-
1
-
-
60149103624
-
Epigenetic mechanisms in mammals
-
Kim,J.K., Samaranayake,M. and Pradhan,S. (2009) Epigenetic mechanisms in mammals. Cell Mol. Life Sci., 66, 596-612.
-
(2009)
Cell Mol. Life Sci.
, vol.66
, pp. 596-612
-
-
Kim, J.K.1
Samaranayake, M.2
Pradhan, S.3
-
2
-
-
67349255210
-
CpG islands-'a rough guide'
-
Illingworth,R.S. and Bird,A.P. (2009) CpG islands-'a rough guide'. FEBS Lett., 583, 1713-1720.
-
(2009)
FEBS Lett.
, vol.583
, pp. 1713-1720
-
-
Illingworth, R.S.1
Bird, A.P.2
-
3
-
-
66149147557
-
Developmental programming of CpG island methylation profiles in the human genome
-
Straussman,R., Nejman,D., Roberts,D., Steinfeld,I., Blum,B., Benvenisty,N., Simon,I., Yakhini,Z. and Cedar,H. (2009) Developmental programming of CpG island methylation profiles in the human genome. Nat. Struct. Mol. Biol., 16, 564-571.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 564-571
-
-
Straussman, R.1
Nejman, D.2
Roberts, D.3
Steinfeld, I.4
Blum, B.5
Benvenisty, N.6
Simon, I.7
Yakhini, Z.8
Cedar, H.9
-
4
-
-
33646267956
-
Methyl binding domain protein 2 mediates gamma-globin gene silencing in adult human betaYAC transgenic mice
-
Rupon,J.W., Wang,S.Z., Gaensler,K., Lloyd,J. and Ginder,G.D. (2006) Methyl binding domain protein 2 mediates gamma-globin gene silencing in adult human betaYAC transgenic mice. Proc. Natl. Acad. Sci. U.S.A., 103, 6617-6622.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 6617-6622
-
-
Rupon, J.W.1
Wang, S.Z.2
Gaensler, K.3
Lloyd, J.4
Ginder, G.D.5
-
5
-
-
33749465873
-
MBD2 is a critical component of a methyl cytosine-binding protein complex isolated from primary erythroid cells
-
Kransdorf,E.P., Wang,S.Z., Zhu,S.Z., Langston,T.B., Rupon,J.W. and Ginder,G.D. (2006) MBD2 is a critical component of a methyl cytosine-binding protein complex isolated from primary erythroid cells. Blood, 108, 2836-2845.
-
(2006)
Blood
, vol.108
, pp. 2836-2845
-
-
Kransdorf, E.P.1
Wang, S.Z.2
Zhu, S.Z.3
Langston, T.B.4
Rupon, J.W.5
Ginder, G.D.6
-
6
-
-
34347328214
-
MBD2 is required for correct spatial gene expression in the gut
-
Berger,J., Sansom,O., Clarke,A. and Bird,A. (2007) MBD2 is required for correct spatial gene expression in the gut. Mol. Cell. Biol., 27, 4049-4057.
-
(2007)
Mol. Cell. Biol.
, vol.27
, pp. 4049-4057
-
-
Berger, J.1
Sansom, O.2
Clarke, A.3
Bird, A.4
-
7
-
-
33847065486
-
The epigenomics of cancer
-
Jones,P.A. and Baylin,S.B. (2007) The epigenomics of cancer. Cell, 128, 683-692.
-
(2007)
Cell
, vol.128
, pp. 683-692
-
-
Jones, P.A.1
Baylin, S.B.2
-
8
-
-
0024342686
-
Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs
-
Meehan,R.R., Lewis,J.D., McKay,S., Kleiner,E.L. and Bird,A.P. (1989) Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs. Cell, 58, 499-507.
-
(1989)
Cell
, vol.58
, pp. 499-507
-
-
Meehan, R.R.1
Lewis, J.D.2
McKay, S.3
Kleiner, E.L.4
Bird, A.P.5
-
9
-
-
0031792779
-
Identification and characterization of a family of mammalian methyl-CpG binding proteins
-
Hendrich,B. and Bird,A. (1998) Identification and characterization of a family of mammalian methyl-CpG binding proteins. Mol. Cell. Biol., 18, 6538-6547.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 6538-6547
-
-
Hendrich, B.1
Bird, A.2
-
10
-
-
84892634662
-
Probing the dynamic distribution of bound states for methylcytosine-binding domains on DNA
-
Cramer,J.M., Scarsdale,J.N., Walavalkar,N.M., Buchwald,W.A., Ginder,G.D. and Williams,D.C. Jr (2014) Probing the dynamic distribution of bound states for methylcytosine-binding domains on DNA. J. Biol. Chem., 289, 1294-1302.
