Phylogenetic analysis of intestinal bacteria of freshwater salmon Salmo salar and sea trout Salmo trutta trutta and diet

Fisheries Science

Volumn 74, Issue 6, 2008, Pages 1307-1314

  Skrodenyte, Vesta ^a   Sruoga, Aniolas ^a   Butkauskas, Dalius ^a   Skrupskelis, Kestutis ^a  

^a VILNIUS UNIVERSITY   (Lithuania)

Author keywords

16S rRNA gene sequencing; Intestinal microbiota; Salmon; Sea trout

Indexed keywords

AEROMONAS; BACTERIA (MICROORGANISMS); BUTTIAUXELLA; CARNOBACTERIUM; ENTEROBACTER; ENTEROBACTERIACEAE; MOELLERELLA; PANTOEA; PISCES; PLESIOMONAS; PRAGIA; PSEUDOMONAS; RAHNELLA; SALMO SALAR; SALMO TRUTTA; SALMO TRUTTA TRUTTA; SALMONIDAE; SERRATIA; TIEDJEIA ARCTICA;

EID: 67049170919     PISSN: 09199268     EISSN: 14442906     Source Type: Journal    
DOI: 10.1111/j.1444-2906.2008.01656.x     Document Type: Article

References (44)

1. Macki RI. Gut environment and evolution of mutualistic fermentative digestion. In: Mackie RI, White BA (eds). Gastrointestinal Microbiology, Vol. 1. Gastrointestinal Ecosystems and Fermentations. Chapman & Hall, NewYork. 1997; 156-198.
2. Vaahtovuo J, Toivanen P, Eerola E. Study of murine faecal microflora by cellular fatty acid analysis; effect of age and mouse strain. Antonie Van Leeuwenhoek 2001; 80: 35-42.
3. 12- producing ability of the intestinal microflora of freshwater fish. Aquaculture 1991; 92: 267-276.
4. Sugita H, Kawasaki J, Deguchi Y. Production of amylase by the intestinal microflora in cultured freshwater fish. Let. Appl.Microbiol. 1997; 24: 105-108.
5. Sugita H, Ito Y. Identification of intestinal bacteria from Japanese flounder (Paralichthys olivaceus) and their ability to digest chitin. Let. Appl.Microbiol. 2006; 43: 336-342.
6. Ringø E, Gatesoupe FJ. Lactic acid bacteria in fish: a review. Aquaculture 1998; 160: 177-203.
7. Saha S, Roy RN, Sen KS, Ray AK. Characterization of cellulose-producing bacteria from the digestive tract of tilapia, Oreochromis mossambica (Peters) and grass carp, Ctenopharyngodon idella (Valenciennes). Aquaculture Res. 2006; 37: 380-388.
8. Skrodenyte-Arbaciauskiene V, Sruoga A, Butkauskas D. Assessment of microbial diversity in the river trout Salmo trutta fario L. intestinal tract identified by partial 16S rRNA gene sequence analysis. Fish. Sci. 2006; 72: 597-602.
9. Cahill MM. Bacterial flora of fishes: a review. Microb. Ecol. 1990; 19: 21-41.
10. Trust TJ, Sparrow RAH. The bacterial flora in the alimentary tract of freshwater salmonid fishes. Can. J.Microbiol. 1974; 20: 1219-1228.
11. Hosley RW. A review of the bacterial flora of teleosts and elasmobranches, including methods for its analysis. J. Fish. Biol. 1997; 10: 529-553.
12. Sakata T. Microflora in digestive tract of fish and shell fish. In: Lesel R (ed.). Microbiology in Poeciloterms. Elsevier Science, Amsterdam. 1990; 171-176
13. Bairagi A, Gosh K, Sen SK, Ray AK. Enzyme producing bacterial flora isolated from fish digestive tracts. Aquaculture Int. 2002; 10: 109-121.
14. Gosh K, Sen SK, Ray AK. Characterization of Bacilli isolated from the gut of rohu, Labeo rohita, fingerlings and its significance in digestion. J. Appl. Aquacult. 2002; 12: 33-42.
15. Yoshimizu M, Kimura T, Sakai M. Studies on the intestinal microflora of salmonids - I. The intestinal microflora of fish reared in freshwater and seawater. Nippon Suisan Gakkaishi 1976; 42: 91-99.
16. Yoshimizu M, Kimura T, Sakai M. Studies on the intestinal microflora of salmonids - II. Effects of artificial transplanting from freshwater into sea water on the intestinal microflora of feeding and non-feeding fish. Nippon Suisan Gakkaishi 1976; 42: 863-873.
17. Yoshimizu M, Kamiyama K, Kimura T, Sakai M. Studies on the intestinal microflora of salmonids-IV. The intestinal microflora of fresh water salmon. Nippon Suisan Gakkaishi 1976; 42: 1281-1290.
18. Yoshimizu M, Kimura T, Sakai M. Studies on the intestinal microflora of salmonids - V. The intestinal microflora of the anadromous salmon. Nippon Suisan Gakkaishi 1976; 42: 1291-1298.
19. Ringø E. Does dietary linoleic acid affect intestinal microflora in Arctic charr Salvelinus alpinus (L.)? Aquacult. Fish. Manag. 1993; 24: 133-135.
