-
1
-
-
0002471692
-
Ty1 and Ty5 of Saccharomyces cerevisiae
-
Craig, N.L., Craigie, R., Gellert, M. and Lambowitz, A.M. (eds) ASM Press, Washington, DC
-
Voytas, D.F. and Boeke, J.D. (2002) Ty1 and Ty5 of Saccharomyces cerevisiae. In: Craig, N.L., Craigie, R., Gellert, M. and Lambowitz, A.M. (eds), Mobile DNA II. ASM Press, Washington, DC, pp. 614-630.
-
(2002)
Mobile DNA II
, pp. 614-630
-
-
Voytas, D.F.1
Boeke, J.D.2
-
2
-
-
18944382213
-
Happy together: The life and times of Ty retrotransposons and their hosts
-
Lesage, P. and Todeschini, A. (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet. Genome Res., 110, 70-90.
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 70-90
-
-
Lesage, P.1
Todeschini, A.2
-
3
-
-
34447535540
-
Host factors that control long terminal repeat retrotransposons in Saccharomyces cerevisiae: Implications for regulation of mammalian retroviruses
-
Maxwell, P. and Curcio, M. (2007) Host factors that control long terminal repeat retrotransposons in Saccharomyces cerevisiae: implications for regulation of mammalian retroviruses. Eukaryot. Cell, 6, 1069-1080.
-
(2007)
Eukaryot. Cell
, vol.6
, pp. 1069-1080
-
-
Maxwell, P.1
Curcio, M.2
-
4
-
-
0026579205
-
Initiator methionine tRNA is essential for Ty1 transposition in yeast
-
Chapman, K., Bystrom, A. and Boeke, J. (1992) Initiator methionine tRNA is essential for Ty1 transposition in yeast. Proc. Natl Acad. Sci. USA, 89, 3236-3240.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 3236-3240
-
-
Chapman, K.1
Bystrom, A.2
Boeke, J.3
-
5
-
-
0033761179
-
The genomic RNA in Ty1 virus-like particles is dimeric
-
Feng, Y., Moore, S., Garfinkel, D. and Rein, A. (2000) The genomic RNA in Ty1 virus-like particles is dimeric. J. Virol., 74, 10819-10821.
-
(2000)
J. Virol.
, vol.74
, pp. 10819-10821
-
-
Feng, Y.1
Moore, S.2
Garfinkel, D.3
Rein, A.4
-
6
-
-
0028028054
-
Yeast Ty1 retrotransposon: The minus-strand primer binding site and a cis-acting domain of the Ty1 RNA are both important for packaging of primer tRNA inside virus-like particles
-
Wilhelm, M., Wilhelm, F.-X., Keith, G., Agoutin, B. and Heyman, T. (1994) Yeast Ty1 retrotransposon: the minus-strand primer binding site and a cis-acting domain of the Ty1 RNA are both important for packaging of primer tRNA inside virus-like particles. Nucleic Acids Res., 22, 4560-4565.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4560-4565
-
-
Wilhelm, M.1
Wilhelm, F.-X.2
Keith, G.3
Agoutin, B.4
Heyman, T.5
-
7
-
-
0034705568
-
The GAG-like protein of the yeast Ty1 retrotransposon contains a nucleic acid chaperone domain analogous to retroviral nucleocapsid proteins
-
Cristofari, G., Ficheux, D. and Darlix, J.L. (2000) The GAG-like protein of the yeast Ty1 retrotransposon contains a nucleic acid chaperone domain analogous to retroviral nucleocapsid proteins. J. Biol. Chem., 275, 19210-19217.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 19210-19217
-
-
Cristofari, G.1
Ficheux, D.2
Darlix, J.L.3
-
8
-
-
0346220021
-
In the beginning: Initiation of minus strand DNA synthesis in retroviruses and LTR-containing retrotransposons
-
Le Grice, S.F.J. (2003) In the beginning: initiation of minus strand DNA synthesis in retroviruses and LTR-containing retrotransposons. Biochemistry, 42, 14349-14355.
