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Volumn 2015, Issue 99, 2015, Pages

Detection of miRNA targets in high-throughput using the 3'LIFE assay

Author keywords

3' untranslated region; Cancer; High throughput; Issue 99; Luciferase assay; MicroRNA; Molecular biology; Post transcriptional gene regulation; Transfection

Indexed keywords

3' UNTRANSLATED REGION; LUCIFERASE; MESSENGER RNA; MICRORNA;

EID: 84941254065     PISSN: 1940087X     EISSN: None     Source Type: Journal    
DOI: 10.3791/52647     Document Type: Article
Times cited : (6)

References (33)
  • 1
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel, D. P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 116, (2), 281-297 (2004).
    • (2004) Cell , vol.116 , Issue.2 , pp. 281-297
    • Bartel, D.P.1
  • 2
    • 0034597777 scopus 로고    scopus 로고
    • Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA
    • Pasquinelli, A. E., et al. Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature. 408, (6808), 86-89 (2000).
    • (2000) Nature , vol.408 , Issue.6808 , pp. 86-89
    • Pasquinelli, A.E.1
  • 4
    • 39749140336 scopus 로고    scopus 로고
    • MicroRNA regulation of cell lineages in mouse and human embryonic stem cells
    • Ivey, K. N., et al. MicroRNA regulation of cell lineages in mouse and human embryonic stem cells. Cell Stem Cell. 2, (3), 219-229 (2008).
    • (2008) Cell Stem Cell , vol.2 , Issue.3 , pp. 219-229
    • Ivey, K.N.1
  • 5
    • 0027751663 scopus 로고
    • The C. Elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • Lee, R. C., Feinbaum, R. L., Ambros, V. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell. 75, (5), 843-854 (1993).
    • (1993) Cell , vol.75 , Issue.5 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 6
    • 22044458072 scopus 로고    scopus 로고
    • MicroRNA expression in zebrafish embryonic development
    • Wienholds, E., et al. MicroRNA expression in zebrafish embryonic development. Science. 309, (5732), 310-311 (2005).
    • (2005) Science , vol.309 , Issue.5732 , pp. 310-311
    • Wienholds, E.1
  • 7
    • 33751011053 scopus 로고    scopus 로고
    • MicroRNA expression during chick embryo development
    • Darnell, D. K., et al. MicroRNA expression during chick embryo development. Dev Dyn. 235, (11), 3156-3165 (2006).
    • (2006) Dev Dyn , vol.235 , Issue.11 , pp. 3156-3165
    • Darnell, D.K.1
  • 8
    • 7944232720 scopus 로고    scopus 로고
    • RNA and microRNAs in fragile X mental retardation
    • Jin, P., Alisch, R. S., Warren, S. T. RNA and microRNAs in fragile X mental retardation. Nat Cell Biol. 6, (11), 1048-1053 (2004).
    • (2004) Nat Cell Biol , vol.6 , Issue.11 , pp. 1048-1053
    • Jin, P.1    Alisch, R.S.2    Warren, S.T.3
  • 9
    • 34548537573 scopus 로고    scopus 로고
    • A MicroRNA feedback circuit in midbrain dopamine neurons
    • Kim, J., et al. A MicroRNA feedback circuit in midbrain dopamine neurons. Science. 317, (5842), 1220-1224 (2007).
    • (2007) Science , vol.317 , Issue.5842 , pp. 1220-1224
    • Kim, J.1
  • 10
    • 9144270691 scopus 로고    scopus 로고
    • A pancreatic islet-specific microRNA regulates insulin secretion
    • Poy, M. N., et al. A pancreatic islet-specific microRNA regulates insulin secretion. Nature. 432, (7014), 226-230 (2004).
    • (2004) Nature , vol.432 , Issue.7014 , pp. 226-230
    • Poy, M.N.1
  • 11
    • 33750370444 scopus 로고    scopus 로고
    • MicroRNA signatures in human cancers
    • Calin, G. A., Croce, C. M. MicroRNA signatures in human cancers. Nature Reviews Cancer. 6, (11), 857-866 (2006).
    • (2006) Nature Reviews Cancer , vol.6 , Issue.11 , pp. 857-866
    • Calin, G.A.1    Croce, C.M.2
  • 12
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman, R. C., Farh, K. K., Burge, C. B., Bartel, D. P. Most mammalian mRNAs are conserved targets of microRNAs. Genome Res. 19, (1), 92-105 (2009).
