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Volumn 428, Issue 5, 2016, Pages 822-833

N6-Methyladenosine Modification in a Long Noncoding RNA Hairpin Predisposes Its Conformation to Protein Binding

Author keywords

FRET; MALAT1 lncRNA; N6 methyladenosine (m6A); NMR; RNA structural modeling

Indexed keywords

6 N METHYLADENOSINE; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN C; LONG UNTRANSLATED RNA; MESSENGER RNA; METASTASIS ASSOCIATED LUNG ADENOCARCINOMA TRANSCRIPT 1; PROTEIN; UNCLASSIFIED DRUG; ADENOSINE; MALAT1 LONG NON-CODING RNA, HUMAN; N(6)-METHYLADENOSINE; PROTEIN BINDING;

EID: 84941712451     PISSN: 00222836     EISSN: 10898638     Source Type: Journal    
DOI: 10.1016/j.jmb.2015.08.021     Document Type: Article
Times cited : (169)

References (39)
  • 1
    • 84922180958 scopus 로고    scopus 로고
    • Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
    • T.M. Carlile, M.F. Rojas-Duran, B. Zinshteyn, H. Shin, K.M. Bartoli, and W.V. Gilbert Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells Nature 515 2014 143 146 10.1038/nature13802
    • (2014) Nature , vol.515 , pp. 143-146
    • Carlile, T.M.1    Rojas-Duran, M.F.2    Zinshteyn, B.3    Shin, H.4    Bartoli, K.M.5    Gilbert, W.V.6
  • 2
    • 0016285746 scopus 로고
    • Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells
    • R. Desrosiers, K. Friderici, and F. Rottman Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells Proc. Natl. Acad. Sci. 71 1974 3971 3975
    • (1974) Proc. Natl. Acad. Sci. , vol.71 , pp. 3971-3975
    • Desrosiers, R.1    Friderici, K.2    Rottman, F.3
  • 4
    • 84862649489 scopus 로고    scopus 로고
    • Comprehensive analysis of mRNA methylation reveals enrichment in 3′ UTRs and near stop codons
    • K.D. Meyer, Y. Saletore, P. Zumbo, O. Elemento, C.E. Mason, and S.R. Jaffrey Comprehensive analysis of mRNA methylation reveals enrichment in 3′ UTRs and near stop codons Cell 149 2012 1635 1646 10.1016/j.cell.2012.05.003
    • (2012) Cell , vol.149 , pp. 1635-1646
    • Meyer, K.D.1    Saletore, Y.2    Zumbo, P.3    Elemento, O.4    Mason, C.E.5    Jaffrey, S.R.6
  • 6
    • 84890107723 scopus 로고    scopus 로고
    • High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis
    • S. Schwartz, S.D. Agarwala, M.R. Mumbach, M. Jovanovic, P. Mertins, A. Shishkin, and et al. High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis Cell 155 2013 1409 1421 10.1016/j.cell.2013.10.047
    • (2013) Cell , vol.155 , pp. 1409-1421
    • Schwartz, S.1    Agarwala, S.D.2    Mumbach, M.R.3    Jovanovic, M.4    Mertins, P.5    Shishkin, A.6
  • 7
    • 84875530060 scopus 로고    scopus 로고
    • 6-Methyl-adenosine modification in messenger and long non-coding RNA
    • 6-Methyl-adenosine modification in messenger and long non-coding RNA Trends Biochem. Sci. 38 2013 204 209 10.1016/j.tibs.2012.12.006
    • (2013) Trends Biochem. Sci. , vol.38 , pp. 204-209
    • Pan, T.1
  • 10
    • 84872274463 scopus 로고    scopus 로고
    • ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility
    • G. Zheng, J.A. Dahl, Y. Niu, P. Fedorcsak, C.-M. Huang, C.J. Li, and et al. ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility Mol. Cell 2012 10.1016/j.molcel.2012.10.015
    • (2012) Mol. Cell
    • Zheng, G.1    Dahl, J.A.2    Niu, Y.3    Fedorcsak, P.4    Huang, C.-M.5    Li, C.J.6
  • 11
