-
1
-
-
84862525682
-
Network-induced classification kernels for gene expression profile analysis
-
Lavi, O., Dror, G. And Shamir, R. (2012) Network-induced classification kernels for gene expression profile analysis. J. Comput. Biol., 19, 694-709.
-
(2012)
J. Comput. Biol.
, vol.19
, pp. 694-709
-
-
Lavi, O.1
Dror, G.2
Shamir, R.3
-
2
-
-
84857467301
-
Single sample expression-anchored mechanisms predict survival in head and neck cancer
-
Yang, X., Regan, K., Huang, Y., Zhang, Q., Li, J., Seiwert, T. Y., Cohen, E. E., Xing, H. R. And Lussier, Y. A. (2012) Single sample expression-anchored mechanisms predict survival in head and neck cancer. PLoS Comput. Biol., 8, e1002350.
-
(2012)
PLoS Comput. Biol.
, vol.8
, pp. e1002350
-
-
Yang, X.1
Regan, K.2
Huang, Y.3
Zhang, Q.4
Li, J.5
Seiwert, T.Y.6
Cohen, E.E.7
Xing, H.R.8
Lussier, Y.A.9
-
3
-
-
57149092133
-
Inferring pathway activity toward precise disease classification
-
Lee, E., Chuang, H. Y., Kim, J. W., Ideker, T. And Lee, D. (2008) Inferring pathway activity toward precise disease classification. PLoS Computat. Biol., 4, e1000217.
-
(2008)
PLoS Computat. Biol.
, vol.4
, pp. e1000217
-
-
Lee, E.1
Chuang, H.Y.2
Kim, J.W.3
Ideker, T.4
Lee, D.5
-
4
-
-
84880953958
-
Pathprinting: An integrative approach to understand the functional basis of disease
-
Altschuler, G. M., Hofmann, O., Kalatskaya, I., Payne, R., Sui, S. J. H., Saxena, U., Krivtsov, A. V., Armstrong, S. A., Cai, T. X., Stein, L. et al. (2013) Pathprinting: An integrative approach to understand the functional basis of disease. Genome Med., 5, 68.
-
(2013)
Genome Med.
, vol.5
, pp. 68
-
-
Altschuler, G.M.1
Hofmann, O.2
Kalatskaya, I.3
Payne, R.4
Sui, S.J.H.5
Saxena, U.6
Krivtsov, A.V.7
Armstrong, S.A.8
Cai, T.X.9
Stein, L.10
-
5
-
-
44449102274
-
An integrative approach to characterize disease-specific pathways and their coordination: A case study in cancer
-
Xu, M., Kao, M. C. J., Nunez-Iglesias, J., Nevins, J. R., West, M. And Zhou, X. J. (2008) An integrative approach to characterize disease-specific pathways and their coordination: A case study in cancer. BMC Genomics, 9(Suppl. 1), S12.
-
(2008)
BMC Genomics
, vol.9
, pp. S12
-
-
Xu, M.1
Kao, M.C.J.2
Nunez-Iglesias, J.3
Nevins, J.R.4
West, M.5
Zhou, X.J.6
-
6
-
-
78149460182
-
DEGAS de novo discovery of dysregulated pathways in human diseases
-
Ulitsky, I., Krishnamurthy, A., Karp, R. M. And Shamir, R. (2010) DEGAS de novo discovery of dysregulated pathways in human diseases. PLoS One, 5, e13367.
-
(2010)
PLoS One
, vol.5
, pp. e13367
-
-
Ulitsky, I.1
Krishnamurthy, A.2
Karp, R.M.3
Shamir, R.4
-
7
-
-
41649119247
-
Protein networks in disease
-
Ideker, T. And Sharan, R. (2008) Protein networks in disease. Genome Res., 18, 644-652.
-
(2008)
Genome Res.
, vol.18
, pp. 644-652
-
-
Ideker, T.1
Sharan, R.2
-
8
-
-
84872596110
-
Reuse of public genome-wide gene expression data
-
Rung, J. And Brazma, A. (2013) Reuse of public genome-wide gene expression data. Nat. Rev. Genet., 14, 89-99.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 89-99
-
-
Rung, J.1
Brazma, A.2
-
9
-
-
59149088407
-
Repeatability of published microarray gene expression analyses
-
Ioannidis, J. P., Allison, D. B., Ball, C. A., Coulibaly, I., Cui, X., Culhane, A. C., Falchi, M., Furlanello, C., Game, L., Jurman, G. et al. (2009) Repeatability of published microarray gene expression analyses. Nat. Genet., 41, 149-155.