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 1294-1302
-
-
Cramer, J.M.1
Scarsdale, J.N.2
Walavalkar, N.M.3
Buchwald, W.A.4
Ginder, G.D.5
Williams, D.C.6
-
11
-
-
84860221291
-
Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation
-
Hashimoto,H., Liu,Y., Upadhyay,A.K., Chang,Y., Howerton,S.B., Vertino,P.M., Zhang,X. and Cheng,X. (2012) Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation. Nucleic Acids Res., 40, 4841-4849.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4841-4849
-
-
Hashimoto, H.1
Liu, Y.2
Upadhyay, A.K.3
Chang, Y.4
Howerton, S.B.5
Vertino, P.M.6
Zhang, X.7
Cheng, X.8
-
12
-
-
0037144441
-
The mCpG-binding domain of human MBD3 does not bind to mCpG but interacts with NuRD/Mi2 components HDAC1 and MTA2
-
Saito,M. and Ishikawa,F. (2002) The mCpG-binding domain of human MBD3 does not bind to mCpG but interacts with NuRD/Mi2 components HDAC1 and MTA2. J. Biol. Chem., 277, 35434-35439.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 35434-35439
-
-
Saito, M.1
Ishikawa, F.2
-
13
-
-
0037444026
-
The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties
-
Fraga,M.F., Ballestar,E., Montoya,G., Taysavang,P., Wade,P.A. and Esteller,M. (2003) The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties. Nucleic Acids Res., 31, 1765-1774.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1765-1774
-
-
Fraga, M.F.1
Ballestar, E.2
Montoya, G.3
Taysavang, P.4
Wade, P.A.5
Esteller, M.6
-
14
-
-
0035312289
-
The MeCP1 complex represses transcription through preferential binding, remodeling, and deacetylating methylated nucleosomes
-
Feng,Q. and Zhang,Y. (2001) The MeCP1 complex represses transcription through preferential binding, remodeling, and deacetylating methylated nucleosomes. Genes Dev., 15, 827-832.
-
(2001)
Genes Dev.
, vol.15
, pp. 827-832
-
-
Feng, Q.1
Zhang, Y.2
-
15
-
-
84928579688
-
Towards elucidating the stability, dynamics and architecture of the nucleosome remodeling and deacetylase complex by using quantitative interaction proteomics
-
Kloet,S.L., Baymaz,H.I., Makowski,M., Groenewold,V., Jansen,P.W., Berendsen,M., Niazi,H., Kops,G.J. and Vermeulen,M. (2014) Towards elucidating the stability, dynamics and architecture of the nucleosome remodeling and deacetylase complex by using quantitative interaction proteomics. FEBS J., doi:10.1111/febs.12972.
-
(2014)
FEBS J.
-
-
Kloet, S.L.1
Baymaz, H.I.2
Makowski, M.3
Groenewold, V.4
Jansen, P.W.5
Berendsen, M.6
Niazi, H.7
Kops, G.J.8
Vermeulen, M.9
-
16
-
-
84871740411
-
Stoichiometry of chromatin-associated protein complexes revealed by label-free quantitative mass spectrometry-based proteomics
-
Smits,A.H., Jansen,P.W., Poser,I., Hyman,A.A. and Vermeulen,M. (2013) Stoichiometry of chromatin-associated protein complexes revealed by label-free quantitative mass spectrometry-based proteomics. Nucleic Acids Res., 41, e28.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. e28
-
-
Smits, A.H.1
Jansen, P.W.2
Poser, I.3
Hyman, A.A.4
Vermeulen, M.5
-
17
-
-
0037127259
-
Methylation of promoter proximal-transcribed sequences of an embryonic globin gene inhibits transcription in primary erythroid cells and promotes formation of a cell type-specific methyl cytosine binding complex
-
Singal,R., Wang,S.Z., Sargent,T., Zhu,S.Z. and Ginder,G.D. (2002) Methylation of promoter proximal-transcribed sequences of an embryonic globin gene inhibits transcription in primary erythroid cells and promotes formation of a cell type-specific methyl cytosine binding complex. J. Biol. Chem., 277, 1897-1905.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 1897-1905
-
-
Singal, R.1
Wang, S.Z.2
Sargent, T.3
Zhu, S.Z.4
Ginder, G.D.5
-
18
-
-
79956325051
-
p66{alpha}-MBD2 coiled-coil interaction and recruitment of mi-2 are critical for globin gene silencing by the MBD2-NuRD complex
-
Gnanapragasam,M.N., Scarsdale,J.N., Amaya,M.L., Webb,H.D., Desai,M.A., Walavalkar,N.M., Wang,S.Z., Zu Zhu,S., Ginder,G.D. and Williams,D.C. Jr (2011) p66{alpha}-MBD2 coiled-coil interaction and recruitment of mi-2 are critical for globin gene silencing by the MBD2-NuRD complex. Proc. Natl. Acad. Sci. U.S.A., 108, 7487-7492.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 7487-7492
-
-
Gnanapragasam, M.N.1
Scarsdale, J.N.2
Amaya, M.L.3
Webb, H.D.4
Desai, M.A.5
Walavalkar, N.M.6
Wang, S.Z.7
Zu Zhu, S.8
Ginder, G.D.9
Williams, D.C.10
-
19
-
-
79952105619
-
MBD2 contributes to developmental silencing of the human epsilon-globin gene
-
Rupon,J.W., Wang,S.Z., Gnanapragasam,M., Labropoulos,S. and Ginder,G.D. (2011) MBD2 contributes to developmental silencing of the human epsilon-globin gene. Blood Cells Mol. Dis., 46, 212-219.
