-
1
-
-
0002471692
-
Ty1 and Ty5 of Saccharomyces cerevisiae
-
Craig,NL, Craigie,R, Gellert,M and Lambowitz,AM (eds). ASM Press, Washington, DC
-
Voytas,D.F. and Boeke,J.D. (2002) Ty1 and Ty5 of Saccharomyces cerevisiae. In: Craig,NL, Craigie,R, Gellert,M and Lambowitz,AM (eds). Mobile DNA II. ASM Press, Washington, DC, pp. 614-630.
-
(2002)
Mobile DNA II
, pp. 614-630
-
-
Voytas, D.F.1
Boeke, J.D.2
-
2
-
-
84962243323
-
The Ty1 LTR-retrotransposon of budding yeast
-
Curcio,M.J., Lutz,S. and Lesage,P. (2015) The Ty1 LTR-retrotransposon of budding yeast. Microbiol. Spectr., 3, 1-35.
-
(2015)
Microbiol. Spectr.
, vol.3
, pp. 1-35
-
-
Curcio, M.J.1
Lutz, S.2
Lesage, P.3
-
3
-
-
0009902261
-
RNA from the yeast transposable element Ty1 has both ends in the direct repeats, a structure similar to retrovirus RNA
-
Elder,R.T., Loh,E.Y. and Davis,R.W. (1983) RNA from the yeast transposable element Ty1 has both ends in the direct repeats, a structure similar to retrovirus RNA. Proc. Natl. Acad. Sci. U.S.A., 80, 2432-2436.
-
(1983)
Proc. Natl. Acad. Sci. U.S.A.
, vol.80
, pp. 2432-2436
-
-
Elder, R.T.1
Loh, E.Y.2
Davis, R.W.3
-
4
-
-
0033761179
-
The genomic RNA in Ty1 virus-like particles is dimeric
-
Feng,Y.X., Moore,S.P., Garfinkel,D.J. and Rein,A. (2000) The genomic RNA in Ty1 virus-like particles is dimeric. J. Virol., 74, 10819-10821.
-
(2000)
J. Virol.
, vol.74
, pp. 10819-10821
-
-
Feng, Y.X.1
Moore, S.P.2
Garfinkel, D.J.3
Rein, A.4
-
5
-
-
0025303605
-
Ribosomal frameshifting in the yeast retrotransposon Ty: TRNAs induce slippage on a 7 nucleotide minimal site
-
Belcourt,M.F. and Farabaugh,P.J. (1990) Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site. Cell, 62, 339-352.
-
(1990)
Cell
, vol.62
, pp. 339-352
-
-
Belcourt, M.F.1
Farabaugh, P.J.2
-
6
-
-
0023991350
-
Functional organization of the retrotransposon Ty from Saccharomyces cerevisiae: Ty protease is required for transposition
-
Youngren,S.D., Boeke,J.D., Sanders,N.J. and Garfinkel,D.J. (1988) Functional organization of the retrotransposon Ty from Saccharomyces cerevisiae: Ty protease is required for transposition. Mol. Cell. Biol., 8, 1421-1431.
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 1421-1431
-
-
Youngren, S.D.1
Boeke, J.D.2
Sanders, N.J.3
Garfinkel, D.J.4
-
7
-
-
0029879536
-
Integration of the yeast retrotransposon Ty1 is targeted to regions upstream of genes transcribed by RNA polymerase III
-
Devine,S.E. and Boeke,J.D. (1996) Integration of the yeast retrotransposon Ty1 is targeted to regions upstream of genes transcribed by RNA polymerase III. Genes Dev., 10, 620-633.
-
(1996)
Genes Dev.
, vol.10
, pp. 620-633
-
-
Devine, S.E.1
Boeke, J.D.2
-
8
-
-
0001118596
-
Synthesis, assembly, and processing of viral proteins
-
Coffin,JM, Hughes,SH and Varmus,HE (eds). Cold Spring Harbor, NY
-
Swanstrom,R. and Wills,J.W. (1997) Synthesis, assembly, and processing of viral proteins. In: Coffin,JM, Hughes,SH and Varmus,HE (eds). Retroviruses. Cold Spring Harbor, NY, pp. 263-334.
-
(1997)
Retroviruses.
, pp. 263-334
-
-
Swanstrom, R.1
Wills, J.W.2
-
9
-
-
84875694561
-
The foamy virus Gag proteins: What makes them different?
-
Mullers,E. (2013) The foamy virus Gag proteins: what makes them different? Viruses, 5, 1023-1041.
-
(2013)
Viruses
, vol.5
, pp. 1023-1041
-
-
Mullers, E.1
-
10
-
-
78751663443
-
Features, processing states, and heterologous protein interactions in the modulation of the retroviral nucleocapsid protein function
-
Mirambeau,G., Lyonnais,S. and Gorelick,R.J. (2010) Features, processing states, and heterologous protein interactions in the modulation of the retroviral nucleocapsid protein function. RNA Biol., 7, 724-734.
-
(2010)
RNA Biol.