-
(2009)
Nat. Genet.
, vol.41
, pp. 149-155
-
-
Ioannidis, J.P.1
Allison, D.B.2
Ball, C.A.3
Coulibaly, I.4
Cui, X.5
Culhane, A.C.6
Falchi, M.7
Furlanello, C.8
Game, L.9
Jurman, G.10
-
10
-
-
77951082777
-
Bayesian approach to transforming public gene expression repositories into disease diagnosis databases
-
Huang, H., Liu, C. C. And Zhou, X. J. (2010) Bayesian approach to transforming public gene expression repositories into disease diagnosis databases. Proc. Natl. Acad. Sci. U. S. A., 107, 6823-6828.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 6823-6828
-
-
Huang, H.1
Liu, C.C.2
Zhou, X.J.3
-
11
-
-
0032240835
-
Beyond synonymy: Exploiting the UMLS semantics in mapping vocabularies
-
Bodenreider, O., Nelson, S. J., Hole, W. T. And Chang, H. F. (1998) Beyond synonymy: exploiting the UMLS semantics in mapping vocabularies. Proc. Annu. Symp. AMIA, 815-819.
-
(1998)
Proc. Annu. Symp. AMIA
, pp. 815-819
-
-
Bodenreider, O.1
Nelson, S.J.2
Hole, W.T.3
Chang, H.F.4
-
12
-
-
84859699832
-
Disease Ontology: A backbone for disease semantic integration
-
Schriml, L. M., Arze, C., Nadendla, S., Chang, Y. W., Mazaitis, M., Felix, V., Feng, G. And Kibbe, W. A. (2012) Disease Ontology: A backbone for disease semantic integration. Nucleic Acids Res., 40, D940-D946.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D940-D946
-
-
Schriml, L.M.1
Arze, C.2
Nadendla, S.3
Chang, Y.W.4
Mazaitis, M.5
Felix, V.6
Feng, G.7
Kibbe, W.A.8
-
13
-
-
84859568179
-
Making sense out of massive data by going beyond differential expression
-
Schmid, P. R., Palmer, N. P., Kohane, I. S. And Berger, B. (2012) Making sense out of massive data by going beyond differential expression. Proc. Natl. Acad. Sci. U. S. A., 109, 5594-5599.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 5594-5599
-
-
Schmid, P.R.1
Palmer, N.P.2
Kohane, I.S.3
Berger, B.4
-
14
-
-
84890032753
-
Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies
-
Lee, Y. S., Krishnan, A., Zhu, Q. And Troyanskaya, O. G. (2013) Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies. Bioinformatics, 29, 3036-3044.
-
(2013)
Bioinformatics
, vol.29
, pp. 3036-3044
-
-
Lee, Y.S.1
Krishnan, A.2
Zhu, Q.3
Troyanskaya, O.G.4
-
15
-
-
74649084637
-
SoFoCles: Feature filtering for microarray classification based on gene ontology
-
Papachristoudis, G., Diplaris, S. And Mitkas, P. A. (2010) SoFoCles: feature filtering for microarray classification based on gene ontology. J. Biomed. Inform., 43, 1-14.
-
(2010)
J. Biomed. Inform.
, vol.43
, pp. 1-14
-
-
Papachristoudis, G.1
Diplaris, S.2
Mitkas, P.A.3
-
16
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S. et al. (2005) Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. U. S. A., 102, 15545-15550.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
-
17
-
-
84892385433
-
Current composite-feature classification methods do not outperform simple single-genes classifiers in breast cancer prognosis
-
Staiger, C., Cadot, S., Gyorffy, B., Wessels, L. F. And Klau, G. W. (2013) Current composite-feature classification methods do not outperform simple single-genes classifiers in breast cancer prognosis. Front. Genet., 4, 289.
-
(2013)
Front. Genet.
, vol.4
, pp. 289
-
-
Staiger, C.1
Cadot, S.2
Gyorffy, B.3
Wessels, L.F.4
Klau, G.W.5
-
18
-
-
84884997982
-
Emerging landscape of oncogenic signatures across human cancers
-
Ciriello, G., Miller, M. L., Aksoy, B. A., Senbabaoglu, Y., Schultz, N. And Sander, C. (2013) Emerging landscape of oncogenic signatures across human cancers. Nat. Genet., 45, 1127-U1247.