-
(2011)
Blood Cells Mol. Dis.
, vol.46
, pp. 212-219
-
-
Rupon, J.W.1
Wang, S.Z.2
Gnanapragasam, M.3
Labropoulos, S.4
Ginder, G.D.5
-
20
-
-
80051967782
-
Methyl-binding domain protein 2-dependent proliferation and survival of breast cancer cells
-
Mian,O.Y., Wang,S.Z., Zhu,S.Z., Gnanapragasam,M.N., Graham,L., Bear,H.D. and Ginder,G.D. (2011) Methyl-binding domain protein 2-dependent proliferation and survival of breast cancer cells. Mol. Cancer Res., 9, 1152-1162.
-
(2011)
Mol. Cancer Res.
, vol.9
, pp. 1152-1162
-
-
Mian, O.Y.1
Wang, S.Z.2
Zhu, S.Z.3
Gnanapragasam, M.N.4
Graham, L.5
Bear, H.D.6
Ginder, G.D.7
-
21
-
-
0035942170
-
Selective association of the methyl-CpG binding protein MBD2 with the silent p14/p16 locus in human neoplasia
-
Magdinier,F. and Wolffe,A.P. (2001) Selective association of the methyl-CpG binding protein MBD2 with the silent p14/p16 locus in human neoplasia. Proc. Natl. Acad. Sci. U.S.A., 98, 4990-4995.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 4990-4995
-
-
Magdinier, F.1
Wolffe, A.P.2
-
22
-
-
0037603586
-
Deficiency of Mbd2 suppresses intestinal tumorigenesis
-
Sansom,O.J., Berger,J., Bishop,S.M., Hendrich,B., Bird,A. and Clarke,A.R. (2003) Deficiency of Mbd2 suppresses intestinal tumorigenesis. Nat. Genet., 34, 145-147.
-
(2003)
Nat. Genet.
, vol.34
, pp. 145-147
-
-
Sansom, O.J.1
Berger, J.2
Bishop, S.M.3
Hendrich, B.4
Bird, A.5
Clarke, A.R.6
-
23
-
-
84889077185
-
Transcription onset of genes critical in liver carcinogenesis is epigenetically regulated by methylated DNA-binding protein MBD2
-
Stefanska,B., Suderman,M., Machnes,Z., Bhattacharyya,B., Hallett,M. and Szyf,M. (2013) Transcription onset of genes critical in liver carcinogenesis is epigenetically regulated by methylated DNA-binding protein MBD2. Carcinogenesis, 34, 2738-2749.
-
(2013)
Carcinogenesis
, vol.34
, pp. 2738-2749
-
-
Stefanska, B.1
Suderman, M.2
Machnes, Z.3
Bhattacharyya, B.4
Hallett, M.5
Szyf, M.6
-
24
-
-
77649163840
-
Nrf2 expression is regulated by epigenetic mechanisms in prostate cancer of TRAMP mice
-
Yu,S., Khor,T.O., Cheung,K.L., Li,W., Wu,T.Y., Huang,Y., Foster,B.A., Kan,Y.W. and Kong,A.N. (2010) Nrf2 expression is regulated by epigenetic mechanisms in prostate cancer of TRAMP mice. PLoS One, 5, e8579.
-
(2010)
PLoS One
, vol.5
, pp. e8579
-
-
Yu, S.1
Khor, T.O.2
Cheung, K.L.3
Li, W.4
Wu, T.Y.5
Huang, Y.6
Foster, B.A.7
Kan, Y.W.8
Kong, A.N.9
-
25
-
-
44849135120
-
Unmasking of epigenetically silenced candidate tumor suppressor genes by removal of methyl-CpG-binding domain proteins
-
Lopez-Serra,L., Ballestar,E., Ropero,S., Setien,F., Billard,L.M., Fraga,M.F., Lopez-Nieva,P., Alaminos,M., Guerrero,D., Dante,R. et al. (2008) Unmasking of epigenetically silenced candidate tumor suppressor genes by removal of methyl-CpG-binding domain proteins. Oncogene, 27, 3556-3566.
-
(2008)
Oncogene
, vol.27
, pp. 3556-3566
-
-
Lopez-Serra, L.1
Ballestar, E.2
Ropero, S.3
Setien, F.4
Billard, L.M.5
Fraga, M.F.6
Lopez-Nieva, P.7
Alaminos, M.8
Guerrero, D.9
Dante, R.10
-
26
-
-
40849139208
-
Epigenetics in cancer
-
Esteller,M. (2008) Epigenetics in cancer. N.Engl.J.Med., 358, 1148-1159.
-
(2008)
N.Engl.J.Med.
, vol.358
, pp. 1148-1159
-
-
Esteller, M.1
-
27
-
-
32644451491
-
p66alpha and p66beta of the mi-2/NuRD complex mediate MBD2 and histone interaction
-
Brackertz,M., Gong,Z., Leers,J. and Renkawitz,R. (2006) p66alpha and p66beta of the mi-2/NuRD complex mediate MBD2 and histone interaction. Nucleic Acids Res., 34, 397-406.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 397-406
-
-
Brackertz, M.1
Gong, Z.2
Leers, J.3
Renkawitz, R.4
-
28
-
-
84870057622
-
Intrinsically disordered proteins: A 10-year recap
-
Tompa,P. (2012) Intrinsically disordered proteins: A 10-year recap. Trends Biochem. Sci., 37, 509-516.