, vol.7
, pp. 724-734
-
-
Mirambeau, G.1
Lyonnais, S.2
Gorelick, R.J.3
-
11
-
-
33845608055
-
Characterization of a nucleocapsid-like region and of two distinct primer tRNALys,2 binding sites in the endogenous retrovirus Gypsy
-
Gabus,C., Ivanyi-Nagy,R., Depollier,J., Bucheton,A., Pelisson,A. and Darlix,J.L. (2006) Characterization of a nucleocapsid-like region and of two distinct primer tRNALys,2 binding sites in the endogenous retrovirus Gypsy. Nucleic Acids Res., 34, 5764-5777.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 5764-5777
-
-
Gabus, C.1
Ivanyi-Nagy, R.2
Depollier, J.3
Bucheton, A.4
Pelisson, A.5
Darlix, J.L.6
-
12
-
-
39049131090
-
RNA chaperones, RNA annealers and RNA helicases
-
Rajkowitsch,L., Chen,D., Stampfl,S., Semrad,K., Waldsich,C., Mayer,O., Jantsch,M.F., Konrat,R., Blasi,U. and Schroeder,R. (2007) RNA chaperones, RNA annealers and RNA helicases. RNA Biol., 4, 118-130.
-
(2007)
RNA Biol.
, vol.4
, pp. 118-130
-
-
Rajkowitsch, L.1
Chen, D.2
Stampfl, S.3
Semrad, K.4
Waldsich, C.5
Mayer, O.6
Jantsch, M.F.7
Konrat, R.8
Blasi, U.9
Schroeder, R.10
-
13
-
-
33750016312
-
Rapid kinetics of protein-nucleic acid interaction is a major component of HIV-1 nucleocapsid protein's nucleic acid chaperone function
-
Cruceanu,M., Gorelick,R.J., Musier-Forsyth,K., Rouzina,I. and Williams,M.C. (2006) Rapid kinetics of protein-nucleic acid interaction is a major component of HIV-1 nucleocapsid protein's nucleic acid chaperone function. J. Mol. Biol., 363, 867-877.
-
(2006)
J. Mol. Biol.
, vol.363
, pp. 867-877
-
-
Cruceanu, M.1
Gorelick, R.J.2
Musier-Forsyth, K.3
Rouzina, I.4
Williams, M.C.5
-
14
-
-
33750830512
-
Transmission electron microscopy reveals an optimal HIV-1 nucleocapsid aggregation with single-stranded nucleic acids and the mature HIV-1 nucleocapsid protein
-
Mirambeau,G., Lyonnais,S., Coulaud,D., Hameau,L., Lafosse,S., Jeusset,J., Justome,A., Delain,E., Gorelick,R.J. and Le Cam,E. (2006) Transmission electron microscopy reveals an optimal HIV-1 nucleocapsid aggregation with single-stranded nucleic acids and the mature HIV-1 nucleocapsid protein. J. Mol. Biol., 364, 496-511.
-
(2006)
J. Mol. Biol.
, vol.364
, pp. 496-511
-
-
Mirambeau, G.1
Lyonnais, S.2
Coulaud, D.3
Hameau, L.4
Lafosse, S.5
Jeusset, J.6
Justome, A.7
Delain, E.8
Gorelick, R.J.9
Le Cam, E.10
-
15
-
-
0036307597
-
HIV-1 nucleocapsid protein as a nucleic acid chaperone: Spectroscopic study of its helix-destabilizing properties, structural binding specificity, and annealing activity
-
Urbaneja,M.A.,Wu,M., Casas-Finet,J.R. and Karpel,R.L. (2002) HIV-1 nucleocapsid protein as a nucleic acid chaperone: spectroscopic study of its helix-destabilizing properties, structural binding specificity, and annealing activity. J. Mol. Biol., 318, 749-764.
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 749-764
-
-
Urbaneja, M.A.1
Wu, M.2
Casas-Finet, J.R.3
Karpel, R.L.4
-
16
-
-
0029974928
-
A critical proteolytic cleavage site near the C terminus of the yeast retrotransposon Ty1 Gag protein
-
Merkulov,G.V., Swiderek,K.M., Brachmann,C.B. and Boeke,J.D. (1996) A critical proteolytic cleavage site near the C terminus of the yeast retrotransposon Ty1 Gag protein. J. Virol., 70, 5548-5556.
-
(1996)
J. Virol.
, vol.70
, pp. 5548-5556
-
-
Merkulov, G.V.1
Swiderek, K.M.2
Brachmann, C.B.3
Boeke, J.D.4
-
17
-
-
0028789680
-
Analysis of TYA protein regions necessary for formation of the Ty1 virus-like particle structure
-
Brookman,J.L., Stott,A.J., Cheeseman,P.J., Adamson,C.S., Holmes,D., Cole,J. and Burns,N.R. (1995) Analysis of TYA protein regions necessary for formation of the Ty1 virus-like particle structure. Virology, 212, 69-76.
-
(1995)
Virology
, vol.212
, pp. 69-76
-
-
Brookman, J.L.1
Stott, A.J.2
Cheeseman, P.J.3
Adamson, C.S.4
Holmes, D.5
Cole, J.6
Burns, N.R.7
-
18
-
-
0029805177
-
Structural determinants within the subunit protein of Ty1 virus-like particles
-
Martin-Rendon,E.,Marfany,G., Wilson,S., Ferguson,D.J.P., Kingsman,S.M. and Kingsman,A.J. (1996) Structural determinants within the subunit protein of Ty1 virus-like particles. Mol. Microbiol., 22, 667-679.
-
(1996)
Mol. Microbiol.