-
(2013)
Nat. Genet.
, vol.45
, pp. 1127-U1247
-
-
Ciriello, G.1
Miller, M.L.2
Aksoy, B.A.3
Senbabaoglu, Y.4
Schultz, N.5
Sander, C.6
-
19
-
-
33846039701
-
ArrayExpress-a public database of microarray experiments and gene expression profiles
-
Parkinson, H., Kapushesky, M., Shojatalab, M., Abeygunawardena, N., Coulson, R., Farne, A., Holloway, E., Kolesnykov, N., Lilja, P., Lukk, M. et al. (2007) ArrayExpress-a public database of microarray experiments and gene expression profiles. Nucleic Acids Res., 35, D747-D750.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. D747-D750
-
-
Parkinson, H.1
Kapushesky, M.2
Shojatalab, M.3
Abeygunawardena, N.4
Coulson, R.5
Farne, A.6
Holloway, E.7
Kolesnykov, N.8
Lilja, P.9
Lukk, M.10
-
20
-
-
84884994218
-
The Cancer Genome Atlas Pan-Cancer analysis project
-
Cancer Genome Atlas Research Network
-
Cancer Genome Atlas Research Network, Weinstein, J. N., Collisson, E. A., Mills, G. B., Shaw, K. R., Ozenberger, B. A., Ellrott, K., Shmulevich, I., Sander, C. And Stuart, J. M. (2013) The Cancer Genome Atlas Pan-Cancer analysis project. Nat. Genet., 45, 1113-1120.
-
(2013)
Nat. Genet.
, vol.45
, pp. 1113-1120
-
-
Weinstein, J.N.1
Collisson, E.A.2
Mills, G.B.3
Shaw, K.R.4
Ozenberger, B.A.5
Ellrott, K.6
Shmulevich, I.7
Sander, C.8
Stuart, J.M.9
-
21
-
-
33748489754
-
Similarities of ordered gene lists
-
Yang, X., Bentink, S., Scheid, S. And Spang, R. (2006) Similarities of ordered gene lists. J. Bioinform. Computat. Biol., 4, 693-708.
-
(2006)
J. Bioinform. Computat. Biol.
, vol.4
, pp. 693-708
-
-
Yang, X.1
Bentink, S.2
Scheid, S.3
Spang, R.4
-
22
-
-
84897109377
-
A review on multi-label learning algorithms
-
Zhang, M. L. And Zhou, Z. H. (2014) A review on multi-label learning algorithms. IEEE Trans. Knowl. Data En., 26, 1819-1837.
-
(2014)
IEEE Trans. Knowl. Data En.
, vol.26
, pp. 1819-1837
-
-
Zhang, M.L.1
Zhou, Z.H.2
-
23
-
-
80052236046
-
MULAN: A Java library for multi-label learning
-
Tsoumakas, G., Spyromitros-Xioufis, E., Vilcek, J. And Vlahavas, I. (2011) MULAN: A java library for multi-label learning. J. Mach. Learn. Res., 12, 2411-2414.
-
(2011)
J. Mach. Learn. Res.
, vol.12
, pp. 2411-2414
-
-
Tsoumakas, G.1
Spyromitros-Xioufis, E.2
Vilcek, J.3
Vlahavas, I.4
-
24
-
-
84861617363
-
An extensive experimental comparison of methods for multi-label learning
-
Madjarov, G., Kocev, D., Gjorgjevikj, D. And Dzeroski, S. (2012) An extensive experimental comparison of methods for multi-label learning. Pattern Recognit., 45, 3084-3104.
-
(2012)
Pattern Recognit.
, vol.45
, pp. 3084-3104
-
-
Madjarov, G.1
Kocev, D.2
Gjorgjevikj, D.3
Dzeroski, S.4
-
25
-
-
52949141834
-
Decision trees for hierarchical multi-label classification
-
Vens, C., Struyf, J., Schietgat, L., Dzeroski, S. And Blockeel, H. (2008) Decision trees for hierarchical multi-label classification. Mach. Learn., 73, 185-214.
-
(2008)
Mach. Learn.
, vol.73
, pp. 185-214
-
-
Vens, C.1
Struyf, J.2
Schietgat, L.3
Dzeroski, S.4
Blockeel, H.5
-
26
-
-
84897644389
-
Multi-label classification with Bayesian network-based chain classifiers
-
Sucar, L. E., Bielza, C., Morales, E. F., Hernandez-Leal, P., Zaragoza, J. H. And Larranaga, P. (2014) Multi-label classification with Bayesian network-based chain classifiers. Pattern Recognit. Lett., 41, 14-22.
