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Volumn 43, Issue 12, 2015, Pages

Post-conversion targeted capture of modified cytosines in mammalian and plant genomes

Author keywords

[No Author keywords available]

Indexed keywords

5 HYDROXYMETHYLCYTOSINE; 5 METHYLCYTOSINE; BISULFITE; DINUCLEOTIDE; 5-HYDROXYMETHYLCYTOSINE; CYTOSINE; HYDROGEN SULFITE; SULFITE;

EID: 84942244533     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv244     Document Type: Article
Times cited : (51)

References (116)
  • 1
    • 84875883306 scopus 로고    scopus 로고
    • UHRF1 targets DNMT1 for DNA methylation through cooperative binding of hemi-methylated DNA and methylated H3K9
    • Liu, X., Gao, Q., Li, P., Zhao, Q., Zhang, J., Li, J., Koseki, H. and Wong, J. (2013) UHRF1 targets DNMT1 for DNA methylation through cooperative binding of hemi-methylated DNA and methylated H3K9. Nat. Commun., 4, 1563.
    • (2013) Nat. Commun. , vol.4 , pp. 1563
    • Liu, X.1    Gao, Q.2    Li, P.3    Zhao, Q.4    Zhang, J.5    Li, J.6    Koseki, H.7    Wong, J.8
  • 6
    • 84857331867 scopus 로고    scopus 로고
    • Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome
    • Xie, W., Barr, C.L., Kim, A., Yue, F., Lee, A.Y., Eubanks, J., Dempster, E.L. and Ren, B. (2012) Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome. Cell, 148, 816-831.
    • (2012) Cell , vol.148 , pp. 816-831
    • Xie, W.1    Barr, C.L.2    Kim, A.3    Yue, F.4    Lee, A.Y.5    Eubanks, J.6    Dempster, E.L.7    Ren, B.8
  • 8
    • 84893740377 scopus 로고    scopus 로고
    • Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain
    • Guo, J.U., Su, Y., Shin, J.H., Shin, J., Li, H., Xie, B., Zhong, C., Hu, S., Le, T., Fan, G. et al. (2014) Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain. Nat. Neurosci., 17, 215-222.
    • (2014) Nat. Neurosci. , vol.17 , pp. 215-222
    • Guo, J.U.1    Su, Y.2    Shin, J.H.3    Shin, J.4    Li, H.5    Xie, B.6    Zhong, C.7    Hu, S.8    Le, T.9    Fan, G.10
  • 11
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • Law, J.A. and Jacobsen, S.E. (2010) Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet., 11, 204-220.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 12
    • 84876343136 scopus 로고    scopus 로고
    • Functions of DNA methylation and hydroxymethylation in mammalian development
    • Guibert, S. and Weber, M. (2013) Functions of DNA methylation and hydroxymethylation in mammalian development. Curr. Top. Dev. Biol., 104, 47-83.
    • (2013) Curr. Top. Dev. Biol. , vol.104 , pp. 47-83
    • Guibert, S.1    Weber, M.2
  • 13
    • 84859087611 scopus 로고    scopus 로고
    • R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters
    • Ginno, P.A., Lott, P.L., Christensen, H.C., Korf, I. and Chedin, F. (2012) R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters. Mol. Cell, 45, 814-825.
    • (2012) Mol. Cell , vol.45 , pp. 814-825
    • Ginno, P.A.1    Lott, P.L.2    Christensen, H.C.3    Korf, I.4    Chedin, F.5
  • 14
    • 33845880624 scopus 로고    scopus 로고
    • Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
    • Zilberman, D., Gehring, M., Tran, R.K., Ballinger, T. and Henikoff, S. (2007) Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat. Genet., 39, 61-69.
    • (2007) Nat. Genet. , vol.39 , pp. 61-69
    • Zilberman, D.1    Gehring, M.2    Tran, R.K.3    Ballinger, T.4    Henikoff, S.5
  • 16
    • 79960556965 scopus 로고    scopus 로고
    • Epigenome-wide association studies for common human diseases
    • Rakyan, V.K., Down, T.A., Balding, D.J. and Beck, S. (2011) Epigenome-wide association studies for common human diseases. Nat. Rev. Genet., 12, 529-541.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 529-541
    • Rakyan, V.K.1    Down, T.A.2    Balding, D.J.3    Beck, S.4
  • 21
    • 77950527721 scopus 로고    scopus 로고
    • Optimized design and data analysis of tag-based cytosine methylation assays
    • Suzuki, M., Jing, Q., Lia, D., Pascual, M., McLellan, A. and Greally, J.M. (2010) Optimized design and data analysis of tag-based cytosine methylation assays. Genome Biol., 11, R36.