, vol.22
, pp. 667-679
-
-
Martin-Rendon, E.1
Marfany, G.2
Wilson, S.3
Ferguson, D.J.P.4
Kingsman, S.M.5
Kingsman, A.J.6
-
19
-
-
0036854310
-
Genes of the Pseudoviridae (Ty1/copia retrotransposons)
-
Peterson-Burch,B.D. and Voytas,D.F. (2002) Genes of the Pseudoviridae (Ty1/copia retrotransposons). Mol. Biol. Evol., 19, 1832-1845.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1832-1845
-
-
Peterson-Burch, B.D.1
Voytas, D.F.2
-
20
-
-
0036133220
-
A nucleocapsid functionality contained within the amino terminus of the Ty1 protease that is distinct and separable from proteolytic activity
-
Lawler,J.F., Merkulov,G.V. and Boeke,J.D. (2002) A nucleocapsid functionality contained within the amino terminus of the Ty1 protease that is distinct and separable from proteolytic activity. J. Virol., 76, 346-354.
-
(2002)
J. Virol.
, vol.76
, pp. 346-354
-
-
Lawler, J.F.1
Merkulov, G.V.2
Boeke, J.D.3
-
21
-
-
0034705568
-
The GAG-like protein of the yeast Ty1 retrotransposon contains a nucleic acid chaperone domain analogous to retroviral nucleocapsid proteins
-
Cristofari,G., Ficheux,D. and Darlix,J.L. (2000) The GAG-like protein of the yeast Ty1 retrotransposon contains a nucleic acid chaperone domain analogous to retroviral nucleocapsid proteins. J. Biol. Chem., 275, 19210-19217.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 19210-19217
-
-
Cristofari, G.1
Ficheux, D.2
Darlix, J.L.3
-
22
-
-
84924778309
-
A trans-dominant form of Gag restricts Ty1 retrotransposition and mediates copy number control
-
Saha,A., Mitchell,J.A., Nishida,Y., Hildreth,J.E., Ariberre,J.A., Gilbert,W.A. and Garfinkel,D.J. (2015) A trans-dominant form of Gag restricts Ty1 retrotransposition and mediates copy number control. J. Virol., 89, 3922-3938.
-
(2015)
J. Virol.
, vol.89
, pp. 3922-3938
-
-
Saha, A.1
Mitchell, J.A.2
Nishida, Y.3
Hildreth, J.E.4
Ariberre, J.A.5
Gilbert, W.A.6
Garfinkel, D.J.7
-
23
-
-
84859138863
-
Endogenous retroviruses of sheep: A model system for understanding physiological adaptation to an evolving ruminant genome
-
Spencer,T.E. and Palmarini,M. (2012) Endogenous retroviruses of sheep: a model system for understanding physiological adaptation to an evolving ruminant genome. J. Reprod. Dev., 58, 33-37.
-
(2012)
J. Reprod. Dev.
, vol.58
, pp. 33-37
-
-
Spencer, T.E.1
Palmarini, M.2
-
24
-
-
84887511175
-
Capsid-binding retrovirus restriction factors: Discovery, restriction specificity and implications for the development of novel therapeutics
-
Sanz-Ramos,M. and Stoye,J.P. (2013) Capsid-binding retrovirus restriction factors: discovery, restriction specificity and implications for the development of novel therapeutics. J. Gen. Virol., 94, 2587-2598.
-
(2013)
J. Gen. Virol.
, vol.94
, pp. 2587-2598
-
-
Sanz-Ramos, M.1
Stoye, J.P.2
-
25
-
-
0025994140
-
Guide to yeast genetics and molecular biology
-
Guthrie,C. and Fink,G.R. (1991) Guide to yeast genetics and molecular biology. Methods Enzymol., 194, 1-863.
-
(1991)
Methods Enzymol.
, vol.194
, pp. 1-863
-
-
Guthrie, C.1
Fink, G.R.2
-
26
-
-
67649999881
-
Sequence of the yeast protein expression plasmid pEG(KT)
-
Pierce,B.D. and Wendland,B. (2009) Sequence of the yeast protein expression plasmid pEG(KT). Yeast, 26, 349-353.
-
(2009)
Yeast
, vol.26
, pp. 349-353
-
-
Pierce, B.D.1
Wendland, B.2
-
27
-
-
0026082573
-
Single-step selection for Ty1 element retrotransposition
-
Curcio,M.J. and Garfinkel,D.J. (1991) Single-step selection for Ty1 element retrotransposition. Proc. Natl. Acad. Sci. U.S.A., 88, 936-940.
-
(1991)
Proc. Natl. Acad. Sci. U.S.A.
, vol.88
, pp. 936-940
-
-
Curcio, M.J.1
Garfinkel, D.J.2
-
28
-
-
0026572317
-
Involvement of cDNA in homologous recombination between Ty elements in Saccharomyces cerevisiae
-
Melamed,C., Nevo,Y. and Kupiec,M. (1992) Involvement of cDNA in homologous recombination between Ty elements in Saccharomyces cerevisiae. Mol. Cell. Biol., 12, 1613-1620.
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 1613-1620
-
-
Melamed, C.1
Nevo, Y.2
Kupiec, M.3
-
29
-
-
0027939848
-
Efficient homologous recombination of Ty1 element cDNA when integration is blocked
-
Sharon,G., Burkett,T.J. and Garfinkel,D.J. (1994) Efficient homologous recombination of Ty1 element cDNA when integration is blocked. Mol. Cell. Biol., 14, 6540-6551.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 6540-6551
-
-
Sharon, G.1
Burkett, T.J.2
Garfinkel, D.J.3
-
30
-
-
0141455106
-
Post-transcriptional cosuppression of Ty1 retrotransposition
-
Garfinkel,D.J., Nyswaner,K., Wang,J. and Cho,J.Y. (2003) Post-transcriptional cosuppression of Ty1 retrotransposition. Genetics, 165, 83-99.