-
(2012)
Trends Biochem. Sci.
, vol.37
, pp. 509-516
-
-
Tompa, P.1
-
29
-
-
84901044328
-
Transcriptional repressor domain of MBD1 is intrinsically disordered and interacts with its binding partners in a selective manner
-
Hameed,U.F., Lim,J., Zhang,Q., Wasik,M.A., Yang,D. and Swaminathan,K. (2014) Transcriptional repressor domain of MBD1 is intrinsically disordered and interacts with its binding partners in a selective manner. Sci. Rep., 4, e4896.
-
(2014)
Sci. Rep.
, vol.4
-
-
Hameed, U.F.1
Lim, J.2
Zhang, Q.3
Wasik, M.A.4
Yang, D.5
Swaminathan, K.6
-
30
-
-
34447536953
-
Intrinsic disorder and autonomous domain function in the multifunctional nuclear protein, MeCP2
-
Adams,V.H., McBryant,S.J., Wade,P.A., Woodcock,C.L. and Hansen,J.C. (2007) Intrinsic disorder and autonomous domain function in the multifunctional nuclear protein, MeCP2. J. Biol. Chem., 282, 15057-15064.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 15057-15064
-
-
Adams, V.H.1
McBryant, S.J.2
Wade, P.A.3
Woodcock, C.L.4
Hansen, J.C.5
-
31
-
-
0042090323
-
Solution structure of the phosphoryl transfer complex between the signal-transducing protein IIAGlucose and the cytoplasmic domain of the glucose transporter IICBGlucose of the escherichia coli glucose phosphotransferase system
-
Cai,M., Williams,D.C. Jr, Wang,G., Lee,B.R., Peterkofsky,A. and Clore,G.M. (2003) Solution structure of the phosphoryl transfer complex between the signal-transducing protein IIAGlucose and the cytoplasmic domain of the glucose transporter IICBGlucose of the escherichia coli glucose phosphotransferase system. J. Biol. Chem., 278, 25191-25206.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 25191-25206
-
-
Cai, M.1
Williams, D.C.2
Wang, G.3
Lee, B.R.4
Peterkofsky, A.5
Clore, G.M.6
-
32
-
-
84923327323
-
Solution structure and intramolecular exchange of methyl-cytosine binding domain protein 4 (MBD4) on DNA suggests a mechanism to scan for mCpG/TpG mismatches
-
Walavalkar,N.M., Cramer,J.M., Buchwald,W.A., Scarsdale,J.N. and Williams,D.C. Jr (2014) Solution structure and intramolecular exchange of methyl-cytosine binding domain protein 4 (MBD4) on DNA suggests a mechanism to scan for mCpG/TpG mismatches. Nucleic Acids Res., 42, 11218-11232.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 11218-11232
-
-
Walavalkar, N.M.1
Cramer, J.M.2
Buchwald, W.A.3
Scarsdale, J.N.4
Williams, D.C.5
-
33
-
-
80052016907
-
Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence
-
Scarsdale,J.N., Webb,H.D., Ginder,G.D. and Williams,D.C. Jr (2011) Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence. Nucleic Acids Res., 39, 6741-6752.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 6741-6752
-
-
Scarsdale, J.N.1
Webb, H.D.2
Ginder, G.D.3
Williams, D.C.4
-
34
-
-
0036707991
-
Modern analytical ultracentrifugation in protein science: A tutorial review
-
Lebowitz,J., Lewis,M.S. and Schuck,P. (2002) Modern analytical ultracentrifugation in protein science: A tutorial review. Protein Sci., 11, 2067-2079.
-
(2002)
Protein Sci.
, vol.11
, pp. 2067-2079
-
-
Lebowitz, J.1
Lewis, M.S.2
Schuck, P.3
-
35
-
-
0034009520
-
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling
-
Schuck,P. (2000) Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling. Biophys. J., 78, 1606-1619.
-
(2000)
Biophys. J.
, vol.78
, pp. 1606-1619
-
-
Schuck, P.1
-
36
-
-
84873297839
-
Unique features of the anti-parallel, heterodimeric coiled-coil interaction between methyl-cytosine binding domain 2 (MBD2) homologues and GATA zinc finger domain containing 2A (GATAD2A/p66alpha)
-
Walavalkar,N.M., Gordon,N. and Williams,D.C. Jr (2013) Unique features of the anti-parallel, heterodimeric coiled-coil interaction between methyl-cytosine binding domain 2 (MBD2) homologues and GATA zinc finger domain containing 2A (GATAD2A/p66alpha). J. Biol. Chem., 288, 3419-3427.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 3419-3427
-
-
Walavalkar, N.M.1
Gordon, N.2
Williams, D.C.3
-
37
-
-
0034635998
-
Photo-control of helix content in a short peptide
-
Kumita,J.R., Smart,O.S. and Woolley,G.A. (2000) Photo-control of helix content in a short peptide. Proc. Natl. Acad. Sci. U.S.A., 97, 3803-3808.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 3803-3808
-
-
Kumita, J.R.1
Smart, O.S.2
Woolley, G.A.3
-
38
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio,F., Grzesiek,S., Vuister,G.W., Zhu,G., Pfeifer,J. and Bax,A. (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR, 6, 277-293.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
39
-
-
19444382397
-
The CCPN data model for NMR spectroscopy: Development of a software pipeline
-
Vranken,W.F., Boucher,W., Stevens,T.J., Fogh,R.H., Pajon,A., Llinas,M., Ulrich,E.L., Markley,J.L., Ionides,J. and Laue,E.D. (2005) The CCPN data model for NMR spectroscopy: development of a software pipeline. Proteins, 59, 687-696.