    • (2010) Genome Biol. , vol.11 , pp. R36
    • Suzuki, M.1    Jing, Q.2    Lia, D.3    Pascual, M.4    McLellan, A.5    Greally, J.M.6
  • 22
  • 25
    • 84861221693 scopus 로고    scopus 로고
    • Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution
    • Booth, M.J., Branco, M.R., Ficz, G., Oxley, D., Krueger, F., Reik, W. and Balasubramanian, S. (2012) Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution. Science, 336, 934-937.
    • (2012) Science , vol.336 , pp. 934-937
    • Booth, M.J.1    Branco, M.R.2    Ficz, G.3    Oxley, D.4    Krueger, F.5    Reik, W.6    Balasubramanian, S.7
  • 26
    • 84874816208 scopus 로고    scopus 로고
    • DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes
    • Aran, D., Sabato, S. and Hellman, A. (2013) DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes. Genome Biol., 14, R21.
    • (2013) Genome Biol. , vol.14 , pp. R21
    • Aran, D.1    Sabato, S.2    Hellman, A.3
  • 28
    • 84884935122 scopus 로고    scopus 로고
    • Widespread DNA hypomethylation at gene enhancer regions in placentas associated with early-onset pre-eclampsia
    • Blair, J.D., Yuen, R.K., Lim, B.K., McFadden, D.E., von Dadelszen, P. and Robinson, W.P. (2013) Widespread DNA hypomethylation at gene enhancer regions in placentas associated with early-onset pre-eclampsia. Mol. Hum. Reprod., 19, 697-708.
    • (2013) Mol. Hum. Reprod. , vol.19 , pp. 697-708
    • Blair, J.D.1    Yuen, R.K.2    Lim, B.K.3    McFadden, D.E.4    Von Dadelszen, P.5    Robinson, W.P.6
  • 29
    • 84908153718 scopus 로고    scopus 로고
    • Comparative DNA methylome analysis of endometrial carcinoma reveals complex and distinct deregulation of cancer promoters and enhancers
    • Zhang, B., Xing, X., Li, J., Lowdon, R.F., Zhou, Y., Lin, N., Zhang, B., Sundaram, V., Chiappinelli, K.B., Hagemann, I.S. et al. (2014) Comparative DNA methylome analysis of endometrial carcinoma reveals complex and distinct deregulation of cancer promoters and enhancers. BMC Genomics, 15, 868.
    • (2014) BMC Genomics , vol.15 , pp. 868
    • Zhang, B.1    Xing, X.2    Li, J.3    Lowdon, R.F.4    Zhou, Y.5    Lin, N.6    Zhang, B.7    Sundaram, V.8    Chiappinelli, K.B.9    Hagemann, I.S.10
  • 30
    • 84907196865 scopus 로고    scopus 로고
    • Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer
    • Taberlay, P.C., Statham, A.L., Kelly, T.K., Clark, S.J. and Jones, P.A. (2014) Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer. Genome Res., 24, 1421-1432.
    • (2014) Genome Res. , vol.24 , pp. 1421-1432
    • Taberlay, P.C.1    Statham, A.L.2    Kelly, T.K.3    Clark, S.J.4    Jones, P.A.5
  • 33
    • 84857707318 scopus 로고    scopus 로고
    • ChromHMM: Automating chromatin-state discovery and characterization
    • Ernst, J. and Kellis, M. (2012) ChromHMM: automating chromatin-state discovery and characterization. Nat. Methods, 9, 215-216.
    • (2012) Nat. Methods , vol.9 , pp. 215-216
    • Ernst, J.1    Kellis, M.2
  • 38
    • 34247113143 scopus 로고    scopus 로고
    • A new method for accurate assessment of DNA quality after bisulfite treatment
    • Ehrich, M., Zoll, S., Sur, S. and van den Boom, D. (2007) A new method for accurate assessment of DNA quality after bisulfite treatment. Nucleic Acids Res., 35, e29.
