structural protein 5 nuclear localization
    • Hannemann H, Sung PY, Chiu HC, Yousuf A, Bird J, Lim SP, et al. Serotype-specific differences in dengue virus non-structural protein 5 nuclear localization. J Biol Chem 2013;288:22621-35.
    • (2013) J Biol Chem , vol.288 , pp. 22621-22635
    • Hannemann, H.1    Sung, P.Y.2    Chiu, H.C.3    Yousuf, A.4    Bird, J.5    Lim, S.P.6
  • 23
    • 84875802186 scopus 로고    scopus 로고
    • Nuclear localization of dengue virus nonstructural protein 5 does not strictly correlate with efficient viral RNA replication and inhibition of type I interferon signaling
    • Kumar A, Buhler S, Selisko B, Davidson A, Mulder K, Canard B, et al. Nuclear localization of dengue virus nonstructural protein 5 does not strictly correlate with efficient viral RNA replication and inhibition of type I interferon signaling. J Virol 2013;87:4545-57.
    • (2013) J Virol , vol.87 , pp. 4545-4557
    • Kumar, A.1    Buhler, S.2    Selisko, B.3    Davidson, A.4    Mulder, K.5    Canard, B.6
  • 24
    • 84884542325 scopus 로고    scopus 로고
    • Nuclear localization of dengue virus (DENV) 1-4 non-structural protein 5; protection against all 4 DENV serotypes by the inhibitor Ivermectin
    • Tay MY, Fraser JE, Chan WK, Moreland NJ, Rathore AP, Wang C, et al. Nuclear localization of dengue virus (DENV) 1-4 non-structural protein 5; protection against all 4 DENV serotypes by the inhibitor Ivermectin. Antivir Res 2013;99:301-6.
    • (2013) Antivir Res , vol.99 , pp. 301-306
    • Tay, M.Y.1    Fraser, J.E.2    Chan, W.K.3    Moreland, N.J.4    Rathore, A.P.5    Wang, C.6
  • 25
    • 84857468000 scopus 로고    scopus 로고
    • Production of virus-derived ping-pong-dependent piRNA-like small RNAs in the mosquito soma
    • Morazzani EM, Wiley MR, Murreddu MG, Adelman ZN, Myles KM. Production of virus-derived ping-pong-dependent piRNA-like small RNAs in the mosquito soma. PLoS Pathog 2012;8:e1002470.
    • (2012) PLoS Pathog , vol.8
    • Morazzani, E.M.1    Wiley, M.R.2    Murreddu, M.G.3    Adelman, Z.N.4    Myles, K.M.5
  • 26
  • 27
    • 77950446517 scopus 로고    scopus 로고
    • MicroRNA antagonism of the picornaviral life cycle: alternative mechanisms of interference
    • Kelly EJ, Hadac EM, Cullen BR, Russell SJ. MicroRNA antagonism of the picornaviral life cycle: alternative mechanisms of interference. PLoS Pathog 2010;6:e1000820.
    • (2010) PLoS Pathog , vol.6
    • Kelly, E.J.1    Hadac, E.M.2    Cullen, B.R.3    Russell, S.J.4
  • 28
    • 0037123630 scopus 로고    scopus 로고
    • Induction and suppression of RNA silencing by an animal virus
    • Li H, Li WX, Ding SW. Induction and suppression of RNA silencing by an animal virus. Science 2002;296:1319-21.
    • (2002) Science , vol.296 , pp. 1319-1321
    • Li, H.1    Li, W.X.2    Ding, S.W.3
  • 30
    • 10744225684 scopus 로고    scopus 로고
    • Interferon antagonist proteins of influenza and vaccinia viruses are suppressors of RNA silencing
    • Li WX, Li H, Lu R, Li F, Dus M, Atkinson P, et al. Interferon antagonist proteins of influenza and vaccinia viruses are suppressors of RNA silencing. Proc Natl Acad Sci U. S. A 2004;101:1350-5.
    • (2004) Proc Natl Acad Sci U. S. A , vol.101 , pp. 1350-1355
    • Li, W.X.1    Li, H.2    Lu, R.3    Li, F.4    Dus, M.5    Atkinson, P.6
  • 31
    • 19944420154 scopus 로고    scopus 로고
    • A virus-encoded inhibitor that blocks RNA interference in mammalian cells
    • Sullivan CS, Ganem D. A virus-encoded inhibitor that blocks RNA interference in mammalian cells. J Virol 2005;79:7371-9.
    • (2005) J Virol , vol.79 , pp. 7371-7379
    • Sullivan, C.S.1    Ganem, D.2
  • 32
    • 46249115827 scopus 로고    scopus 로고
    • Interferon-inducible antiviral effectors
    • Sadler AJ, Williams BR. Interferon-inducible antiviral effectors. Nat Rev Immunol 2008;8:559-68.