    • (2009) Genome Res , vol.19 , Issue.1 , pp. 92-105
    • Friedman, R.C.1    Farh, K.K.2    Burge, C.B.3    Bartel, D.P.4
  • 13
    • 84883579190 scopus 로고    scopus 로고
    • DIANA-microT web server v5.0: Service integration into miRNA functional analysis workflows
    • (Web Server issue)
    • Paraskevopoulou, M. D., et al. DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. Nucleic Acids Res. 41, (Web Server issue), W169-W173 (2013).
    • (2013) Nucleic Acids Res , vol.41 , pp. W169-W173
    • Paraskevopoulou, M.D.1
  • 14
    • 20944450160 scopus 로고    scopus 로고
    • Combinatorial microRNA target predictions
    • Krek, A., et al. Combinatorial microRNA target predictions. Nat Genet. 37, (5), 495-500 (2005).
    • (2005) Nat Genet , vol.37 , Issue.5 , pp. 495-500
    • Krek, A.1
  • 15
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: Target recognition and regulatory functions
    • Bartel, D. P. MicroRNAs: target recognition and regulatory functions. Cell. 136, (2), 215-233 (2009).
    • (2009) Cell , vol.136 , Issue.2 , pp. 215-233
    • Bartel, D.P.1
  • 16
    • 0942301280 scopus 로고    scopus 로고
    • The C. Elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3'UTR
    • Vella, M. C., Choi, E. Y., Lin, S. Y., Reinert, K., Slack, F. J. The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3'UTR. Genes Dev. 18, (2), 132-137 (2004).
    • (2004) Genes Dev , vol.18 , Issue.2 , pp. 132-137
    • Vella, M.C.1    Choi, E.Y.2    Lin, S.Y.3    Reinert, K.4    Slack, F.J.5
  • 17
    • 69949098536 scopus 로고    scopus 로고
    • MiR-24 Inhibits cell proliferation by targeting E2F2, MYC, and other cell-cycle genes via binding to 'seedless' 3'UTR microRNA recognition elements
    • Lal, A., et al. miR-24 Inhibits cell proliferation by targeting E2F2, MYC, and other cell-cycle genes via binding to 'seedless' 3'UTR microRNA recognition elements. Molecular Cell. 35, (5), 610-625 (2009).
    • (2009) Molecular Cell , vol.35 , Issue.5 , pp. 610-625
    • Lal, A.1
  • 18
    • 78649857180 scopus 로고    scopus 로고
    • NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans
    • Cevec, M., Thibaudeau, C., Plavec, J. N. M. R. NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans. Nucleic Acids Res. 38, (21), 7814-7821 (1093).
    • Nucleic Acids Res , vol.38 , Issue.21 , pp. 7814-7821
    • Cevec, M.1    Thibaudeau, C.2    Plavec, J.3
  • 19
    • 77955475953 scopus 로고    scopus 로고
    • Expanding the microRNA targeting code: Functional sites with centered pairing
    • Shin, C., et al. Expanding the microRNA targeting code: functional sites with centered pairing. Molecular Cell. 38, (6), 789-802 (2010).
    • (2010) Molecular Cell , vol.38 , Issue.6 , pp. 789-802
    • Shin, C.1
  • 20
    • 79960879305 scopus 로고    scopus 로고
    • MicroRNA-96 directly inhibits gamma-globin expression in human erythropoiesis
    • Azzouzi, I., et al. MicroRNA-96 directly inhibits gamma-globin expression in human erythropoiesis. PLoS One. 6, (7), e22838 (2011).
    • (2011) Plos One , vol.6 , Issue.7 , pp. e22838
    • Azzouzi, I.1
  • 21
    • 80055000875 scopus 로고    scopus 로고
    • MiR-193b Regulates Mcl-1 in Melanoma
    • Chen, J., et al. miR-193b Regulates Mcl-1 in Melanoma. Am J Pathol. 179, (5), 2162-2168 (2011).
    • (2011) Am J Pathol , vol.179 , Issue.5 , pp. 2162-2168
    • Chen, J.1
  • 22
    • 84857955708 scopus 로고    scopus 로고
    • An alternative mode of microRNA target recognition
    • Chi, S. W., Hannon, G. J., Darnell, R. B. An alternative mode of microRNA target recognition. Nat Struct Mol Biol. 19, (3), 321-327 (1038).
    • Nat Struct Mol Biol , vol.19 , Issue.3 , pp. 321-327
    • Chi, S.W.1    Hannon, G.J.2    Darnell, R.B.3
  • 23
    • 84857468335 scopus 로고    scopus 로고
