Compressed sensing traction force microscopy

Acta Biomaterialia

Volumn 26, Issue , 2015, Pages 286-294

  Brask, Jonatan Bohr ^a   Singla Buxarrais, Guillem ^b   Uroz, Marina ^b   Vincent, Romaric ^b   Trepat, Xavier ^b,c,d  

^a UNIVERSITY OF GENEVA   (Switzerland)

^b INSTITUTE FOR BIOENGINEERING OF CATALONIA IBEC   (Spain)

^c INSTITUCIÓ CATALANA DE RECERCA I ESTUDIS AVANÇATS ICREA   (Spain)

^d UNIVERSITY OF BARCELONA   (Spain)

Author keywords

Compressed sensing; High resolution; Traction force microscopy

Indexed keywords

CELLS; CYTOLOGY; DISEASES; IMAGE RESOLUTION; SPURIOUS SIGNAL NOISE; TRACTION (FRICTION);

ADHERENT CELLS; CANCER INVASION; COMPRESSED-SENSING; DISPLACEMENT FIELD; HIGH RESOLUTION; MEASUREMENT NOISE; NOISE ROBUSTNESS; SPATIAL RESOLUTION; TRACTION FIELDS; TRACTION FORCE MICROSCOPIES;

COMPRESSED SENSING;

ARTICLE; COMPRESSED SENSING; COMPRESSION; DENSITY; FOCAL ADHESION; FORCE; FOURIER TRANSFORMATION; LIMIT OF DETECTION; MICROSCOPY; PRIORITY JOURNAL; SAMPLING; SIGNAL NOISE RATIO; SIMULATION; TRACTION FORCE MICROSCOPY; ALGORITHM; ATOMIC FORCE MICROSCOPY; BIOLOGICAL MODEL; CELL ADHESION; COMPUTER ASSISTED DIAGNOSIS; COMPUTER SIMULATION; MANOMETRY; MATERIALS TESTING; MECHANICAL STRESS; PHYSIOLOGY; PROCEDURES; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY;

ALGORITHMS; CELL ADHESION; COMPUTER SIMULATION; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MANOMETRY; MATERIALS TESTING; MICROSCOPY, ATOMIC FORCE; MODELS, BIOLOGICAL; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; STRESS, MECHANICAL;

EID: 84942293448     PISSN: 17427061     EISSN: 18787568     Source Type: Journal    
DOI: 10.1016/j.actbio.2015.08.023     Document Type: Article

References (40)