-
(2003)
Genetics
, vol.165
, pp. 83-99
-
-
Garfinkel, D.J.1
Nyswaner, K.2
Wang, J.3
Cho, J.Y.4
-
31
-
-
13944254316
-
Identification and characterization of critical cis-acting sequences within the yeast Ty1 retrotransposon
-
Bolton,E.C., Coombes,C., Eby,Y., Cardell,M. and Boeke,J.D. (2005) Identification and characterization of critical cis-acting sequences within the yeast Ty1 retrotransposon. RNA, 11, 308-322.
-
(2005)
RNA
, vol.11
, pp. 308-322
-
-
Bolton, E.C.1
Coombes, C.2
Eby, Y.3
Cardell, M.4
Boeke, J.D.5
-
32
-
-
84874304357
-
Retrotransposon Ty1 RNA contains a 5-terminal long-range pseudoknot required for efficient reverse transcription
-
Huang,Q., Purzycka,K.J., Lusvarghi,S., Li,D., Legrice,S.F. and Boeke,J.D. (2013) Retrotransposon Ty1 RNA contains a 5-terminal long-range pseudoknot required for efficient reverse transcription. RNA, 19, 320-332.
-
(2013)
RNA
, vol.19
, pp. 320-332
-
-
Huang, Q.1
Purzycka, K.J.2
Lusvarghi, S.3
Li, D.4
Legrice, S.F.5
Boeke, J.D.6
-
33
-
-
84896711061
-
Visualizing the ai5gamma group IIB intron
-
Somarowthu,S., Legiewicz,M., Keating,K.S. and Pyle,A.M. (2014) Visualizing the ai5gamma group IIB intron. Nucleic Acids Res., 42, 1947-1958.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 1947-1958
-
-
Somarowthu, S.1
Legiewicz, M.2
Keating, K.S.3
Pyle, A.M.4
-
34
-
-
80052506027
-
The in vitro loose dimer structure and rearrangements of the HIV-2 leader RNA
-
Purzycka,K.J., Pachulska-Wieczorek,K. and Adamiak,R.W. (2011) The in vitro loose dimer structure and rearrangements of the HIV-2 leader RNA. Nucleic Acids Res., 39, 7234-7248.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 7234-7248
-
-
Purzycka, K.J.1
Pachulska-Wieczorek, K.2
Adamiak, R.W.3
-
35
-
-
84871734472
-
Exploring Ty1 retrotransposon RNA structure within virus-like particles
-
Purzycka,K.J., Legiewicz,M., Matsuda,E., Eizentstat,L.D., Lusvarghi,S., Saha,A., Le Grice,S.F. and Garfinkel,D.J. (2013) Exploring Ty1 retrotransposon RNA structure within virus-like particles. Nucleic Acids Res., 41, 463-473.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 463-473
-
-
Purzycka, K.J.1
Legiewicz, M.2
Matsuda, E.3
Eizentstat, L.D.4
Lusvarghi, S.5
Saha, A.6
Le Grice, S.F.7
Garfinkel, D.J.8
-
36
-
-
34250871549
-
Ty3 capsid mutations reveal early and late functions of the amino-terminal domain
-
Larsen,L.S., Zhang,M., Beliakova-Bethell,N., Bilanchone,V., Lamsa,A., Nagashima,K., Najdi,R., Kosaka,K., Kovacevic,V., Cheng,J. et al. (2007) Ty3 capsid mutations reveal early and late functions of the amino-terminal domain. J. Virol., 81, 6957-6972.
-
(2007)
J. Virol.
, vol.81
, pp. 6957-6972
-
-
Larsen, L.S.1
Zhang, M.2
Beliakova-Bethell, N.3
Bilanchone, V.4
Lamsa, A.5
Nagashima, K.6
Najdi, R.7
Kosaka, K.8
Kovacevic, V.9
Cheng, J.10
-
37
-
-
77951489100
-
5 to 3 mRNA decay factors colocalize with Ty1 gag and human APOBEC3G and promote Ty1 retrotransposition
-
Dutko,J.A., Kenny,A.E., Gamache,E.R. and Curcio,M.J. (2010) 5 to 3 mRNA decay factors colocalize with Ty1 gag and human APOBEC3G and promote Ty1 retrotransposition. J. Virol., 84, 5052-5066.
-
(2010)
J. Virol.
, vol.84
, pp. 5052-5066
-
-
Dutko, J.A.1
Kenny, A.E.2
Gamache, E.R.3
Curcio, M.J.4
-
38
-
-
0026636672
-
Posttranslational control of Ty1 retrotransposition occurs at the level of protein processing
-
Curcio,M.J. and Garfinkel,D.J. (1992) Posttranslational control of Ty1 retrotransposition occurs at the level of protein processing. Mol. Cell. Biol., 12, 2813-2825.
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 2813-2825
-
-
Curcio, M.J.1
Garfinkel, D.J.2
-
39
-
-
36949006066
-
XtalPred: A web server for prediction of protein crystallizability
-
Slabinski,L., Jaroszewski,L., Rychlewski,L.,Wilson,I.A., Lesley,S.A. and Godzik,A. (2007) XtalPred: a web server for prediction of protein crystallizability. Bioinformatics, 23, 3403-3405.