-
(2014)
Pattern Recognit. Lett.
, vol.41
, pp. 14-22
-
-
Sucar, L.E.1
Bielza, C.2
Morales, E.F.3
Hernandez-Leal, P.4
Zaragoza, J.H.5
Larranaga, P.6
-
27
-
-
33645323768
-
Hierarchical multi-label prediction of gene function
-
Barutcuoglu, Z., Schapire, R. E. And Troyanskaya, O. G. (2006) Hierarchical multi-label prediction of gene function. Bioinformatics, 22, 830-836.
-
(2006)
Bioinformatics
, vol.22
, pp. 830-836
-
-
Barutcuoglu, Z.1
Schapire, R.E.2
Troyanskaya, O.G.3
-
28
-
-
51749084180
-
Prior knowledge in support vector kernels
-
Scholkopf, B. S. P., Smola, A. And Vapnik, V. (1998) Prior knowledge in support vector kernels. Advances in Neural information processings systems, 10, 640-646.
-
(1998)
Advances in Neural Information Processings Systems
, vol.10
, pp. 640-646
-
-
Scholkopf, B.S.P.1
Smola, A.2
Vapnik, V.3
-
30
-
-
0035478854
-
Random forests
-
Breiman, L. (2001) Random forests. Mach. Learn., 45, 5-32.
-
(2001)
Mach. Learn.
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
31
-
-
78651330430
-
COSMIC: Mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer
-
Forbes, S. A., Bindal, N., Bamford, S., Cole, C., Kok, C. Y., Beare, D., Jia, M. M., Shepherd, R., Leung, K., Menzies, A. et al. (2011) COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer. Nucleic Acids Res., 39, D945-D950.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D945-D950
-
-
Forbes, S.A.1
Bindal, N.2
Bamford, S.3
Cole, C.4
Kok, C.Y.5
Beare, D.6
Jia, M.M.7
Shepherd, R.8
Leung, K.9
Menzies, A.10
-
32
-
-
84891767304
-
DrugBank 4. 0: Shedding new light on drug metabolism
-
Law, V., Knox, C., Djoumbou, Y., Jewison, T., Guo, A. C., Liu, Y. F., Maciejewski, A., Arndt, D., Wilson, M., Neveu, V. et al. (2014) DrugBank 4. 0: shedding new light on drug metabolism. Nucleic Acids Res., 42, D1091-D1097.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D1091-D1097
-
-
Law, V.1
Knox, C.2
Djoumbou, Y.3
Jewison, T.4
Guo, A.C.5
Liu, Y.F.6
Maciejewski, A.7
Arndt, D.8
Wilson, M.9
Neveu, V.10
-
33
-
-
79551587720
-
Cytoscape 2. 8: New features for data integration and network visualization
-
Smoot, M. E., Ono, K., Ruscheinski, J., Wang, P. L. And Ideker, T. (2011) Cytoscape 2. 8: new features for data integration and network visualization. Bioinformatics, 27, 431-432.
-
(2011)
Bioinformatics
, vol.27
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
Wang, P.L.4
Ideker, T.5
-
34
-
-
84915747630
-
EnhancedGraphics: A Cytoscape app for enhanced node graphics
-
Morris, J. H., Kuchinsky, A., Ferrin, T. E. And Pico, A. R. (2014) enhancedGraphics: A Cytoscape app for enhanced node graphics. F1000Research, 3, 147.
-
(2014)
F1000Research
, vol.3
, pp. 147
-
-
Morris, J.H.1
Kuchinsky, A.2
Ferrin, T.E.3
Pico, A.R.4
-
35
-
-
24044440971
-
BiNGO: A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
-
Maere, S., Heymans, K. And Kuiper, M. (2005) BiNGO: A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics, 21, 3448-3449.
-
(2005)
Bioinformatics
, vol.21
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
36
-
-
78149262301
-
GeneMANIA Cytoscape plugin: Fast gene function predictions on the desktop
-
Montojo, J., Zuberi, K., Rodriguez, H., Kazi, F., Wright, G., Donaldson, S. L., Morris, Q. And Bader, G. D. (2010) GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop. Bioinformatics, 26, 2927-2928.