    • (2008) Nat Rev Immunol , vol.8 , pp. 559-568
    • Sadler, A.J.1    Williams, B.R.2
  • 33
    • 79955542915 scopus 로고    scopus 로고
    • A diverse range of gene products are effectors of the type I interferon antiviral response
    • Schoggins JW, Wilson SJ, Panis M, Murphy MY, Jones CT, Bieniasz P, et al. A diverse range of gene products are effectors of the type I interferon antiviral response. Nature 2011;472:481-5.
    • (2011) Nature , vol.472 , pp. 481-485
    • Schoggins, J.W.1    Wilson, S.J.2    Panis, M.3    Murphy, M.Y.4    Jones, C.T.5    Bieniasz, P.6
  • 35
    • 84894328203 scopus 로고    scopus 로고
    • MicroRNA-like viral small RNA from Dengue virus 2 autoregulates its replication in mosquito cells
    • Hussain M, Asgari S. MicroRNA-like viral small RNA from Dengue virus 2 autoregulates its replication in mosquito cells. Proc Natl Acad Sci U. S. A 2014;111:2746-51.
    • (2014) Proc Natl Acad Sci U. S. A , vol.111 , pp. 2746-2751
    • Hussain, M.1    Asgari, S.2
  • 36
    • 84907694855 scopus 로고    scopus 로고
    • Novel microRNAlike viral small regulatory RNAs arising during human hepatitis A virus infection
    • Shi J, Sun J, Wang B, Wu M, Zhang J, Duan Z, et al. Novel microRNAlike viral small regulatory RNAs arising during human hepatitis A virus infection. FASEB J 2014;28:4381-93.
    • (2014) FASEB J , vol.28 , pp. 4381-4393
    • Shi, J.1    Sun, J.2    Wang, B.3    Wu, M.4    Zhang, J.5    Duan, Z.6
  • 37
    • 84874046758 scopus 로고    scopus 로고
    • RNA viruses and the host microRNA machinery
    • tenOever BR. RNA viruses and the host microRNA machinery. Nat Rev Microbiol 2013;11:169-80.
    • (2013) Nat Rev Microbiol , vol.11 , pp. 169-180
    • tenOever, B.R.1
  • 38
    • 84860389888 scopus 로고    scopus 로고
    • RNA-ligase-dependent biases in miRNA representation in deepsequenced small RNA cDNA libraries
    • Hafner M, Renwick N, Brown M, Mihailovic A, Holoch D, Lin C, et al. RNA-ligase-dependent biases in miRNA representation in deepsequenced small RNA cDNA libraries. RNA 2011;17:1697-712.
    • (2011) RNA , vol.17 , pp. 1697-1712
    • Hafner, M.1    Renwick, N.2    Brown, M.3    Mihailovic, A.4    Holoch, D.5    Lin, C.6
  • 40
    • 84885995929 scopus 로고    scopus 로고
    • Reciprocal inhibition between intracellular antiviral signaling and the RNAi machinery in mammalian cells
    • Seo GJ, Kincaid RP, Phanaksri T, Burke JM, Pare JM, Cox JE, et al. Reciprocal inhibition between intracellular antiviral signaling and the RNAi machinery in mammalian cells. Cell Host Microbe 2013; 14:435-45.
    • (2013) Cell Host Microbe , vol.14 , pp. 435-445
    • Seo, G.J.1    Kincaid, R.P.2    Phanaksri, T.3    Burke, J.M.4    Pare, J.M.5    Cox, J.E.6
  • 41
    • 84904038337 scopus 로고    scopus 로고
    • The Mammalian response to virus infection is independent of small RNA silencing
    • Backes S, Langlois RA, Schmid S, Varble A, Shim JV, Sachs D, et al. The Mammalian response to virus infection is independent of small RNA silencing. Cell Rep 2014;8:114-25.
    • (2014) Cell Rep , vol.8 , pp. 114-125
    • Backes, S.1    Langlois, R.A.2    Schmid, S.3    Varble, A.4    Shim, J.V.5    Sachs, D.6
  • 42
    • 84904600856 scopus 로고    scopus 로고
    • Replication of many human viruses is refractory to inhibition by endogenous cellular microRNAs
    • Bogerd HP, Skalsky RL, Kennedy EM, Furuse Y, Whisnant AW, Flores O, et al. Replication of many human viruses is refractory to inhibition by endogenous cellular microRNAs. J Virol 2014;88:8065-76.
    • (2014) J Virol , vol.88 , pp. 8065-8076
    • Bogerd, H.P.1    Skalsky, R.L.2    Kennedy, E.M.3    Furuse, Y.4    Whisnant, A.W.5    Flores, O.6
  • 43
    • 33144478111 scopus 로고    scopus 로고
    • MicroRNA-guided processing impairs plum pox virus replication, but the virus readily evolves to escape this silencing mechanism
    • Simon-Mateo C, Garcia JA. MicroRNA-guided processing impairs plum pox virus replication, but the virus readily evolves to escape this silencing mechanism. J Virol 2006;80:2429-36.