1. P.E. Young, A.M. Richman, and A.S. Ketchum Morphogenesis in drosophila requires nonmuscle myosin heavy chain function Genes Dev. 7 1 1993 29 41 10.1101/gad.7.1.29 URL http://genesdev.cshlp.org/content/7/1/29.abstract
2. C.-P. Heisenberg, and Y. Bellaiche Forces in tissue morphogenesis and patterning Cell 153 5 2013 948 962
3. P. Rickert, O.D. Weiner, F. Wang, H.R. Bourne, and G. Servant Leukocytes navigate by compass: roles of pi3kγ and its lipid products Trends Cell Biol. 10 11 2000 466 473 URL http://www.cell.com/trends/cell-biology/abstract/S0962-8924(00)01841-9
4. A. Brugues, E. Anon, V. Conte, J.H. Veldhuis, M. Gupta, J. Colombelli, J.J. Munoz, G.W. Brodland, B. Ladoux, and X. Trepat Forces driving epithelial wound healing Nat. Phys. 10 9 2014 683 690 10.1038/nphys3040
5. P. Friedl, and D. Gilmour Collective cell migration in morphogenesis, regeneration and cancer Nat. Rev. Mol. Cell Biol. 10 7 2009 445 457 10.1038/nrm2720
6. R.A.F. Clark, and P.M. Henson The Molecular and Cellular Biology of Wound Repair 1988 Plenum Press (NY)
7. K. Wolf, M. te Lindert, M. Krause, S. Alexander, J. te Riet, A.L. Willis, R.M. Hoffman, C.G. Figdor, S.J. Weiss, and P. Friedl Physical limits of cell migration: control by ecm space and nuclear deformation and tuning by proteolysis and traction force J. Cell Biol. 201 7 2013 1069 1084 10.1083/jcb.201210152 URL http://jcb.rupress.org/content/201/7/1069.abstract
8. M. Tamada, M.P. Sheetz, and Y. Sawada Activation of a signaling cascade by cytoskeleton stretch Dev. Cell 7 5 2004 709 718 URL http://www.cell.com/developmental-cell/abstract/S1534-5807(04)00337-5
9. C.E. Chan, and D.J. Odde Traction dynamics of filopodia on compliant substrate Science 322 5908 2008 1687 1691 10.1126/science.1163595
10. B.P. Chen, Y.S. Li, Y.H. Zhao, K.D. Chen, S. Li, J.M. Lao, S.L. Yuan, J.Y.J. Shyy, and S. Chien Dna microarray analysis of gene expression in endothelial cells in response to 24-h shear stress Physiol. Genomics 7 1 2001 55 63
11. A.J. Engler, S. Sen, H.L. Sweeney, and D.E. Discher Matrix elasticity directs stem cell lineage specification Cell 126 4 2006 677 689 doi: 10.1016/j.cell.2006.06.044
12. M.J. Paszek, N. Zahir, K.R. Johnson, J.N. Lakins, G.I. Rozenberg, A. Gefen, C.A. Reinhart-King, S.S. Margulies, M. Dembo, D. Boettiger, D.A. Hammer, and V.M. Weaver Tensional homeostasis and the malignant phenotype Cancer Cell 8 3 2005 241 254 URL http://www.cell.com/cancer-cell/abstract/S1535-6108(05)00268-0
13. R.W. Style, R. Boltyanskiy, G.K. German, C. Hyland, C.W. MacMinn, A.F. Mertz, L.A. Wilen, Y. Xu, and E.R. Dufresne Traction force microscopy in physics and biology Soft Matter 10 2014 4047 4055
14. M. Dembo, and Y.-L. Wang Stresses at the cell-to-substrate interface during locomotion of fibroblasts Biophys. J. 76 4 1999 2307 2316 10.1016/S0006-3495(99)77386-8
15. J.P. Butler, I.M. Tolić-Norrelykke, B. Fabry, and J.J. Fredberg Traction fields, moments, and strain energy that cells exert on their surroundings Am. J. Physiol. - Cell Physiol. 282 3 2002 C595 C605 10.1152/ajpcell.00270.2001
16. D. Ambrosi Cellular traction as an inverse problem SIAM J. Appl. Math. 66 2006 2049 2060
17. V. Peschetola, V. Laurent, A. Duperray, R. Michel, and D. Ambrosi Time-dependent traction force microscopy for cancer cells as a measure of invasiveness Cytoskeleton 70 2013 201 214
18. B. Sabass, M.L. Gardel, C.M. Waterman, and U.S. Schwarz High resolution traction force microscopy based on experimental and computational advances Biophys. J. 94 1 2008 207 220 URL http://www.cell.com/biophysj/abstract/S0006-3495(08)70780-X
19. J. Stricker, B. Sabass, U.S. Schwarz, and M.L. Gardel Optimization of traction force microscopy for micron-sized focal adhesions J. Phys.: Condens. Matter 22 19 2010 194104 URL http://stacks.iop.org/0953-8984/22/i=19/a=194104
20. X. Trepat, M.R. Wasserman, T.E. Angelini, E. Millet, D.A. Weitz, J.P. Butler, and J.J. Fredberg Physical forces during collective cell migration Nat. Phys. 5 6 2009 426 430 10.1038/nphys1269