-
(2010)
Bioinformatics
, vol.26
, pp. 2927-2928
-
-
Montojo, J.1
Zuberi, K.2
Rodriguez, H.3
Kazi, F.4
Wright, G.5
Donaldson, S.L.6
Morris, Q.7
Bader, G.D.8
-
37
-
-
76649122816
-
Expander: From expression microarrays to networks and functions
-
Shamir, R., Ulitsky, I., Maron-Katz, A., Shavit, S., Sagir, D., Linhart, C., Elkon, R., Tanay, A., Sharan, R. And Shiloh, Y. (2010) Expander: from expression microarrays to networks and functions. Nature Protoc., 5, 303-322.
-
(2010)
Nature Protoc.
, vol.5
, pp. 303-322
-
-
Shamir, R.1
Ulitsky, I.2
Maron-Katz, A.3
Shavit, S.4
Sagir, D.5
Linhart, C.6
Elkon, R.7
Tanay, A.8
Sharan, R.9
Shiloh, Y.10
-
39
-
-
33645825183
-
Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer
-
Ein-Dor, L., Zuk, O. And Domany, E. (2006) Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer. Proc. Natl. Acad. Sci. U. S. A., 103, 5923-5928.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 5923-5928
-
-
Ein-Dor, L.1
Zuk, O.2
Domany, E.3
-
40
-
-
79952284127
-
Hallmarks of cancer: The next generation
-
Hanahan, D. AndWeinberg, R. A. (2011) Hallmarks of cancer: the next generation. Cell, 144, 646-674.
-
(2011)
Cell
, vol.144
, pp. 646-674
-
-
Hanahan, D.1
AndWeinberg, R.A.2
-
41
-
-
33846047770
-
IntAct-open source resource for molecular interaction data
-
Kerrien, S., Alam-Faruque, Y., Aranda, B., Bancarz, I., Bridge, A., Derow, C., Dimmer, E., Feuermann, M., Friedrichsen, A., Huntley, R. et al. (2007) IntAct-open source resource for molecular interaction data. Nucleic Acids Res., 35, D561-D565.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. D561-D565
-
-
Kerrien, S.1
Alam-Faruque, Y.2
Aranda, B.3
Bancarz, I.4
Bridge, A.5
Derow, C.6
Dimmer, E.7
Feuermann, M.8
Friedrichsen, A.9
Huntley, R.10
-
42
-
-
68549126922
-
The cytoskeleton and cancer
-
Hall, A. (2009) The cytoskeleton and cancer. Cancer Metast. Rev., 28, 5-14.
-
(2009)
Cancer Metast. Rev.
, vol.28
, pp. 5-14
-
-
Hall, A.1
-
43
-
-
39149127944
-
KIBRA interacts with discoidin domain receptor 1 to modulate collagen-induced signalling
-
Hilton, H. N., Stanford, P. M., Harris, J., Oakes, S. R., Kaplan, W., Daly, R. J. And Ormandy, C. J. (2008) KIBRA interacts with discoidin domain receptor 1 to modulate collagen-induced signalling. BBA-Mol. Cell Res., 1783, 383-393.
-
(2008)
BBA-Mol. Cell Res.
, vol.1783
, pp. 383-393
-
-
Hilton, H.N.1
Stanford, P.M.2
Harris, J.3
Oakes, S.R.4
Kaplan, W.5
Daly, R.J.6
Ormandy, C.J.7
-
44
-
-
78951473449
-
Collagen binding specificity of the discoidin domain receptors: Binding sites on collagens II and III and molecular determinants for collagen IV recognition by DDR1
-
Xu, H., Raynal, N., Stathopoulos, S., Myllyharju, J., Farndale, R. W. And Leitinger, B. (2011) Collagen binding specificity of the discoidin domain receptors: binding sites on collagens II and III and molecular determinants for collagen IV recognition by DDR1. Matrix Biol., 30, 16-26.
-
(2011)
Matrix Biol.