    • MicroRNAs targeting oncogenes are down-regulated in pancreatic malignant transformation from benign tumors
    • Jiao, L. R., et al. MicroRNAs targeting oncogenes are down-regulated in pancreatic malignant transformation from benign tumors. PLoS One. 7, (2), e32068 (2012).
    • (2012) Plos One , vol.7 , Issue.2 , pp. e32068
    • Jiao, L.R.1
  • 25
    • 77954847055 scopus 로고    scopus 로고
    • The landscape of C. Elegans 3'UTRs
    • Mangone, M., et al. The landscape of C. elegans 3'UTRs. Science. 329, (5990), 432-435 (2010).
    • (2010) Science , vol.329 , Issue.5990 , pp. 432-435
    • Mangone, M.1
  • 26
    • 84864580697 scopus 로고    scopus 로고
    • A-to-I editing of microRNAs in the mammalian brain increases during development
    • Ekdahl, Y., Farahani, H. S., Behm, M., Lagergren, J., Ohman, M. A-to-I editing of microRNAs in the mammalian brain increases during development. Genome Res. 22, (8), 1477-1487 (2012).
    • (2012) Genome Res , vol.22 , Issue.8 , pp. 1477-1487
    • Ekdahl, Y.1    Farahani, H.S.2    Behm, M.3    Lagergren, J.4    Ohman, M.5
  • 27
    • 84898814417 scopus 로고    scopus 로고
    • Gene expression regulation mediated through reversible m(6)A RNA methylation
    • Fu, Y., Dominissini, D., Rechavi, G., He, C. Gene expression regulation mediated through reversible m(6)A RNA methylation. Nat Rev Genet. 15, (5), 293-306 (2014).
    • (2014) Nat Rev Genet , vol.15 , Issue.5 , pp. 293-306
    • Fu, Y.1    Dominissini, D.2    Rechavi, G.3    He, C.4
  • 28
    • 84879930668 scopus 로고    scopus 로고
    • Large-scale screens of miRNA-mRNA interactions unveiled that the 3'UTR of a gene is targeted by multiple miRNAs
    • Zhou, P., et al. Large-scale screens of miRNA-mRNA interactions unveiled that the 3'UTR of a gene is targeted by multiple miRNAs. Plos One. 8, (7), e68204 (2013).
    • (2013) Plos One , vol.8 , Issue.7 , pp. e68204
    • Zhou, P.1
  • 29
    • 0034660683 scopus 로고    scopus 로고
    • A noncommercial dual luciferase enzyme assay system for reporter gene analysis
    • Dyer, B. W., Ferrer, F. A., Klinedinst, D. K., Rodriguez, R. A noncommercial dual luciferase enzyme assay system for reporter gene analysis. Anal Biochem. 282, (1), 158-161 (2000).
    • (2000) Anal Biochem , vol.282 , Issue.1 , pp. 158-161
    • Dyer, B.W.1    Ferrer, F.A.2    Klinedinst, D.K.3    Rodriguez, R.4
  • 30
    • 84902487531 scopus 로고    scopus 로고
    • DNASU plasmid and PSI:Biology-Materials repositories: Resources to accelerate biological research
    • Seiler, C. Y., et al. DNASU plasmid and PSI:Biology-Materials repositories: resources to accelerate biological research. Nucleic Acids Res. (2013).
    • (2013) Nucleic Acids Res
    • Seiler, C.Y.1
  • 31
    • 49949116902 scopus 로고    scopus 로고
    • The impact of microRNAs on protein output
    • Baek, D., et al. The impact of microRNAs on protein output. Nature. 455, (7209), 64-71 (2008).
    • (2008) Nature , vol.455 , Issue.7209 , pp. 64-71
    • Baek, D.1
  • 32
    • 84860324470 scopus 로고    scopus 로고
    • Roles for MicroRNAs in Conferring Robustness to Biological Processes
    • Ebert, M. S., Sharp, P. A. Roles for MicroRNAs in Conferring Robustness to Biological Processes. Cell. 149, (3), 515-524 (2012).
    • (2012) Cell , vol.149 , Issue.3 , pp. 515-524
    • Ebert, M.S.1    Sharp, P.A.2
  • 33
    • 84857400300 scopus 로고    scopus 로고
    • Biological robustness and the role of microRNAs: A network perspective
    • Pelaez, N., Carthew, R. W. Biological robustness and the role of microRNAs: a network perspective. Current Topics in Developmental Biology. 99, 237-255 (2012).
    • (2012) Current Topics in Developmental Biology , vol.99 , pp. 237-255
    • Pelaez, N.1    Carthew, R.W.2


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