-
(2003)
Biochemistry
, vol.42
, pp. 14349-14355
-
-
Le Grice, S.F.J.1
-
9
-
-
0002296754
-
Revers transcriptase and generation of retroviral DNA
-
Coffin, J.M., Hughes, S.H. and Varmus, H.E. (eds) Cold Spring Harbor Laboratory Press, New York
-
Telesnitsky, A. and Goff, S.P. (1997) Revers transcriptase and generation of retroviral DNA. In: Coffin, J.M., Hughes, S.H. and Varmus, H.E. (eds), Retroviruses. Cold Spring Harbor Laboratory Press, New York, pp. 121-160.
-
(1997)
Retroviruses
, pp. 121-160
-
-
Telesnitsky, A.1
Goff, S.P.2
-
10
-
-
0036170416
-
The tRNA primer activation signal in the human immunodeficiency virus type 1 genome is important for initiation and processive elongation of reverse transcription
-
Beerens, N. and Berkhout, B. (2002) The tRNA primer activation signal in the human immunodeficiency virus type 1 genome is important for initiation and processive elongation of reverse transcription. J. Virol., 76, 2329-2339.
-
(2002)
J. Virol.
, vol.76
, pp. 2329-2339
-
-
Beerens, N.1
Berkhout, B.2
-
11
-
-
0037044823
-
Direct and indirect contributions of RNA secondary structure elements to the initiation of HIV-1 reverse transcription
-
Goldschmidt, V., Rigourd, M., Ehresmann, C., Le Grice, S.F., Ehresmann, B. and Marquet, R. (2002) Direct and indirect contributions of RNA secondary structure elements to the initiation of HIV-1 reverse transcription. J. Biol. Chem., 277, 43233-43242.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 43233-43242
-
-
Goldschmidt, V.1
Rigourd, M.2
Ehresmann, C.3
Le Grice, S.F.4
Ehresmann, B.5
Marquet, R.6
-
12
-
-
0032769389
-
Changes in Rous sarcoma virus RNA secondary structure near the primer binding site upon tRNATrp primer annealing
-
Morris, S. and Leis, J. (1999) Changes in Rous sarcoma virus RNA secondary structure near the primer binding site upon tRNATrp primer annealing. J. Virol., 73, 6307-6318.
-
(1999)
J. Virol.
, vol.73
, pp. 6307-6318
-
-
Morris, S.1
Leis, J.2
-
13
-
-
0029981558
-
Extended interactions between the primer tRNAi(Met) and genomic RNA of the yeast Ty1 retrotransposon
-
Friant, S., Heyman, T., Wilhelm, M.L. and Wilhelm, F.X. (1996) Extended interactions between the primer tRNAi(Met) and genomic RNA of the yeast Ty1 retrotransposon. Nucleic Acids Res., 24, 441-449.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 441-449
-
-
Friant, S.1
Heyman, T.2
Wilhelm, M.L.3
Wilhelm, F.X.4
-
14
-
-
0028908756
-
Multiple molecular determinants for retrotransposition in a primer tRNA
-
Keeney, J., Chapman, K., Lauermann, V., Voytas, D., Astrom, S., von Pawel-Rammingen, U., Bystrom, A. and Boeke, J. (1995) Multiple molecular determinants for retrotransposition in a primer tRNA. Mol. Cell Biol., 15, 217-226.
-
(1995)
Mol. Cell Biol.
, vol.15
, pp. 217-226
-
-
Keeney, J.1
Chapman, K.2
Lauermann, V.3
Voytas, D.4
Astrom, S.5
Von Pawel-Rammingen, U.6
Bystrom, A.7
Boeke, J.8
-
15
-
-
0037102438
-
A 5′-3′ long-range interaction in Ty1 RNA controls its reverse transcription and retrotransposition
-
Cristofari, G., Bampi, C., Wilhelm, M., Wilhelm, F.X. and Darlix, J.L. (2002) A 5′-3′ long-range interaction in Ty1 RNA controls its reverse transcription and retrotransposition. EMBO J., 21, 4368-4379.