, vol.30
, pp. 16-26
-
-
Xu, H.1
Raynal, N.2
Stathopoulos, S.3
Myllyharju, J.4
Farndale, R.W.5
Leitinger, B.6
-
45
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa, M. And Goto, S. (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res., 28, 27-30.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
46
-
-
78651275182
-
Reactome: A database of reactions, pathways and biological processes
-
Croft, D., O'Kelly, G., Wu, G., Haw, R., Gillespie, M., Matthews, L., Caudy, M., Garapati, P., Gopinath, G., Jassal, B. et al. (2011) Reactome: A database of reactions, pathways and biological processes. Nucleic Acids Res., 39, D691-D697.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D691-D697
-
-
Croft, D.1
O'Kelly, G.2
Wu, G.3
Haw, R.4
Gillespie, M.5
Matthews, L.6
Caudy, M.7
Garapati, P.8
Gopinath, G.9
Jassal, B.10
-
47
-
-
58149186477
-
PID: The pathway interaction database
-
Schaefer, C. F., Anthony, K., Krupa, S., Buchoff, J., Day, M., Hannay, T. And Buetow, K. H. (2009) PID: the Pathway Interaction Database. Nucleic Acids Res., 37, D674-D679.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D674-D679
-
-
Schaefer, C.F.1
Anthony, K.2
Krupa, S.3
Buchoff, J.4
Day, M.5
Hannay, T.6
Buetow, K.H.7
-
48
-
-
31444435104
-
Management of gastrointestinal stromal tumors in the imatinib era: Selected case studies
-
Benjamin, R. S., Blanke, C. D., Blay, J. Y., Bonvalot, S. And Eisenberg, B. (2006) Management of gastrointestinal stromal tumors in the imatinib era: Selected case studies. Oncologist, 11, 9-20.
-
(2006)
Oncologist
, vol.11
, pp. 9-20
-
-
Benjamin, R.S.1
Blanke, C.D.2
Blay, J.Y.3
Bonvalot, S.4
Eisenberg, B.5
-
49
-
-
0035122485
-
Induction of apoptosis in chronic myelogenous leukemia cells through nuclear entrapment of BCR-ABL tyrosine kinase
-
Vigneri, P. And Wang, J. Y. J. (2001) Induction of apoptosis in chronic myelogenous leukemia cells through nuclear entrapment of BCR-ABL tyrosine kinase. Nat. Med., 7, 228-234.
-
(2001)
Nat. Med.
, vol.7
, pp. 228-234
-
-
Vigneri, P.1
Wang, J.Y.J.2
-
50
-
-
0036084258
-
TTD: Therapeutic target database
-
Chen, X., Ji, Z. L. And Chen, Y. Z. (2002) TTD: Therapeutic Target Database. Nucleic Acids Res., 30, 412-415.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 412-415
-
-
Chen, X.1
Ji, Z.L.2
Chen, Y.Z.3
-
51
-
-
75549090848
-
Update of TTD: Therapeutic Target Database
-
Zhu, F., Han, B. C., Kumar, P., Liu, X. H., Ma, X. H., Wei, X. N., Huang, L., Guo, Y. F., Han, L. Y., Zheng, C. J. et al. (2010) Update of TTD: Therapeutic Target Database. Nucleic Acids Res., 38, D787-D791.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. D787-D791
-
-
Zhu, F.1
Han, B.C.2
Kumar, P.3
Liu, X.H.4
Ma, X.H.5
Wei, X.N.6
Huang, L.7
Guo, Y.F.8
Han, L.Y.9
Zheng, C.J.10
-
53
-
-
0022960348
-
The biochemical pharmacology of (2-R)-chloropentostatin, a novel inhibitor of adenosine-deaminase
-
Jackson, R. C., Leopold, W. R. And Ross, D. A. (1986) The biochemical pharmacology of (2-R)-chloropentostatin, a novel inhibitor of adenosine-deaminase. Adv. Enzyme Regul., 25, 125-139.
-
(1986)
Adv. Enzyme Regul.
, vol.25
, pp. 125-139
-
-
Jackson, R.C.1
Leopold, W.R.2
Ross, D.A.3
-
54
-
-
77954760827
-
A genome-wide map of human genetic interactions inferred from radiation hybrid genotypes
-
Lin, A., Wang, R. T., Ahn, S., Park, C. C. And Smith, D. J. (2010) A genome-wide map of human genetic interactions inferred from radiation hybrid genotypes. Genome Res., 20, 1122-1132.
-
(2010)
Genome Res.
, vol.20
, pp. 1122-1132
-
-
Lin, A.1
Wang, R.T.2
Ahn, S.3
Park, C.C.4
Smith, D.J.5
-
55
-
-
78649705725
-
Quantitative analysis of fitness and genetic interactions in yeast on a genome scale
-
Baryshnikova, A., Costanzo, M., Kim, Y., Ding, H. M., Koh, J., Toufighi, K., Youn, J. Y., Ou, J. W., San Luis, B. J., Bandyopadhyay, S. et al. (2010) Quantitative analysis of fitness and genetic interactions in yeast on a genome scale. Nat. Methods, 7, 1017-U1110.