-
(2007)
Bioinformatics
, vol.23
, pp. 3403-3405
-
-
Slabinski, L.1
Jaroszewski, L.2
Rychlewski, L.3
Wilson, I.A.4
Lesley, S.A.5
Godzik, A.6
-
40
-
-
0029894292
-
A novel epitope tag system to study protein targeting and organelle biogenesis in Trypanosoma brucei
-
Bastin,P., Bagherzadeh,Z.,Matthews,K.R. and Gull,K. (1996) A novel epitope tag system to study protein targeting and organelle biogenesis in Trypanosoma brucei. Mol. Biochem. Parasitol., 77, 235-239.
-
(1996)
Mol. Biochem. Parasitol.
, vol.77
, pp. 235-239
-
-
Bastin, P.1
Bagherzadeh, Z.2
Matthews, K.R.3
Gull, K.4
-
41
-
-
84901035187
-
Expression and purification of soluble recombinant full length HIV-1 Pr55Gag protein in Escherichia coli
-
McKinstry,W.J., Hijnen,M., Tanwar,H.S., Sparrow,L.G., Nagarajan,S., Pham,S.T. and Mak,J. (2014) Expression and purification of soluble recombinant full length HIV-1 Pr55Gag protein in Escherichia coli. Protein Expr. Purif., 100, 10-18.
-
(2014)
Protein Expr. Purif.
, vol.100
, pp. 10-18
-
-
McKinstry, W.J.1
Hijnen, M.2
Tanwar, H.S.3
Sparrow, L.G.4
Nagarajan, S.5
Pham, S.T.6
Mak, J.7
-
42
-
-
80051757198
-
Secondary structure and the role in translation initiation of the 5-terminal region of p53 mRNA
-
Blaszczyk,L. and Ciesiolka,J. (2011) Secondary structure and the role in translation initiation of the 5-terminal region of p53 mRNA. Biochemistry, 50, 7080-7092.
-
(2011)
Biochemistry
, vol.50
, pp. 7080-7092
-
-
Blaszczyk, L.1
Ciesiolka, J.2
-
43
-
-
78651468719
-
Cap-assisted internal initiation of translation of histone H4
-
Martin,F., Barends,S., Jaeger,S., Schaeffer,L., Prongidi-Fix,L. and Eriani,G. (2011) Cap-assisted internal initiation of translation of histone H4. Mol. Cell, 41, 197-209.
-
(2011)
Mol. Cell
, vol.41
, pp. 197-209
-
-
Martin, F.1
Barends, S.2
Jaeger, S.3
Schaeffer, L.4
Prongidi-Fix, L.5
Eriani, G.6
-
44
-
-
0032032070
-
Properties and growth mechanism of the ordered aggregation of a model RNA by the HIV-1 nucleocapsid protein: An electron microscopy investigation
-
Le Cam,E., Coulaud,D., Delain,E., Petitjean,P., Roques,B.P., Gerard,D., Stoylova,E., Vuilleumier,C., Stoylov,S.P. and Mely,Y. (1998) Properties and growth mechanism of the ordered aggregation of a model RNA by the HIV-1 nucleocapsid protein: an electron microscopy investigation. Biopolymers, 45, 217-229.
-
(1998)
Biopolymers
, vol.45
, pp. 217-229
-
-
Le Cam, E.1
Coulaud, D.2
Delain, E.3
Petitjean, P.4
Roques, B.P.5
Gerard, D.6
Stoylova, E.7
Vuilleumier, C.8
Stoylov, S.P.9
Mely, Y.10
-
45
-
-
0031106649
-
Ordered aggregation of ribonucleic acids by the human immunodeficiency virus type 1 nucleocapsid protein
-
Stoylov,S.P., Vuilleumier,C., Stoylova,E., De Rocquigny,H., Roques,B.P., Gerard,D. and Mely,Y. (1997) Ordered aggregation of ribonucleic acids by the human immunodeficiency virus type 1 nucleocapsid protein. Biopolymers, 41, 301-312.
-
(1997)
Biopolymers
, vol.41
, pp. 301-312
-
-
Stoylov, S.P.1
Vuilleumier, C.2
Stoylova, E.3
De Rocquigny, H.4
Roques, B.P.5
Gerard, D.6
Mely, Y.7
-
46
-
-
33748769274
-
Mechanistic studies of mini-TAR RNA/DNA annealing in the absence and presence of HIV-1 nucleocapsid protein
-
Vo,M.N., Barany,G., Rouzina,I. and Musier-Forsyth,K. (2006) Mechanistic studies of mini-TAR RNA/DNA annealing in the absence and presence of HIV-1 nucleocapsid protein. J. Mol. Biol., 363, 244-261.
-
(2006)
J. Mol. Biol.
, vol.363
, pp. 244-261
-
-
Vo, M.N.1
Barany, G.2
Rouzina, I.3
Musier-Forsyth, K.4
-
47
-
-
84928107125
-
Similarities and differences in the nucleic acid chaperone activity of HIV-2 and HIV-1 nucleocapsid proteins in vitro
-
Pachulska-Wieczorek,K., Stefaniak,A.K. and Purzycka,K.J. (2014) Similarities and differences in the nucleic acid chaperone activity of HIV-2 and HIV-1 nucleocapsid proteins in vitro. Retrovirology, 11, 54.