    • 81355146483 scopus 로고    scopus 로고
    • 6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO
    • 6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO Nat. Chem. Biol. 7 2011 885 887 10.1038/nchembio.687
    • (2011) Nat. Chem. Biol. , vol.7 , pp. 885-887
    • Jia, G.1    Fu, Y.2    Zhao, X.3    Dai, Q.4    Zheng, G.5    Yang, Y.6
  • 12
    • 84887875528 scopus 로고    scopus 로고
    • RNA-methylation-dependent RNA processing controls the speed of the circadian clock
    • J.-M. Fustin, M. Doi, Y. Yamaguchi, H. Hida, S. Nishimura, M. Yoshida, and et al. RNA-methylation-dependent RNA processing controls the speed of the circadian clock Cell 155 2013 793 806 10.1016/j.cell.2013.10.026
    • (2013) Cell , vol.155 , pp. 793-806
    • Fustin, J.-M.1    Doi, M.2    Yamaguchi, Y.3    Hida, H.4    Nishimura, S.5    Yoshida, M.6
  • 14
    • 84919457819 scopus 로고    scopus 로고
    • 6A RNA modification controls cell fate transition in mammalian embryonic stem cells
    • 6A RNA modification controls cell fate transition in mammalian embryonic stem cells Cell Stem Cell 15 2014 707 719 10.1016/j.stem.2014.09.019
    • (2014) Cell Stem Cell , vol.15 , pp. 707-719
    • Batista, P.J.1    Molinie, B.2    Wang, J.3    Qu, K.4    Zhang, J.5    Li, L.6
  • 18
    • 84892372347 scopus 로고    scopus 로고
    • 6-Methyladenosine-dependent regulation of messenger RNA stability
    • 6-Methyladenosine-dependent regulation of messenger RNA stability Nature 505 2014 117 120 10.1038/nature12730
    • (2014) Nature , vol.505 , pp. 117-120
    • Wang, X.1    Lu, Z.2    Gomez, A.3    Hon, G.C.4    Yue, Y.5    Han, D.6
  • 19
    • 84924072927 scopus 로고    scopus 로고
    • 6-Methyladenosine-dependent RNA structural switches regulate RNA-protein interactions
    • 6-Methyladenosine-dependent RNA structural switches regulate RNA-protein interactions Nature 518 2015 560 564 10.1038/nature14234
    • (2015) Nature , vol.518 , pp. 560-564
    • Liu, N.1    Dai, Q.2    Zheng, G.3    He, C.4    Parisien, M.5    Pan, T.6
  • 22
    • 84907235997 scopus 로고    scopus 로고
    • Molecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain
    • S. Luo, and L. Tong Molecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain Proc. Natl. Acad. Sci. 111 2014 13834 13839 10.1073/pnas.1412742111
    • (2014) Proc. Natl. Acad. Sci. , vol.111 , pp. 13834-13839
    • Luo, S.1    Tong, L.2
  • 24
    • 0042161864 scopus 로고    scopus 로고
    • 6-alkyladenosines
    • 6-alkyladenosines Nucleic Acids Res. 31 2003 4472 4480 10.1093/nar/gkg633
    • (2003) Nucleic Acids Res. , vol.31 , pp. 4472-4480
    • Kierzek, E.1
  • 25
    • 84873323035 scopus 로고    scopus 로고
    • Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements
    • K. Zarnack, J. König, M. Tajnik, I. Martincorena, S. Eustermann, I. Stévant, and et al. Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements Cell 152 2013 453 466 10.1016/j.cell.2012.12.023
    • (2013) Cell , vol.152 , pp. 453-466
    • Zarnack, K.1    König, J.2    Tajnik, M.3    Martincorena, I.4    Eustermann, S.5    Stévant, I.6
  • 26
    • 84908389502 scopus 로고    scopus 로고
    • Structural and mechanistic insights into poly(uridine) tract recognition by the hnRNP C RNA recognition motif