    • (2006) J Virol , vol.80 , pp. 2429-2436
    • Simon-Mateo, C.1    Garcia, J.A.2
  • 44
    • 84880172797 scopus 로고    scopus 로고
    • Virus-induced gene silencing using artificial miRNAs in Nicotiana benthamiana
    • Tang Y, Lai Y, Liu Y. Virus-induced gene silencing using artificial miRNAs in Nicotiana benthamiana. Methods Mol Biol 2013;975:99-107.
    • (2013) Methods Mol Biol , vol.975 , pp. 99-107
    • Tang, Y.1    Lai, Y.2    Liu, Y.3
  • 45
    • 24644483623 scopus 로고    scopus 로고
    • Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA
    • Jopling CL, Yi M, Lancaster AM, Lemon SM, Sarnow P. Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA. Science 2005;309:1577-81.
    • (2005) Science , vol.309 , pp. 1577-1581
    • Jopling, C.L.1    Yi, M.2    Lancaster, A.M.3    Lemon, S.M.4    Sarnow, P.5
  • 46
    • 0034466776 scopus 로고    scopus 로고
    • Influenza A virus NS1 protein prevents activation of NF-kappaB and induction of alpha/beta interferon
    • Wang X, Li M, Zheng H, Muster T, Palese P, Beg AA, et al. Influenza A virus NS1 protein prevents activation of NF-kappaB and induction of alpha/beta interferon. J Virol 2000;74:11566-73.
    • (2000) J Virol , vol.74 , pp. 11566-11573
    • Wang, X.1    Li, M.2    Zheng, H.3    Muster, T.4    Palese, P.5    Beg, A.A.6
  • 48
    • 57149092384 scopus 로고    scopus 로고
    • Influenza A virus inhibits type I IFN signaling via NF-kappaB-dependent induction of SOCS-3 expression
    • Pauli EK, Schmolke M, Wolff T, Viemann D, Roth J, Bode JG, et al. Influenza A virus inhibits type I IFN signaling via NF-kappaB-dependent induction of SOCS-3 expression. PLoS Pathog 2008;4:e1000196.
    • (2008) PLoS Pathog , vol.4
    • Pauli, E.K.1    Schmolke, M.2    Wolff, T.3    Viemann, D.4    Roth, J.5    Bode, J.G.6
  • 49
    • 84861309966 scopus 로고    scopus 로고
    • Enterovirus 71 disrupts interferon signaling by reducing the level of interferon receptor 1
    • Lu J, Yi L, Zhao J, Yu J, Chen Y, Lin MC, et al. Enterovirus 71 disrupts interferon signaling by reducing the level of interferon receptor 1. J Virol 2012;86:3767-76.
    • (2012) J Virol , vol.86 , pp. 3767-3776
    • Lu, J.1    Yi, L.2    Zhao, J.3    Yu, J.4    Chen, Y.5    Lin, M.C.6
  • 51
    • 84907857011 scopus 로고    scopus 로고
    • Enterovirus 71 infects brain-derived neural progenitor cells
    • Huang HI, Lin JY, Chen HH, Yeh SB, Kuo RL, Weng KF, et al. Enterovirus 71 infects brain-derived neural progenitor cells. Virology 2014;468-470:592-600.
    • (2014) Virology , vol.468-470 , pp. 592-600
    • Huang, H.I.1    Lin, J.Y.2    Chen, H.H.3    Yeh, S.B.4    Kuo, R.L.5    Weng, K.F.6
  • 53
    • 33947531683 scopus 로고    scopus 로고
    • Neurodevelopment and cognition in children after enterovirus 71 infection
    • Chang LY, Huang LM, Gau SS, Wu YY, Hsia SH, Fan TY, et al. Neurodevelopment and cognition in children after enterovirus 71 infection. N Engl J Med 2007;356:1226-34.
    • (2007) N Engl J Med , vol.356 , pp. 1226-1234
    • Chang, L.Y.1    Huang, L.M.2    Gau, S.S.3    Wu, Y.Y.4    Hsia, S.H.5    Fan, T.Y.6
  • 54
    • 84893438707 scopus 로고    scopus 로고
    • Aversatile RNAvector for delivery of coding and noncoding RNAs
    • Schmid S, Zony LC, tenOever BR. Aversatile RNAvector for delivery of coding and noncoding RNAs. J Virol 2014;88:2333-6.
    • (2014) J Virol , vol.88 , pp. 2333-2336
    • Schmid, S.1    Zony, L.C.2    tenOever, B.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.