20. 3) affect faecal lipid and intestinal bacterial flora in Arctic charr Salvelinus alpinus (L.)? Aquacult. Fish.Manag 1993; 24: 767-776.
21. Ringø E, Strøm E. Microflora of Arctic charr. Salvelinus alpinus (L.). I. The gastrointestinal microflora of free-living fish, and the effect of diet and salinity on intestinal microflora. Aquacult. Fish.Manag 1994; 25: 623-629.
22. Ringø E, Strøm E, Tabachek JA. Intestinal microflora of salmonids: a review. Aquacult. Res. 1995; 26: 773-789.
23. Ringø E, Birkbeck TH. Intestinal microflora of fish larvae and fry. Aquacult. Res. 1999; 30: 73-93.
24. Spanggaard B,Huber I,Nielsen J,Nielsen T, Appel KF, Gram L. The microflora of rainbow trout intestine: a comparison of traditional and molecular identification. Aquaculture 2000; 182: 1-15.
25. Holben WE, Williams P, Saarinen M, Särkilahti LK, Apajalahti JHA. Phylogenetic analysis of intestinal microflora indicates a novelMycoplasma phylotype in farmed andwild salmon. Microbiol. Ecol. 2002; 44: 175-185.
26. Huber I, Spanggaard B, Appel KF, Rossen L,Nielsen T, Gram L. Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Oncorhynchus mykiss, Waulbaum). J. Appl. Microbiol. 2004; 96: 117-132.
27. Namba A,Mano N,Hirose H. Phylogenetic analysis of intestinal bacteria and their adhesive capability in relation to the intestinal mucus of carp. J.Appl.Microbiol. 2007; 102: 1307-1317.
28. Kim D-H, Brunt J, Austin B.Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss). J. Appl.Microbiol. 2007; 102: 1654-1664.
29. Shiina A, Itoi S,Washio S, Sugita H.Molecular identification of intestinal microflora in Takifugu niphobles. Comp. Biochem. Physiol. Part D 2006; 1: 128-132.
30. Sugita H, Kurosaki M, Okamura T, Yamamoto S, Tsuchiya C. The culturability of intestinal bacteria of Japanese coastal fish. Fish. Sci. 2005; 71: 956-958.
31. Hongoh Y, Yuzawa H, Ohkuma M, Kudo T. Evaluation of primers and PCR conditions for the analysis of 16S rRNA genes from natural environment. FEMS Microb. Lett. 2003; 221: 299-304.
32. Kesminas V, Virbickas T, Repec?ka R. The present state of salmon (Salmo salar L.) in Lithuania. Acta Zool. Lituanica 2003; 13: 176-187.
33. Balevièius K (ed.). Red Data Book of Lithuania. Environmental Protections Department of Republic of Lithuania, Vilnius. 1992 (in Lithuanian).
34. Kilkus K. Geography of Lithuanian Waters. Apyaušris, Vilnius. 1998 (in Lithuanian).
35. Kesminas V. Salmon Rivers in Lithuania. Aldorija, Vilnius. 2000 (in Lithuanian).
36. Bukelskis E, Kublickas A. A Laboratory Manual of Ichthiology. Vilnius University, Vilnius. 1988 (in Lithuanian).
37. Kutikova LA, Starobogatov JI (eds). Key to Freshwater Invertebrates from the European parts of the USSR (plankton and benthos). Gidrometeoizdat, Leningrad. 1977 (in Russian).
38. Tsalolikhin SI (ed.). Key to Freshwater Invertebrates of Russia and Adjacent Lands, Vol. 3. Institute of Zoology Academy of Russian Science, St. Petersburg. 1997 (in Russian).
39. Tsalolikhin SI (ed.). Key to Freshwater Invertebrates of Russia and Adjacent Lands., Vol. 4. Institute of Zoology Academy of Russian Science, St. Petersburg. 1999 (in Russian).
40. Maidak BL, Cole JR, Lilburn TG, Parker CTJ, Saxman RP,Farris JR, Garrity GM, Olsen GJ, Schmidt TM, Tiedje JM. The RDP-II (Ribosomal Database Project). Nucleic Acids Res. 2001; 29: 173-174.
41. Nieto TP, Toranzo AE, Barja JL. Comparison between the bacterial flora associated with fingerling rainbow trout cultured in two different hatcheries in the north-west of Spain. Aquaculture 1984; 42: 193-206.
42. Trust TJ. Facultative anaerobic bacteria in the digestive tract of chum salmon (Oncorhynchus keta) maintained in fresh water under defined culture conditions. Appl. Microbiol. 1975; 29: 663-668.
43. Yoshimizu M, Kimura T, Sakai M. Microflora of the embryo and fry of salmonid. Nippon Suisan Gakkaishi 1980; 48: 967-975.
44. Ringø E, Sperstad S, Myklebust R, Mayhew TM, Olsen RE. The effect of dietary inulin on aerobic bacteria associated with hindgut of Arctic charr (Salvelinus alpinus L.). Aquacult. Res. 2006; 37: 891-897.