-
(2005)
Proteins
, vol.59
, pp. 687-696
-
-
Vranken, W.F.1
Boucher, W.2
Stevens, T.J.3
Fogh, R.H.4
Pajon, A.5
Llinas, M.6
Ulrich, E.L.7
Markley, J.L.8
Ionides, J.9
Laue, E.D.10
-
40
-
-
0032110340
-
Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPAC-IUBMB-IUPAB inter-union task group on the standardization of data bases of protein and nucleic acid structures determined by NMR spectroscopy
-
Markley,J.L., Bax,A., Arata,Y., Hilbers,C.W., Kaptein,R., Sykes,B.D., Wright,P.E. and Wuthrich,K. (1998) Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPAC-IUBMB-IUPAB inter-union task group on the standardization of data bases of protein and nucleic acid structures determined by NMR spectroscopy. J. Biomol. NMR, 12, 1-23.
-
(1998)
J. Biomol. NMR
, vol.12
, pp. 1-23
-
-
Markley, J.L.1
Bax, A.2
Arata, Y.3
Hilbers, C.W.4
Kaptein, R.5
Sykes, B.D.6
Wright, P.E.7
Wuthrich, K.8
-
41
-
-
80051704532
-
Sequence correction of random coil chemical shifts: Correlation between neighbor correction factors and changes in the ramachandran distribution
-
Kjaergaard,M. and Poulsen,F.M. (2011) Sequence correction of random coil chemical shifts: correlation between neighbor correction factors and changes in the ramachandran distribution. J. Biomol. NMR, 50, 157-165.
-
(2011)
J. Biomol. NMR
, vol.50
, pp. 157-165
-
-
Kjaergaard, M.1
Poulsen, F.M.2
-
42
-
-
38949087967
-
Calcium phosphate transfection
-
Kingston,R.E., Chen,C.A. and Okayama,H. (2003) Calcium phosphate transfection. Curr. Protoc. Cell. Biol., 19, 20.3.1-20.3.8.
-
(2003)
Curr. Protoc. Cell. Biol.
, vol.19
, pp. 20.3.1-20.3.8
-
-
Kingston, R.E.1
Chen, C.A.2
Okayama, H.3
-
43
-
-
0027521381
-
The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences
-
Bjellqvist,B., Hughes,G.J., Pasquali,C., Paquet,N., Ravier,F., Sanchez,J.C., Frutiger,S. and Hochstrasser,D. (1993) The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences. Electrophoresis, 14, 1023-1031.
-
(1993)
Electrophoresis
, vol.14
, pp. 1023-1031
-
-
Bjellqvist, B.1
Hughes, G.J.2
Pasquali, C.3
Paquet, N.4
Ravier, F.5
Sanchez, J.C.6
Frutiger, S.7
Hochstrasser, D.8
-
44
-
-
0001913048
-
Predicting protein disorder for N-, C-, and internal regions
-
Li,X., Romero,P., Rani,M., Dunker,A.K. and Obradovic,Z. (1999) Predicting protein disorder for N-, C-, and internal regions. Genome Inform. Ser. Workshop Genome Inform., 10, 30-40.
-
(1999)
Genome Inform. Ser. Workshop Genome Inform.
, vol.10
, pp. 30-40
-
-
Li, X.1
Romero, P.2
Rani, M.3
Dunker, A.K.4
Obradovic, Z.5
-
45
-
-
0000332920
-
Sequence data analysis for long disordered regions prediction in the calcineurin family
-
Romero,Obradovic, and Dunker,K. (1997) Sequence data analysis for long disordered regions prediction in the calcineurin family. Genome Inform. Ser. Workshop Genome Inform., 8, 110-124.
-
(1997)
Genome Inform. Ser. Workshop Genome Inform.
, vol.8
, pp. 110-124
-
-
Romero1
Obradovic2
Dunker, K.3
-
46
-
-
82655180384
-
Fuzziness: Linking regulation to protein dynamics
-
Fuxreiter,M. (2012) Fuzziness: linking regulation to protein dynamics. Mol. Biosyst, 8, 168-177.
-
(2012)
Mol. Biosyst
, vol.8
, pp. 168-177
-
-
Fuxreiter, M.1
-
47
-
-
84859494186
-
Fuzzy complexes: A more stochastic view of protein function
-
Fuxreiter,M. and Tompa,P. (2012) Fuzzy complexes: a more stochastic view of protein function. Adv. Exp. Med. Biol., 725, 1-14.