-
(2010)
Nat. Methods
, vol.7
, pp. 1017-U1110
-
-
Baryshnikova, A.1
Costanzo, M.2
Kim, Y.3
Ding, H.M.4
Koh, J.5
Toufighi, K.6
Youn, J.Y.7
Ou, J.W.8
San Luis, B.J.9
Bandyopadhyay, S.10
-
56
-
-
59449106920
-
Expression and 1, 4-dihydropyridine-binding properties of brain L-type calcium channel isoforms
-
Sinnegger-Brauns, M. J., Huber, I. G., Koschak, A., Wild, C., Obermair, G. J., Einzinger, U., Hoda, J. C., Sartori, S. B. And Striessnig, J. (2009) Expression and 1, 4-dihydropyridine-binding properties of brain L-type calcium channel isoforms. Mol. Pharmacol., 75, 407-414.
-
(2009)
Mol. Pharmacol.
, vol.75
, pp. 407-414
-
-
Sinnegger-Brauns, M.J.1
Huber, I.G.2
Koschak, A.3
Wild, C.4
Obermair, G.J.5
Einzinger, U.6
Hoda, J.C.7
Sartori, S.B.8
Striessnig, J.9
-
57
-
-
84891780319
-
The Gene Expression Barcode 3. 0: Improved data processing and mining tools
-
McCall, M. N., Jaffee, H. A., Zelisko, S. J., Sinha, N., Hooiveld, G., Irizarry, R. A. And Zilliox, M. J. (2014) The Gene Expression Barcode 3. 0: improved data processing and mining tools. Nucleic Acids Res., 42, D938-D943.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D938-D943
-
-
McCall, M.N.1
Jaffee, H.A.2
Zelisko, S.J.3
Sinha, N.4
Hooiveld, G.5
Irizarry, R.A.6
Zilliox, M.J.7
-
58
-
-
84887044836
-
Multiplatform single-sample estimates of transcriptional activation
-
Piccolo, S. R., Withers, M. R., Francis, O. E., Bild, A. H. And Johnson, W. E. (2013) Multiplatform single-sample estimates of transcriptional activation. Proc. Natl. Acad. Sci. U. S. A., 110, 17778-17783.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 17778-17783
-
-
Piccolo, S.R.1
Withers, M.R.2
Francis, O.E.3
Bild, A.H.4
Johnson, W.E.5
-
59
-
-
35348891430
-
Network-based classification of breast cancer metastasis
-
Chuang, H. Y., Lee, E., Liu, Y. T., Lee, D. And Ideker, T. (2007) Network-based classification of breast cancer metastasis. Mol. Syst. Biol., 3, 140.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 140
-
-
Chuang, H.Y.1
Lee, E.2
Liu, Y.T.3
Lee, D.4
Ideker, T.5
-
60
-
-
77955654135
-
Expectations, validity, and reality in gene expression profiling
-
Kim, K., Zakharkin, S. O. And Allison, D. B. (2010) Expectations, validity, and reality in gene expression profiling. J. Clin. Epidemiol., 63, 950-959.
-
(2010)
J. Clin. Epidemiol.
, vol.63
, pp. 950-959
-
-
Kim, K.1
Zakharkin, S.O.2
Allison, D.B.3
-
61
-
-
13444282534
-
-
Ein-Dor, L., Kela, I., Getz, G., Givol, D. And Domany, E. (2005) Outcome signature genes in breast cancer: is there a unique set? Bioinformatics, 21, 171-178.
-
(2005)
Outcome signature genes in breast cancer: Is there a unique set? Bioinformatics
, vol.21
, pp. 171-178
-
-
Ein-Dor, L.1
Kela, I.2
Getz, G.3
Givol, D.4
Domany, E.5
-
62
-
-
13444249852
-
Prediction of cancer outcome with microarrays: A multiple random validation strategy
-
Michiels, S., Koscielny, S. And Hill, C. (2005) Prediction of cancer outcome with microarrays: A multiple random validation strategy. Lancet, 365, 488-492.
-
(2005)
Lancet
, vol.365
, pp. 488-492
-
-
Michiels, S.1
Koscielny, S.2
Hill, C.3
|