    • Z. Cieniková, F.F. Damberger, J. Hall, F.H.-T. Allain, and C. Maris Structural and mechanistic insights into poly(uridine) tract recognition by the hnRNP C RNA recognition motif J. Am. Chem. Soc. 136 2014 14536 14544 10.1021/ja507690d
    • (2014) J. Am. Chem. Soc. , vol.136 , pp. 14536-14544
    • Cieniková, Z.1    Damberger, F.F.2    Hall, J.3    Allain, F.H.-T.4    Maris, C.5
  • 28
    • 84925777836 scopus 로고    scopus 로고
    • Structural imprints in vivo decode RNA regulatory mechanisms
    • R.C. Spitale, R.A. Flynn, Q.C. Zhang, P. Crisalli, B. Lee, J.-W. Jung, and et al. Structural imprints in vivo decode RNA regulatory mechanisms Nature 519 2015 486 490 10.1038/nature14263
    • (2015) Nature , vol.519 , pp. 486-490
    • Spitale, R.C.1    Flynn, R.A.2    Zhang, Q.C.3    Crisalli, P.4    Lee, B.5    Jung, J.-W.6
  • 29
    • 84888423912 scopus 로고    scopus 로고
    • 6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA
    • 6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA RNA 19 2013 1848 1856 10.1261/rna.041178.113
    • (2013) RNA , vol.19 , pp. 1848-1856
    • Liu, N.1    Parisien, M.2    Dai, Q.3    Zheng, G.4    He, C.5    Pan, T.6
  • 30
    • 67650727366 scopus 로고    scopus 로고
    • VARNA: Interactive drawing and editing of the RNA secondary structure
    • K. Darty, A. Denise, and Y. Ponty VARNA: Interactive drawing and editing of the RNA secondary structure Bioinformatics 25 2009 1974 1975 10.1093/bioinformatics/btp250
    • (2009) Bioinformatics , vol.25 , pp. 1974-1975
    • Darty, K.1    Denise, A.2    Ponty, Y.3
  • 31
    • 40449139010 scopus 로고    scopus 로고
    • The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
    • M. Parisien, and F. Major The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data Nature 452 2008 51 55 10.1038/nature06684
    • (2008) Nature , vol.452 , pp. 51-55
    • Parisien, M.1    Major, F.2
  • 32
    • 24744459633 scopus 로고    scopus 로고
    • NMR methods for studying the structure and dynamics of RNA
    • M.P. Latham, D.J. Brown, S.A. McCallum, and A. Pardi NMR methods for studying the structure and dynamics of RNA ChemBioChem 6 2005 1492 1505 10.1002/cbic.200500123
    • (2005) ChemBioChem , vol.6 , pp. 1492-1505
    • Latham, M.P.1    Brown, D.J.2    McCallum, S.A.3    Pardi, A.4
  • 34
    • 0033813064 scopus 로고    scopus 로고
    • Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy
    • S. Weiss Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy Nat. Struct. Mol. Biol. 7 2000 724 729 10.1038/78941
    • (2000) Nat. Struct. Mol. Biol. , vol.7 , pp. 724-729
    • Weiss, S.1
  • 35
    • 57549098252 scopus 로고    scopus 로고
    • Exploring RNA folding one molecule at a time
    • E.A. Alemán, R. Lamichhane, and D. Rueda Exploring RNA folding one molecule at a time Curr. Opin. Chem. Biol. 12 2008 647 654 10.1016/j.cbpa.2008.09.010
    • (2008) Curr. Opin. Chem. Biol. , vol.12 , pp. 647-654
    • Alemán, E.A.1    Lamichhane, R.2    Rueda, D.3
  • 39
    • 70349149051 scopus 로고    scopus 로고
    • New metrics for comparing and assessing discrepancies between RNA 3D structures and models
    • M. Parisien, J.A. Cruz, E. Westhof, and F. Major New metrics for comparing and assessing discrepancies between RNA 3D structures and models RNA 15 2009 1875 1885 10.1261/rna.1700409
    • (2009) RNA , vol.15 , pp. 1875-1885
    • Parisien, M.1    Cruz, J.A.2    Westhof, E.3    Major, F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.