    • (2007) Nucleic Acids Res. , vol.35 , pp. e29
    • Ehrich, M.1    Zoll, S.2    Sur, S.3    Van Den Boom, D.4
  • 41
  • 43
    • 68949141599 scopus 로고    scopus 로고
    • BSMAP: Whole genome bisulfite sequence MAPping program
    • Xi, Y. and Li, W. (2009) BSMAP: whole genome bisulfite sequence MAPping program. BMC Bioinform., 10, 232.
    • (2009) BMC Bioinform. , vol.10 , pp. 232
    • Xi, Y.1    Li, W.2
  • 44
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications
    • Krueger, F. and Andrews, S.R. (2011) Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics, 27, 1571-1572.
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Krueger, F.1    Andrews, S.R.2
  • 45
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A.R. and Hall, I.M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 47
    • 84863565553 scopus 로고    scopus 로고
    • Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data
    • Liu, Y., Siegmund, K.D., Laird, P.W. and Berman, B.P. (2012) Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data. Genome Biol., 13, R61.
    • (2012) Genome Biol. , vol.13 , pp. R61
    • Liu, Y.1    Siegmund, K.D.2    Laird, P.W.3    Berman, B.P.4
  • 50
    • 84863565553 scopus 로고    scopus 로고
    • Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data
    • Liu, Y., Siegmund, K.D., Laird, P.W. and Berman, B.P. (2012) Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data. Genome Biol., 13, R61.
    • (2012) Genome Biol. , vol.13 , pp. R61
    • Liu, Y.1    Siegmund, K.D.2    Laird, P.W.3    Berman, B.P.4
  • 51
    • 84921057657 scopus 로고    scopus 로고
    • Advances in the profiling of DNA modifications: Cytosine methylation and beyond
    • Plongthongkum, N., Diep, D.H. and Zhang, K. (2014) Advances in the profiling of DNA modifications: cytosine methylation and beyond. Nat. Rev. Genet., 15, 647-661.
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 647-661
    • Plongthongkum, N.1    Diep, D.H.2    Zhang, K.3
  • 52
    • 0023150598 scopus 로고
    • HPRT-deficient (Lesch-Nyhan) mouse embryos derived from germline colonization by cultured cells
    • Hooper, M., Hardy, K., Handyside, A., Hunter, S. and Monk, M. (1987) HPRT-deficient (Lesch-Nyhan) mouse embryos derived from germline colonization by cultured cells. Nature, 326, 292-295.
    • (1987) Nature , vol.326 , pp. 292-295
    • Hooper, M.1    Hardy, K.2    Handyside, A.3    Hunter, S.4    Monk, M.5
  • 54
    • 84899091504 scopus 로고    scopus 로고
    • Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain
    • Wen, L., Li, X., Yan, L., Tan, Y., Li, R., Zhao, Y., Wang, Y., Xie, J., Zhang, Y., Song, C. et al. (2014) Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain. Genome Biol., 15, R49.
    • (2014) Genome Biol. , vol.15 , pp. R49
    • Wen, L.1    Li, X.2    Yan, L.3    Tan, Y.4    Li, R.5    Zhao, Y.6    Wang, Y.7    Xie, J.8    Zhang, Y.9    Song, C.10
  • 55
    • 84890172667 scopus 로고    scopus 로고
    • Global analysis of DNA methylation variation in adipose tissue from twins reveals links to disease-associated variants in distal regulatory elements
    • Grundberg, E., Meduri, E., Sandling, J.K., Hedman, A.K., Keildson, S., Buil, A., Busche, S., Yuan, W., Nisbet, J., Sekowska, M. et al. (2013) Global analysis of DNA methylation variation in adipose tissue from twins reveals links to disease-associated variants in distal regulatory elements. Am. J. Hum. Genet., 93, 876-890.
    • (2013) Am. J. Hum. Genet. , vol.93 , pp. 876-890
    • Grundberg, E.1    Meduri, E.2    Sandling, J.K.3    Hedman, A.K.4    Keildson, S.5    Buil, A.6    Busche, S.7    Yuan, W.8    Nisbet, J.9    Sekowska, M.10
  • 58
    • 0019198357 scopus 로고
    • Mutagenic deamination of cytosine residues in DNA
    • Duncan, B.K. and Miller, J.H. (1980) Mutagenic deamination of cytosine residues in DNA. Nature, 287, 560-561.