-
(2012)
Adv. Exp. Med. Biol.
, vol.725
, pp. 1-14
-
-
Fuxreiter, M.1
Tompa, P.2
-
48
-
-
79958741408
-
Intrinsically disordered proteins from A to Z
-
Uversky,V.N. (2011) Intrinsically disordered proteins from A to Z. Int. J. Biochem. Cell Biol., 43, 1090-1103.
-
(2011)
Int. J. Biochem. Cell Biol.
, vol.43
, pp. 1090-1103
-
-
Uversky, V.N.1
-
49
-
-
34250815165
-
Characterization of molecular recognition features, MoRFs, and their binding partners
-
Vacic,V., Oldfield,C.J., Mohan,A., Radivojac,P., Cortese,M.S., Uversky,V.N. and Dunker,A.K. (2007) Characterization of molecular recognition features, MoRFs, and their binding partners. J. Proteome Res., 6, 2351-2366.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 2351-2366
-
-
Vacic, V.1
Oldfield, C.J.2
Mohan, A.3
Radivojac, P.4
Cortese, M.S.5
Uversky, V.N.6
Dunker, A.K.7
-
50
-
-
33748456399
-
Analysis of molecular recognition features (MoRFs)
-
Mohan,A., Oldfield,C.J., Radivojac,P., Vacic,V., Cortese,M.S., Dunker,A.K. and Uversky,V.N. (2006) Analysis of molecular recognition features (MoRFs). J. Mol. Biol., 362, 1043-1059.
-
(2006)
J. Mol. Biol.
, vol.362
, pp. 1043-1059
-
-
Mohan, A.1
Oldfield, C.J.2
Radivojac, P.3
Vacic, V.4
Cortese, M.S.5
Dunker, A.K.6
Uversky, V.N.7
-
51
-
-
12244253036
-
MBD3L1 and MBD3L2, two new proteins homologous to the methyl-CpG-binding proteins MBD2 and MBD3: Characterization of MBD3L1 as a testis-specific transcriptional repressor
-
Jiang,C.L., Jin,S.G., Lee,D.H., Lan,Z.J., Xu,X., O'Connor,T.R., Szabó,P.E., Mann,J.R., Cooney,A.J. and Pfeifer,G.P. (2002) MBD3L1 and MBD3L2, two new proteins homologous to the methyl-CpG-binding proteins MBD2 and MBD3: characterization of MBD3L1 as a testis-specific transcriptional repressor. Genomics, 80, 621-629.
-
(2002)
Genomics
, vol.80
, pp. 621-629
-
-
Jiang, C.L.1
Jin, S.G.2
Lee, D.H.3
Lan, Z.J.4
Xu, X.5
O'Connor, T.R.6
Szabó, P.E.7
Mann, J.R.8
Cooney, A.J.9
Pfeifer, G.P.10
-
52
-
-
10644222635
-
MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex
-
Jiang,C., Jin,S. and Pfeifer,G.P. (2004) MBD3L1 is a transcriptional repressor that interacts with methyl-CpG-binding protein 2 (MBD2) and components of the NuRD complex. J. Biol. Chem., 279, 52456-52464.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 52456-52464
-
-
Jiang, C.1
Jin, S.2
Pfeifer, G.P.3
-
53
-
-
16844372216
-
MBD3L2 interacts with MBD3 and components of the NuRD complex and can oppose MBD2-MeCP1-mediated methylation silencing
-
Jin,S., Jiang,C., Rauch,T., Li,H. and Pfeifer,G.P. (2005) MBD3L2 interacts with MBD3 and components of the NuRD complex and can oppose MBD2-MeCP1-mediated methylation silencing. J. Biol. Chem., 280, 12700-12709.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 12700-12709
-
-
Jin, S.1
Jiang, C.2
Rauch, T.3
Li, H.4
Pfeifer, G.P.5
-
54
-
-
77952641629
-
Unique properties and interactions of the domains of the methylated DNA binding protein 2 (MeCP2)
-
Ghosh,R.P., Nikitina,T., Horowitz-Scherer,R.A., Gierasch,L.M., Uversky,V.N., Hite,K., Hansen,J.C. and Woodcock,C.L. (2010) Unique properties and interactions of the domains of the methylated DNA binding protein 2 (MeCP2). Biochemistry, 49, 4395-4410.
-
(2010)
Biochemistry
, vol.49
, pp. 4395-4410
-
-
Ghosh, R.P.1
Nikitina, T.2
Horowitz-Scherer, R.A.3
Gierasch, L.M.4
Uversky, V.N.5
Hite, K.6
Hansen, J.C.7
Woodcock, C.L.8
-
55
-
-
0027311259
-
Close encounters: Why unstructured, polymeric domains can increase rates of specific macromolecular association
-
Pontius,B.W. (1993) Close encounters: why unstructured, polymeric domains can increase rates of specific macromolecular association. Trends Biochem. Sci., 18, 181-186.
-
(1993)
Trends Biochem. Sci.