-
(2014)
Retrovirology
, vol.11
, pp. 54
-
-
Pachulska-Wieczorek, K.1
Stefaniak, A.K.2
Purzycka, K.J.3
-
48
-
-
0021213885
-
Temperature effects on the rate of Ty transposition
-
Paquin,C. and Williamson,V. (1984) Temperature effects on the rate of Ty transposition. Science, 226, 53-55.
-
(1984)
Science
, vol.226
, pp. 53-55
-
-
Paquin, C.1
Williamson, V.2
-
49
-
-
84895788984
-
Differential contribution of basic residues to HIV-1 nucleocapsid protein's nucleic acid chaperone function and retroviral replication
-
Wu,H., Mitra,M., Naufer,M.N., McCauley,M.J., Gorelick,R.J., Rouzina,I.,Musier-Forsyth,K. andWilliams,M.C. (2014) Differential contribution of basic residues to HIV-1 nucleocapsid protein's nucleic acid chaperone function and retroviral replication. Nucleic Acids Res., 42, 2525-2537.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 2525-2537
-
-
Wu, H.1
Mitra, M.2
Naufer, M.N.3
McCauley, M.J.4
Gorelick, R.J.5
Rouzina, I.6
Musier-Forsyth, K.7
Williams, M.C.8
-
50
-
-
23144448275
-
Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: Critical role in reverse transcription and molecular mechanism
-
Levin,J.G., Guo,J., Rouzina,I. and Musier-Forsyth,K. (2005) Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism. Prog. Nucleic Acid Res. Mol. Biol., 80, 217-286.
-
(2005)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.80
, pp. 217-286
-
-
Levin, J.G.1
Guo, J.2
Rouzina, I.3
Musier-Forsyth, K.4
-
51
-
-
78751668182
-
Role of HIV-1 nucleocapsid protein in HIV-1 reverse transcription
-
Levin,J.G., Mitra,M., Mascarenhas,A. and Musier-Forsyth,K. (2010) Role of HIV-1 nucleocapsid protein in HIV-1 reverse transcription. RNA Biol., 7, 754-774.
-
(2010)
RNA Biol.
, vol.7
, pp. 754-774
-
-
Levin, J.G.1
Mitra, M.2
Mascarenhas, A.3
Musier-Forsyth, K.4
-
52
-
-
0028113905
-
Human immunodeficiency virus nucleocapsid protein accelerates strand transfer of the terminally redundant sequences involved in reverse transcription
-
You,J.C. and McHenry,C.S. (1994) Human immunodeficiency virus nucleocapsid protein accelerates strand transfer of the terminally redundant sequences involved in reverse transcription. J. Biol. Chem., 269, 31491-31495.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 31491-31495
-
-
You, J.C.1
McHenry, C.S.2
-
53
-
-
2342564387
-
The fragile X mental retardation protein has nucleic acid chaperone properties
-
Gabus,C., Mazroui,R., Tremblay,S., Khandjian,E.W. and Darlix,J.L. (2004) The fragile X mental retardation protein has nucleic acid chaperone properties. Nucleic Acids Res., 32, 2129-2137.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 2129-2137
-
-
Gabus, C.1
Mazroui, R.2
Tremblay, S.3
Khandjian, E.W.4
Darlix, J.L.5
-
54
-
-
39449097872
-
RNA chaperoning and intrinsic disorder in the core proteins of Flaviviridae
-
Ivanyi-Nagy,R., Lavergne,J.P., Gabus,C., Ficheux,D. and Darlix,J.L. (2008) RNA chaperoning and intrinsic disorder in the core proteins of Flaviviridae. Nucleic Acids Res., 36, 712-725.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 712-725
-
-
Ivanyi-Nagy, R.1
Lavergne, J.P.2
Gabus, C.3
Ficheux, D.4
Darlix, J.L.5
-
55
-
-
45549099831
-
The HIV-1 transcriptional activator Tat has potent nucleic acid chaperoning activities in vitro
-
Kuciak,M., Gabus,C., Ivanyi-Nagy,R., Semrad,K., Storchak,R., Chaloin,O., Muller,S., Mely,Y. and Darlix,J.L. (2008) The HIV-1 transcriptional activator Tat has potent nucleic acid chaperoning activities in vitro. Nucleic Acids Res., 36, 3389-3400.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 3389-3400
-
-
Kuciak, M.1
Gabus, C.2
Ivanyi-Nagy, R.3
Semrad, K.4
Storchak, R.5
Chaloin, O.6
Muller, S.7
Mely, Y.8
Darlix, J.L.9
-
56
-
-
40049099434
-
Targeting the viral nucleocapsid protein in anti-HIV-1 therapy
-
de Rocquigny,H., Shvadchak,V., Avilov,S., Dong,C.Z., Dietrich,U., Darlix,J.L. and Mely,Y. (2008) Targeting the viral nucleocapsid protein in anti-HIV-1 therapy. Mini Rev. Med. Chem., 8, 24-35.
-
(2008)
Mini Rev. Med. Chem.
, vol.8
, pp. 24-35
-
-
De Rocquigny, H.1
Shvadchak, V.2
Avilov, S.3
Dong, C.Z.4
Dietrich, U.5
Darlix, J.L.6
Mely, Y.7
-
57
-
-
20844463873
-
Structural determinants of HIV-1 nucleocapsid protein for cTAR DNA binding and destabilization, and correlation with inhibition of self-primed DNA synthesis
-
Beltz,H., Clauss,C., Piemont,E., Ficheux,D., Gorelick,R.J., Roques,B., Gabus,C., Darlix,J.L., de Rocquigny,H. and Mely,Y. (2005) Structural determinants of HIV-1 nucleocapsid protein for cTAR DNA binding and destabilization, and correlation with inhibition of self-primed DNA synthesis. J. Mol. Biol., 348, 1113-1126.