    • (1980) Nature , vol.287 , pp. 560-561
    • Duncan, B.K.1    Miller, J.H.2
  • 59
    • 84875883306 scopus 로고    scopus 로고
    • UHRF1 targets DNMT1 for DNA methylation through cooperative binding of hemi-methylated DNA and methylated H3K9
    • Liu, X., Gao, Q., Li, P., Zhao, Q., Zhang, J., Li, J., Koseki, H. and Wong, J. (2013) UHRF1 targets DNMT1 for DNA methylation through cooperative binding of hemi-methylated DNA and methylated H3K9. Nat. Commun., 4, 1563.
    • (2013) Nat. Commun. , vol.4 , pp. 1563
    • Liu, X.1    Gao, Q.2    Li, P.3    Zhao, Q.4    Zhang, J.5    Li, J.6    Koseki, H.7    Wong, J.8
  • 64
    • 84857331867 scopus 로고    scopus 로고
    • Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome
    • Xie, W., Barr, C.L., Kim, A., Yue, F., Lee, A.Y., Eubanks, J., Dempster, E.L. and Ren, B. (2012) Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome. Cell, 148, 816-831.
    • (2012) Cell , vol.148 , pp. 816-831
    • Xie, W.1    Barr, C.L.2    Kim, A.3    Yue, F.4    Lee, A.Y.5    Eubanks, J.6    Dempster, E.L.7    Ren, B.8
  • 66
    • 84893740377 scopus 로고    scopus 로고
    • Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain
    • Guo, J.U., Su, Y., Shin, J.H., Shin, J., Li, H., Xie, B., Zhong, C., Hu, S., Le, T., Fan, G. et al. (2014) Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain. Nat. Neurosci., 17, 215-222.
    • (2014) Nat. Neurosci. , vol.17 , pp. 215-222
    • Guo, J.U.1    Su, Y.2    Shin, J.H.3    Shin, J.4    Li, H.5    Xie, B.6    Zhong, C.7    Hu, S.8    Le, T.9    Fan, G.10
  • 69
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • Law, J.A. and Jacobsen, S.E. (2010) Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet., 11, 204-220.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 70
    • 84876343136 scopus 로고    scopus 로고
    • Functions of DNA methylation and hydroxymethylation in mammalian development
    • Guibert, S. and Weber, M. (2013) Functions of DNA methylation and hydroxymethylation in mammalian development. Curr. Top. Dev. Biol., 104, 47-83.
    • (2013) Curr. Top. Dev. Biol. , vol.104 , pp. 47-83
    • Guibert, S.1    Weber, M.2
  • 71
    • 84859087611 scopus 로고    scopus 로고
    • R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters
    • Ginno, P.A., Lott, P.L., Christensen, H.C., Korf, I. and Chedin, F. (2012) R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters. Mol. Cell, 45, 814-825.
    • (2012) Mol. Cell , vol.45 , pp. 814-825
    • Ginno, P.A.1    Lott, P.L.2    Christensen, H.C.3    Korf, I.4    Chedin, F.5
  • 72
    • 33845880624 scopus 로고    scopus 로고
    • Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
    • Zilberman, D., Gehring, M., Tran, R.K., Ballinger, T. and Henikoff, S. (2007) Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat. Genet., 39, 61-69.
    • (2007) Nat. Genet. , vol.39 , pp. 61-69
    • Zilberman, D.1    Gehring, M.2    Tran, R.K.3    Ballinger, T.4    Henikoff, S.5
  • 74
    • 79960556965 scopus 로고    scopus 로고
    • Epigenome-wide association studies for common human diseases
    • Rakyan, V.K., Down, T.A., Balding, D.J. and Beck, S. (2011) Epigenome-wide association studies for common human diseases. Nat. Rev. Genet., 12, 529-541.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 529-541
    • Rakyan, V.K.1    Down, T.A.2    Balding, D.J.3    Beck, S.4
  • 79
    • 77950527721 scopus 로고    scopus 로고
    • Optimized design and data analysis of tag-based cytosine methylation assays
    • Suzuki, M., Jing, Q., Lia, D., Pascual, M., McLellan, A. and Greally, J.M. (2010) Optimized design and data analysis of tag-based cytosine methylation assays. Genome Biol., 11, R36.
