A comparative study on microbiota from the intestine of Prussian carp (Carassius gibelio) and their aquatic environmental compartments, using different molecular methods

Journal of Applied Microbiology

Volumn 119, Issue 4, 2015, Pages 948-961

  Kashinskaya, E N ^a   Belkova, N L ^b,c   Izvekova, G I ^d   Simonov, E P ^a,e   Andree, K B ^f   Glupov, V V ^a   Baturina, O A ^g   Kabilov, M R ^g   Solovyev, M M ^a  

^a INSTITUTE OF SYSTEMATICS AND ECOLOGY OF ANIMALS   (Russian Federation)

^b LIMNOLOGICAL INSTITUTE   (Russian Federation)

^c IRKUTSK STATE UNIVERSITY   (Russian Federation)

^d PAPANIN INSTITUTE FOR BIOLOGY OF INLAND WATERS   (Russian Federation)

^e TOMSK STATE UNIVERSITY   (Russian Federation)

^f IRTA   (Spain)

^g INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

Author keywords

16S rDNA clone libraries; Fish microbiota; Genetic diversity; Group specific PCR; Metagenomic sequencing

Indexed keywords

CLONING; ECOSYSTEMS; LIBRARIES; POLYMERASE CHAIN REACTION;

16S RDNA CLONE LIBRARY; CHIRONOMIDS; ENVIRONMENTAL COMPARTMENT; FISH MICROBIOTA; GENETICS DIVERSITIES; GROUP-SPECIFIC PCR; METAGENOMIC SEQUENCING; METAGENOMICS; MICROBIOTAS; MOLECULAR METHODS;

BACTERIA;

AQUATIC ENVIRONMENT; BACTERIUM; BIOENGINEERING; COMMUNITY STRUCTURE; COMPARATIVE STUDY; CYPRINID; DNA; GENETIC VARIATION; MICROBIAL COMMUNITY; MICROBIOLOGY; MOLECULAR ANALYSIS;

ACTINOBACTERIA; AEROMONADACEAE; AEROMONADALES; AQUATIC ENVIRONMENT; ARTICLE; BACTERIAL GENETICS; BACTEROIDALES; BACTEROIDETES; BURKHOLDERIALES; CHIRONOMIDAE; CHLOROPLAST; CLOSTRIDIALES; COMPARATIVE STUDY; CYANOBACTERIUM; DESULFOBACTERALES; ENTEROBACTERIACEAE; EURYARCHAEOTA; FAMILY; FIRMICUTES; FLAVOBACTERIALES; GENE SEQUENCE; GIBEL CARP; HIGH THROUGHPUT SEQUENCING; INTESTINE FLORA; METAGENOMICS; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; NITROSPIRA; NONHUMAN; PLANCTOMYCETES; POLYMERASE CHAIN REACTION; PROTEOBACTERIA; SPHINGOBACTERIALES; VERRUCOMICROBIA; VIBRIONALES; ANIMAL; AQUACULTURE; BACTERIUM; BACTERIUM IDENTIFICATION; CARP; CLASSIFICATION; ECOSYSTEM; GENETICS; INTESTINE; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PROCEDURES;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); BACTEROIDETES; CARASSIUS GIBELIO; CHIRONOMIDAE; CYANOBACTERIA; CYPRINIDAE; FIRMICUTES; PROTEOBACTERIA;

RNA 16S;

ANIMALS; AQUACULTURE; BACTERIA; BACTERIAL TYPING TECHNIQUES; CARPS; ECOSYSTEM; GASTROINTESTINAL MICROBIOME; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; INTESTINES; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S;

EID: 84942199076     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/jam.12904     Document Type: Article

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