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 1113-1126
-
-
Beltz, H.1
Clauss, C.2
Piemont, E.3
Ficheux, D.4
Gorelick, R.J.5
Roques, B.6
Gabus, C.7
Darlix, J.L.8
De Rocquigny, H.9
Mely, Y.10
-
58
-
-
53749089459
-
Retroviral nucleocapsid proteins display nonequivalent levels of nucleic acid chaperone activity
-
Stewart-Maynard,K.M., Cruceanu,M., Wang,F., Vo,M.N., Gorelick,R.J., Williams,M.C., Rouzina,I. and Musier-Forsyth,K. (2008) Retroviral nucleocapsid proteins display nonequivalent levels of nucleic acid chaperone activity. J. Virol., 82, 10129-10142.
-
(2008)
J. Virol.
, vol.82
, pp. 10129-10142
-
-
Stewart-Maynard, K.M.1
Cruceanu, M.2
Wang, F.3
Vo, M.N.4
Gorelick, R.J.5
Williams, M.C.6
Rouzina, I.7
Musier-Forsyth, K.8
-
59
-
-
59649110238
-
Effect of Mg(2+) and Na(+) on the nucleic acid chaperone activity of HIV-1 nucleocapsid protein: Implications for reverse transcription
-
Vo,M.N., Barany,G., Rouzina,I. and Musier-Forsyth,K. (2009) Effect of Mg(2+) and Na(+) on the nucleic acid chaperone activity of HIV-1 nucleocapsid protein: implications for reverse transcription. J. Mol. Biol., 386, 773-788.
-
(2009)
J. Mol. Biol.
, vol.386
, pp. 773-788
-
-
Vo, M.N.1
Barany, G.2
Rouzina, I.3
Musier-Forsyth, K.4
-
60
-
-
84880656202
-
Distinct binding interactions of HIV-1 Gag to Psi and non-Psi RNAs: Implications for viral genomic RNA packaging
-
Webb,J.A., Jones,C.P., Parent,L.J., Rouzina,I. and Musier-Forsyth,K. (2013) Distinct binding interactions of HIV-1 Gag to Psi and non-Psi RNAs: implications for viral genomic RNA packaging. RNA, 19, 1078-1088.
-
(2013)
RNA
, vol.19
, pp. 1078-1088
-
-
Webb, J.A.1
Jones, C.P.2
Parent, L.J.3
Rouzina, I.4
Musier-Forsyth, K.5
-
61
-
-
2942592157
-
Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites
-
Fahlman,R.P. and Uhlenbeck,O.C. (2004) Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites. Biochemistry, 43, 7575-7583.
-
(2004)
Biochemistry
, vol.43
, pp. 7575-7583
-
-
Fahlman, R.P.1
Uhlenbeck, O.C.2
-
62
-
-
0017146579
-
Ion effects on ligand-nucleic acid interactions
-
Record,M.T. Jr, Lohman,M.L. and De Haseth,P. (1976) Ion effects on ligand-nucleic acid interactions. J. Mol. Biol., 107, 145-158.
-
(1976)
J. Mol. Biol.
, vol.107
, pp. 145-158
-
-
Record, M.T.1
Lohman, M.L.2
De Haseth, P.3
-
63
-
-
0028908756
-
Multiple molecular determinants for retrotransposition in a primer tRNA
-
Keeney,J.B., Chapman,K.B., Lauermann,V., Voytas,D.F., Aström,S.U., von Pawel-Rammingen,U., Bystrom,A. and Boeke,J.D. (1995) Multiple molecular determinants for retrotransposition in a primer tRNA. Mol. Cell. Biol., 15, 217-226.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 217-226
-
-
Keeney, J.B.1
Chapman, K.B.2
Lauermann, V.3
Voytas, D.F.4
Aström, S.U.5
Von Pawel-Rammingen, U.6
Bystrom, A.7
Boeke, J.D.8
-
64
-
-
0027182508
-
Vectors for the inducible overexpression of glutathione S-transferase fusion proteins in yeast
-
Mitchell,D.A., Marshall,T.K. and Deschenes,R.J. (1993) Vectors for the inducible overexpression of glutathione S-transferase fusion proteins in yeast. Yeast, 9, 715-722.
-
(1993)
Yeast
, vol.9
, pp. 715-722
-
-
Mitchell, D.A.1
Marshall, T.K.2
Deschenes, R.J.3
-
65
-
-
78449253767
-
Retroviral RNA dimerization and packaging: The what, how, when, where, and why
-
Johnson,S.F. and Telesnitsky,A. (2010) Retroviral RNA dimerization and packaging: the what, how, when, where, and why. PLoS Pathog., 6, e1001007.
-
(2010)
PLoS Pathog.
, vol.6
-
-
Johnson, S.F.1
Telesnitsky, A.2
-
66
-
-
80052742721
-
Molecular mechanism of scanning and start codon selection in eukaryotes
-
Hinnebusch,A.G. (2011) Molecular mechanism of scanning and start codon selection in eukaryotes. Microbiol. Mol. Biol. Rev., 75, 434-467.