21. S.A. Maskarinec, C. Franck, D.A. Tirrell, and G. Ravichandran Quantifying cellular traction forces in three dimensions PNAS 106 2009 22108 22113
22. D.-H. Kim, and D. Wirtz Focal adhesion size uniquely predicts cell migration FASEB J. 27 4 2013 1351 1361 10.1096/fj.12-220160
23. E.J. Candès, J.K. Romberg, and T. Tao Stable signal recovery from incomplete and inaccurate measurements Commun. Pure Appl. Math. 59 8 2006 1207 1223 10.1002/cpa.20124
24. D.L. Donoho Compressed sensing IEEE Trans. Inf. Theory 52 2006 1289 1306
25. F.J. Herrmann, M.P. Friedlander, and O. Yilmaz Fighting the curse of dimensionality: compressive sensing in exploration seismology IEEE Signal Process. Mag. 29 3 2012 88 100 10.1109/MSP.2012.2185859
26. J. Bobin, J.-L. Starck, and R. Ottensamer Compressed sensing in astronomy IEEE J. Sel. Top. Sign. Process. 2 5 2008 718 726 10.1109/JSTSP.2008.2005337
27. M. Lustig, D. Donoho, J. Santos, and J. Pauly Compressed sensing MRI IEEE Signal Process. Mag. 25 2 2008 72 82 10.1109/MSP.2007.914728
28. V. Studer, J. Bobin, M. Chahid, H.S. Mousavi, E. Candes, and M. Dahan Compressive fluorescence microscopy for biological and hyperspectral imaging Proc. Nat. Acad. Sci. 109 26 2012 E1679 E1687 10.1073/pnas.1119511109 URL http://www.pnas.org/content/109/26/E1679.abstract
29. L. Zhu, W. Zhang, D. Elnatan, and B. Huang Faster storm using compressed sensing Nat. Methods 9 7 2012 721 723 10.1038/nmeth.1978
30. L.D. Landau, E.M. Lifshitz (Eds.), Theory of Elasticity; In Course of Theoretical Physics, vol. 7 (third ed.), Pergamon Press, Oxford, UK, 1986.
31. R. Merkel, N. Kirchgener, C.M. Cesa, and B. Hoffmann Cell force microscopy on elastic layers of finite thickness Biophys. J. 93 9 2007 3314 3323 URL http://www.cell.com/biophysj/abstract/S0006-3495(07)71585-0
32. N.Q. Balaban, U.S. Schwarz, D. Riveline, P. Goichberg, G. Tzur, I. Sabanay, D. Mahalu, S. Safran, A. Bershadsky, L. Addadi, and B. Geiger Force and focal adhesion assembly: a close relationship studied using elastic micro-patterned substrates Nat. Cell Biol. 3 2001 466 472
33. U. Schwartz, N. Balaban, D. Riveline, A. Bershadsky, B. Geiger, and S. Safran Calculation of forces at focal adhesions from elastic substrate data: the effect of localized force and the need for regularization Biophys. J. 3 83 2002 1380
34. R.D. Keane, and R.J. Adrian Optimization of particle image velocimeters. Part I: Double pulsed systems Meas. Sci. Technol. 1 1990 1202 1215
35. I.M. Tolic-Norrelykke, J.P. Butler, J.X. Chen, and N. Wang Spatial and temporal traction response in human airway smooth muscle cells Am. J. Physiol. - Cell Physiol. 283 4 2002 C1254 C1266 10.1152/ajpcell.00169.2002
36. L. Gui, and S.T. Wereley A correlation-based continuous window-shift technique to reduce the peak-locking effect in digital piv image evaluation Exp. Fluids 32 4 2002 506 517 10.1007/s00348-001-0396-1
37. S.J. Han, Y. Oak, A. Groisman, and G. Danuser Traction microscopy to identify force modulation in subresolution adhesions Nat. Methods 12 2015 653 656 10.1038/nmeth.3430
38. C.K. Choi, M. Vicente-Manzanares, J. Zareno, L. Whitmore, A. Mogilner, and A.R. Horwitz Actin and alpha-actinin orchestrate the assembly and maturation of nascent adhesions in a myosin ii motor-independent manner Nat. Cell Biol. 10 2008 1039-U36
39. J.C. del Álamo, R. Meili, B. Álvarez González, B. Alonso-Latorre, E. Bastounis, R. Firtel, and J.C. Lasheras Three-dimensional quantification of cellular traction forces and mechanosensing of thin substrata by fourier traction force microscopy PLos ONE 8 2013 e69850
40. W.R. Legant, C.K. Choi, J.S. Miller, L. Shao, L. Gao, E. Betzig, and C.S. Chen Multidimensional traction force microscopy reveals out-of-plane rotational moments about focal adhesions Proc. Nat. Acad. Sci. 110 3 2013 881 886 10.1073/pnas.1207997110