, vol.18
, pp. 181-186
-
-
Pontius, B.W.1
-
56
-
-
33645214608
-
Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks
-
Patil,A. and Nakamura,H. (2006) Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks. FEBS Lett., 580, 2041-2045.
-
(2006)
FEBS Lett.
, vol.580
, pp. 2041-2045
-
-
Patil, A.1
Nakamura, H.2
-
57
-
-
33748074139
-
Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes
-
Haynes,C., Oldfield,C.J., Ji,F., Klitgord,N., Cusick,M.E., Radivojac,P., Uversky,V.N., Vidal,M. and Iakoucheva,L.M. (2006) Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes. PLoS Comput. Biol., 2, e100.
-
(2006)
PLoS Comput. Biol.
, vol.2
, pp. e100
-
-
Haynes, C.1
Oldfield, C.J.2
Ji, F.3
Klitgord, N.4
Cusick, M.E.5
Radivojac, P.6
Uversky, V.N.7
Vidal, M.8
Iakoucheva, L.M.9
-
58
-
-
27144464910
-
Flexible nets. The roles of intrinsic disorder in protein interaction networks
-
Dunker,A.K., Cortese,M.S., Romero,P., Iakoucheva,L.M. and Uversky,V.N. (2005) Flexible nets. the roles of intrinsic disorder in protein interaction networks. FEBS J., 272, 5129-5148.
-
(2005)
FEBS J.
, vol.272
, pp. 5129-5148
-
-
Dunker, A.K.1
Cortese, M.S.2
Romero, P.3
Iakoucheva, L.M.4
Uversky, V.N.5
-
59
-
-
84891720942
-
Class I HDACs share a common mechanism of regulation by inositol phosphates
-
Millard,C.J., Watson,P.J., Celardo,I., Gordiyenko,Y., Cowley,S.M., Robinson,C.V., Fairall,L. and Schwabe,J.W. (2013) Class I HDACs share a common mechanism of regulation by inositol phosphates. Mol. Cell, 51, 57-67.
-
(2013)
Mol. Cell
, vol.51
, pp. 57-67
-
-
Millard, C.J.1
Watson, P.J.2
Celardo, I.3
Gordiyenko, Y.4
Cowley, S.M.5
Robinson, C.V.6
Fairall, L.7
Schwabe, J.W.8
-
60
-
-
84905842668
-
Insight into the architecture of the NuRD complex: Structure of the RbAp48-MTA1 subcomplex
-
Alqarni,S.S., Murthy,A., Zhang,W., Przewloka,M.R., Silva,A.P., Watson,A.A., Lejon,S., Pei,X.Y., Smits,A.H., Kloet,S.L. et al. (2014) Insight into the architecture of the NuRD complex: structure of the RbAp48-MTA1 subcomplex. J. Biol. Chem., 289, 21844-21855.
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 21844-21855
-
-
Alqarni, S.S.1
Murthy, A.2
Zhang, W.3
Przewloka, M.R.4
Silva, A.P.5
Watson, A.A.6
Lejon, S.7
Pei, X.Y.8
Smits, A.H.9
Kloet, S.L.10
-
61
-
-
84904044398
-
Alternative splicing of MBD2 supports self-renewal in human pluripotent stem cells
-
Lu,Y., Loh,Y.H., Li,H., Cesana,M., Ficarro,S.B., Parikh,J.R., Salomonis,N., Toh,C.X., Andreadis,S.T., Luckey,C.J. et al. (2014) Alternative splicing of MBD2 supports self-renewal in human pluripotent stem cells. Cell. Stem Cell., 15, 92-101.
-
(2014)
Cell. Stem Cell.
, vol.15
, pp. 92-101
-
-
Lu, Y.1
Loh, Y.H.2
Li, H.3
Cesana, M.4
Ficarro, S.B.5
Parikh, J.R.6
Salomonis, N.7
Toh, C.X.8
Andreadis, S.T.9
Luckey, C.J.10
-
62
-
-
0037137899
-
Prostasin serine protease inhibits breast cancer invasiveness and is transcriptionally regulated by promoter DNA methylation
-
Chen,L.M. and Chai,K.X. (2002) Prostasin serine protease inhibits breast cancer invasiveness and is transcriptionally regulated by promoter DNA methylation. Int. J. Cancer, 97, 323-329.
-
(2002)
Int. J. Cancer
, vol.97
, pp. 323-329
-
-
Chen, L.M.1
Chai, K.X.2
-
63
-
-
0035399691
-
Down-regulation of prostasin serine protease: A potential invasion suppressor in prostate cancer
-
Chen,L.M., Hodge,G.B., Guarda,L.A., Welch,J.L., Greenberg,N.M. and Chai,K.X. (2001) Down-regulation of prostasin serine protease: a potential invasion suppressor in prostate cancer. Prostate, 48, 93-103.
-
(2001)
Prostate
, vol.48
, pp. 93-103
-
-
Chen, L.M.1
Hodge, G.B.2
Guarda, L.A.3
Welch, J.L.4
Greenberg, N.M.5
Chai, K.X.6
-
64
-
-
0041384333
-
The N-terminal domain of p53 is natively unfolded
-
Dawson,R., Muller,L., Dehner,A., Klein,C., Kessler,H. and Buchner,J. (2003) The N-terminal domain of p53 is natively unfolded. J. Mol. Biol., 332, 1131-1141.