-
(2011)
Microbiol. Mol. Biol. Rev.
, vol.75
, pp. 434-467
-
-
Hinnebusch, A.G.1
-
67
-
-
0025879069
-
Eukaryotic start and stop translation sites
-
Cavener,D.R. and Ray,S.C. (1991) Eukaryotic start and stop translation sites. Nucleic Acids Res., 19, 3185-3192.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 3185-3192
-
-
Cavener, D.R.1
Ray, S.C.2
-
68
-
-
78751670345
-
Properties and functions of the nucleocapsid protein in virus assembly
-
Muriaux,D. and Darlix,J.L. (2010) Properties and functions of the nucleocapsid protein in virus assembly. RNA Biol., 7, 744-753.
-
(2010)
RNA Biol.
, vol.7
, pp. 744-753
-
-
Muriaux, D.1
Darlix, J.L.2
-
69
-
-
0028129970
-
DNA strand exchange and selective DNA annealing promoted by the human immunodeficiency virus type 1 nucleocapsid protein
-
Tsuchihashi,Z. and Brown,P.O. (1994) DNA strand exchange and selective DNA annealing promoted by the human immunodeficiency virus type 1 nucleocapsid protein. J. Virol., 68, 5863-5870.
-
(1994)
J. Virol.
, vol.68
, pp. 5863-5870
-
-
Tsuchihashi, Z.1
Brown, P.O.2
-
70
-
-
0023649679
-
The functions and relationships of Ty-VLP proteins in yeast reflect those of mammalian retroviral proteins
-
Adams,S.E., Mellor,J., Gull,K., Sim,R.B., Tuite,M.F., Kingsman,S.M. and Kingsman,A.J. (1987) The functions and relationships of Ty-VLP proteins in yeast reflect those of mammalian retroviral proteins. Cell, 49, 111-119.
-
(1987)
Cell
, vol.49
, pp. 111-119
-
-
Adams, S.E.1
Mellor, J.2
Gull, K.3
Sim, R.B.4
Tuite, M.F.5
Kingsman, S.M.6
Kingsman, A.J.7
-
71
-
-
0022340976
-
Reverse transcriptase activity and Ty RNA are associated with virus-like particles in yeast
-
Mellor,J., Malim,M., Gull,K., Tuite,M., McCready,S., Dibbayawan,T., Kingsman,S. and Kingsman,A. (1985) Reverse transcriptase activity and Ty RNA are associated with virus-like particles in yeast. Nature, 318, 583-586.
-
(1985)
Nature
, vol.318
, pp. 583-586
-
-
Mellor, J.1
Malim, M.2
Gull, K.3
Tuite, M.4
McCready, S.5
Dibbayawan, T.6
Kingsman, S.7
Kingsman, A.8
-
72
-
-
34548346898
-
Ty1 reverse transcriptase does not read through the proposed 2,5-branched retrotransposition intermediate in vitro
-
Pratico,E.D. and Silverman,S.K. (2007) Ty1 reverse transcriptase does not read through the proposed 2,5-branched retrotransposition intermediate in vitro. RNA, 13, 1528-1536.
-
(2007)
RNA
, vol.13
, pp. 1528-1536
-
-
Pratico, E.D.1
Silverman, S.K.2
-
73
-
-
0037102438
-
A 5-3 long-range interaction in Ty1 RNA controls its reverse transcription and retrotransposition
-
Cristofari,G., Bampi,C., Wilhelm,M., Wilhelm,F.X. and Darlix,J.L. (2002) A 5-3 long-range interaction in Ty1 RNA controls its reverse transcription and retrotransposition. EMBO J., 21, 4368-4379.
-
(2002)
EMBO J.
, vol.21
, pp. 4368-4379
-
-
Cristofari, G.1
Bampi, C.2
Wilhelm, M.3
Wilhelm, F.X.4
Darlix, J.L.5
-
74
-
-
39749122667
-
Ty3 nucleocapsid controls localization of particle assembly
-
Larsen,L.S., Beliakova-Bethell,N., Bilanchone,V., Zhang,M., Lamsa,A., Dasilva,R., Hatfield,G.W., Nagashima,K. and Sandmeyer,S. (2008) Ty3 nucleocapsid controls localization of particle assembly. J. Virol., 82, 2501-2514.
-
(2008)
J. Virol.
, vol.82
, pp. 2501-2514
-
-
Larsen, L.S.1
Beliakova-Bethell, N.2
Bilanchone, V.3
Zhang, M.4
Lamsa, A.5
Dasilva, R.6
Hatfield, G.W.7
Nagashima, K.8
Sandmeyer, S.9
-
75
-
-
0032541322
-
The yeast Ty3 retrotransposon contains a 5-3 bipartite primer-binding site and encodes nucleocapsid protein NCp9 functionally homologous to HIV-1 NCp7
-
Gabus,C., Ficheux,D., Rau,M., Keith,G., Sandmeyer,S. and Darlix,J.L. (1998) The yeast Ty3 retrotransposon contains a 5-3 bipartite primer-binding site and encodes nucleocapsid protein NCp9 functionally homologous to HIV-1 NCp7. EMBO J., 17, 4873-4880.
-
(1998)
EMBO J.
, vol.17
, pp. 4873-4880
-
-
Gabus, C.1
Ficheux, D.2
Rau, M.3
Keith, G.4
Sandmeyer, S.5
Darlix, J.L.6
|