    • (2010) Genome Biol. , vol.11 , pp. R36
    • Suzuki, M.1    Jing, Q.2    Lia, D.3    Pascual, M.4    McLellan, A.5    Greally, J.M.6
  • 80
  • 83
    • 84861221693 scopus 로고    scopus 로고
    • Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution
    • Booth, M.J., Branco, M.R., Ficz, G., Oxley, D., Krueger, F., Reik, W. and Balasubramanian, S. (2012) Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution. Science, 336, 934-937.
    • (2012) Science , vol.336 , pp. 934-937
    • Booth, M.J.1    Branco, M.R.2    Ficz, G.3    Oxley, D.4    Krueger, F.5    Reik, W.6    Balasubramanian, S.7
  • 84
    • 84874816208 scopus 로고    scopus 로고
    • DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes
    • Aran, D., Sabato, S. and Hellman, A. (2013) DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes. Genome Biol., 14, R21.
    • (2013) Genome Biol. , vol.14 , pp. R21
    • Aran, D.1    Sabato, S.2    Hellman, A.3
  • 86
    • 84884935122 scopus 로고    scopus 로고
    • Widespread DNA hypomethylation at gene enhancer regions in placentas associated with early-onset pre-eclampsia
    • Blair, J.D., Yuen, R.K., Lim, B.K., McFadden, D.E., von Dadelszen, P. and Robinson, W.P. (2013) Widespread DNA hypomethylation at gene enhancer regions in placentas associated with early-onset pre-eclampsia. Mol. Hum. Reprod., 19, 697-708.
    • (2013) Mol. Hum. Reprod. , vol.19 , pp. 697-708
    • Blair, J.D.1    Yuen, R.K.2    Lim, B.K.3    McFadden, D.E.4    Von Dadelszen, P.5    Robinson, W.P.6
  • 87
    • 84908153718 scopus 로고    scopus 로고
    • Comparative DNA methylome analysis of endometrial carcinoma reveals complex and distinct deregulation of cancer promoters and enhancers
    • Zhang, B., Xing, X., Li, J., Lowdon, R.F., Zhou, Y., Lin, N., Zhang, B., Sundaram, V., Chiappinelli, K.B., Hagemann, I.S. et al. (2014) Comparative DNA methylome analysis of endometrial carcinoma reveals complex and distinct deregulation of cancer promoters and enhancers. BMC Genomics, 15, 868.
    • (2014) BMC Genomics , vol.15 , pp. 868
    • Zhang, B.1    Xing, X.2    Li, J.3    Lowdon, R.F.4    Zhou, Y.5    Lin, N.6    Zhang, B.7    Sundaram, V.8    Chiappinelli, K.B.9    Hagemann, I.S.10
  • 88
    • 84907196865 scopus 로고    scopus 로고
    • Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer
    • Taberlay, P.C., Statham, A.L., Kelly, T.K., Clark, S.J. and Jones, P.A. (2014) Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer. Genome Res., 24, 1421-1432.
    • (2014) Genome Res. , vol.24 , pp. 1421-1432
    • Taberlay, P.C.1    Statham, A.L.2    Kelly, T.K.3    Clark, S.J.4    Jones, P.A.5
  • 91
    • 84857707318 scopus 로고    scopus 로고
    • ChromHMM: Automating chromatin-state discovery and characterization
    • Ernst, J. and Kellis, M. (2012) ChromHMM: automating chromatin-state discovery and characterization. Nat. Methods, 9, 215-216.
    • (2012) Nat. Methods , vol.9 , pp. 215-216
    • Ernst, J.1    Kellis, M.2
  • 96
    • 34247113143 scopus 로고    scopus 로고
    • A new method for accurate assessment of DNA quality after bisulfite treatment
    • Ehrich, M., Zoll, S., Sur, S. and van den Boom, D. (2007) A new method for accurate assessment of DNA quality after bisulfite treatment. Nucleic Acids Res., 35, e29.
    • (2007) Nucleic Acids Res. , vol.35 , pp. e29
    • Ehrich, M.1    Zoll, S.2    Sur, S.3    Van Den Boom, D.4
  • 99
  • 101
    • 68949141599 scopus 로고    scopus 로고
    • BSMAP: Whole genome bisulfite sequence MAPping program
    • Xi, Y. and Li, W. (2009) BSMAP: whole genome bisulfite sequence MAPping program. BMC Bioinform., 10, 232.