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 1131-1141
-
-
Dawson, R.1
Muller, L.2
Dehner, A.3
Klein, C.4
Kessler, H.5
Buchner, J.6
-
65
-
-
44449116120
-
Structure of tumor suppressor p53 and its intrinsically disordered N-terminal transactivation domain
-
Wells,M., Tidow,H., Rutherford,T.J., Markwick,P., Jensen,M.R., Mylonas,E., Svergun,D.I., Blackledge,M. and Fersht,A.R. (2008) Structure of tumor suppressor p53 and its intrinsically disordered N-terminal transactivation domain. Proc. Natl. Acad. Sci. U.S.A., 105, 5762-5767.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 5762-5767
-
-
Wells, M.1
Tidow, H.2
Rutherford, T.J.3
Markwick, P.4
Jensen, M.R.5
Mylonas, E.6
Svergun, D.I.7
Blackledge, M.8
Fersht, A.R.9
-
66
-
-
84902852963
-
Targeting the disordered C terminus of PTP1B with an allosteric inhibitor
-
Krishnan,N., Koveal,D., Miller,D.H., Xue,B., Akshinthala,S.D., Kragelj,J., Jensen,M.R., Gauss,C.M., Page,R., Blackledge,M. et al. (2014) Targeting the disordered C terminus of PTP1B with an allosteric inhibitor. Nat. Chem. Biol., 10, 558-566.
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 558-566
-
-
Krishnan, N.1
Koveal, D.2
Miller, D.H.3
Xue, B.4
Akshinthala, S.D.5
Kragelj, J.6
Jensen, M.R.7
Gauss, C.M.8
Page, R.9
Blackledge, M.10
-
67
-
-
84879628727
-
An androgen receptor N-terminal domain antagonist for treating prostate cancer
-
Myung,J.K., Banuelos,C.A., Fernandez,J.G., Mawji,N.R., Wang,J., Tien,A.H., Yang,Y.C., Tavakoli,I., Haile,S., Watt,K. et al. (2013) An androgen receptor N-terminal domain antagonist for treating prostate cancer. J. Clin. Invest., 123, 2948-2960.
-
(2013)
J. Clin. Invest.
, vol.123
, pp. 2948-2960
-
-
Myung, J.K.1
Banuelos, C.A.2
Fernandez, J.G.3
Mawji, N.R.4
Wang, J.5
Tien, A.H.6
Yang, Y.C.7
Tavakoli, I.8
Haile, S.9
Watt, K.10
-
68
-
-
0035815664
-
Evidence for a partially folded intermediate in alpha-synuclein fibril formation
-
Uversky,V.N., Li,J. and Fink,A.L. (2001) Evidence for a partially folded intermediate in alpha-synuclein fibril formation. J. Biol. Chem., 276, 10737-10744.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 10737-10744
-
-
Uversky, V.N.1
Li, J.2
Fink, A.L.3
-
69
-
-
84895866256
-
Targeting the intrinsically disordered structural ensemble of alpha-synuclein by small molecules as a potential therapeutic strategy for parkinson's disease
-
Toth,G., Gardai,S.J., Zago,W., Bertoncini,C.W., Cremades,N., Roy,S.L., Tambe,M.A., Rochet,J.C., Galvagnion,C., Skibinski,G. et al. (2014) Targeting the intrinsically disordered structural ensemble of alpha-synuclein by small molecules as a potential therapeutic strategy for parkinson's disease. PLoS One, 9, e87133.
-
(2014)
PLoS One
, vol.9
-
-
Toth, G.1
Gardai, S.J.2
Zago, W.3
Bertoncini, C.W.4
Cremades, N.5
Roy, S.L.6
Tambe, M.A.7
Rochet, J.C.8
Galvagnion, C.9
Skibinski, G.10
-
70
-
-
0037133575
-
Small-molecule antagonists of Myc/Max dimerization inhibit myc-induced transformation of chicken embryo fibroblasts
-
Berg,T., Cohen,S.B., Desharnais,J., Sonderegger,C., Maslyar,D.J., Goldberg,J., Boger,D.L. and Vogt,P.K. (2002) Small-molecule antagonists of Myc/Max dimerization inhibit myc-induced transformation of chicken embryo fibroblasts. Proc. Natl. Acad. Sci. U.S.A., 99, 3830-3835.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 3830-3835
-
-
Berg, T.1
Cohen, S.B.2
Desharnais, J.3
Sonderegger, C.4
Maslyar, D.J.5
Goldberg, J.6
Boger, D.L.7
Vogt, P.K.8
-
71
-
-
67650523478
-
Multiple independent binding sites for small-molecule inhibitors on the oncoprotein c-myc
-
Hammoudeh,D.I., Follis,A.V., Prochownik,E.V. and Metallo,S.J. (2009) Multiple independent binding sites for small-molecule inhibitors on the oncoprotein c-myc. J. Am. Chem. Soc., 131, 7390-7401.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 7390-7401
-
-
Hammoudeh, D.I.1
Follis, A.V.2
Prochownik, E.V.3
Metallo, S.J.4
|