    • (2009) BMC Bioinform. , vol.10 , pp. 232
    • Xi, Y.1    Li, W.2
  • 102
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications
    • Krueger, F. and Andrews, S.R. (2011) Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics, 27, 1571-1572.
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Krueger, F.1    Andrews, S.R.2
  • 103
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A.R. and Hall, I.M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 105
    • 84863565553 scopus 로고    scopus 로고
    • Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data
    • Liu, Y., Siegmund, K.D., Laird, P.W. and Berman, B.P. (2012) Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data. Genome Biol., 13, R61.
    • (2012) Genome Biol. , vol.13 , pp. R61
    • Liu, Y.1    Siegmund, K.D.2    Laird, P.W.3    Berman, B.P.4
  • 108
    • 84863565553 scopus 로고    scopus 로고
    • Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data
    • Liu, Y., Siegmund, K.D., Laird, P.W. and Berman, B.P. (2012) Bis-SNP: Combined DNA methylation and SNP calling for Bisulfite-seq data. Genome Biol., 13, R61.
    • (2012) Genome Biol. , vol.13 , pp. R61
    • Liu, Y.1    Siegmund, K.D.2    Laird, P.W.3    Berman, B.P.4
  • 109
    • 84921057657 scopus 로고    scopus 로고
    • Advances in the profiling of DNA modifications: Cytosine methylation and beyond
    • Plongthongkum, N., Diep, D.H. and Zhang, K. (2014) Advances in the profiling of DNA modifications: cytosine methylation and beyond. Nat. Rev. Genet., 15, 647-661.
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 647-661
    • Plongthongkum, N.1    Diep, D.H.2    Zhang, K.3
  • 110
    • 0023150598 scopus 로고
    • HPRT-deficient (Lesch-Nyhan) mouse embryos derived from germline colonization by cultured cells
    • Hooper, M., Hardy, K., Handyside, A., Hunter, S. and Monk, M. (1987) HPRT-deficient (Lesch-Nyhan) mouse embryos derived from germline colonization by cultured cells. Nature, 326, 292-295.
    • (1987) Nature , vol.326 , pp. 292-295
    • Hooper, M.1    Hardy, K.2    Handyside, A.3    Hunter, S.4    Monk, M.5
  • 112
    • 84899091504 scopus 로고    scopus 로고
    • Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain
    • Wen, L., Li, X., Yan, L., Tan, Y., Li, R., Zhao, Y., Wang, Y., Xie, J., Zhang, Y., Song, C. et al. (2014) Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain. Genome Biol., 15, R49.
    • (2014) Genome Biol. , vol.15 , pp. R49
    • Wen, L.1    Li, X.2    Yan, L.3    Tan, Y.4    Li, R.5    Zhao, Y.6    Wang, Y.7    Xie, J.8    Zhang, Y.9    Song, C.10
  • 113
    • 84890172667 scopus 로고    scopus 로고
    • Global analysis of DNA methylation variation in adipose tissue from twins reveals links to disease-associated variants in distal regulatory elements
    • Grundberg, E., Meduri, E., Sandling, J.K., Hedman, A.K., Keildson, S., Buil, A., Busche, S., Yuan, W., Nisbet, J., Sekowska, M. et al. (2013) Global analysis of DNA methylation variation in adipose tissue from twins reveals links to disease-associated variants in distal regulatory elements. Am. J. Hum. Genet., 93, 876-890.
    • (2013) Am. J. Hum. Genet. , vol.93 , pp. 876-890
    • Grundberg, E.1    Meduri, E.2    Sandling, J.K.3    Hedman, A.K.4    Keildson, S.5    Buil, A.6    Busche, S.7    Yuan, W.8    Nisbet, J.9    Sekowska, M.10
  • 116
    • 0019198357 scopus 로고
    • Mutagenic deamination of cytosine residues in DNA
    • Duncan, B.K. and Miller, J.H. (1980) Mutagenic deamination of cytosine residues in DNA. Nature, 287, 560-561.
    • (1980) Nature , vol.287 , pp. 560-561
    • Duncan, B.K.1    Miller, J.H.2


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