-
(2002)
EMBO J.
, vol.21
, pp. 4368-4379
-
-
Cristofari, G.1
Bampi, C.2
Wilhelm, M.3
Wilhelm, F.X.4
Darlix, J.L.5
-
16
-
-
80051766524
-
Structural determinants and mechanism of HIV-1 genome packaging
-
Lu, K., Heng, X. and Summers, M.F. (2011) Structural determinants and mechanism of HIV-1 genome packaging. J. Mol. Biol., 410, 609-633.
-
(2011)
J. Mol. Biol.
, vol.410
, pp. 609-633
-
-
Lu, K.1
Heng, X.2
Summers, M.F.3
-
17
-
-
14844359526
-
Is HIV-1 RNA dimerization a prerequisite for packaging? Yes, no, probably?
-
Russell, R.S., Liang, C. and Wainberg, M.A. (2004) Is HIV-1 RNA dimerization a prerequisite for packaging? Yes, no, probably? Retrovirology, 1, 23.
-
(2004)
Retrovirology
, vol.1
, pp. 23
-
-
Russell, R.S.1
Liang, C.2
Wainberg, M.A.3
-
18
-
-
0026521596
-
Human immunodeficiency virus vectors for inducible expression of foreign genes
-
Buchschacher, G.L. Jr and Panganiban, A.T. (1992) Human immunodeficiency virus vectors for inducible expression of foreign genes. J. Virol., 66, 2731-2739.
-
(1992)
J. Virol.
, vol.66
, pp. 2731-2739
-
-
Buchschacher, Jr.G.L.1
Panganiban, A.T.2
-
19
-
-
0028363292
-
Mutational analysis of cis-acting packaging signals in human immunodeficiency virus type 1 RNA
-
Luban, J. and Goff, S.P. (1994) Mutational analysis of cis-acting packaging signals in human immunodeficiency virus type 1 RNA. J. Virol., 68, 3784-3793.
-
(1994)
J. Virol.
, vol.68
, pp. 3784-3793
-
-
Luban, J.1
Goff, S.P.2
-
20
-
-
13944254316
-
Identification and characterization of critical cis-acting sequences within the yeast Ty1 retrotransposon
-
Bolton, E., Coombes, C., Eby, Y., Cardell, M. and Boeke, J. (2005) Identification and characterization of critical cis-acting sequences within the yeast Ty1 retrotransposon. RNA, 11, 308-322.
-
(2005)
RNA
, vol.11
, pp. 308-322
-
-
Bolton, E.1
Coombes, C.2
Eby, Y.3
Cardell, M.4
Boeke, J.5
-
21
-
-
0025288703
-
Localization of sequences required in cis for yeast Ty1 element transposition near the long terminal repeats: Analysis of mini-Ty1 elements
-
Xu, H. and Boeke, J.D. (1990) Localization of sequences required in cis for yeast Ty1 element transposition near the long terminal repeats: analysis of mini-Ty1 elements. Mol. Cell Biol., 10, 2695-2702.
-
(1990)
Mol. Cell Biol.
, vol.10
, pp. 2695-2702
-
-
Xu, H.1
Boeke, J.D.2
-
22
-
-
40349116304
-
A cryptic unstable transcript mediates transcriptional silencing of the Ty1 retrotransposon in S. cerevisiae
-
Morillon, A. (2008) A cryptic unstable transcript mediates transcriptional silencing of the Ty1 retrotransposon in S. cerevisiae. Genes Dev., 22, 615-626.
-
(2008)
Genes Dev.
, vol.22
, pp. 615-626
-
-
Morillon, A.1
-
23
-
-
70349446101
-
Posttranslational interference of Ty1 retrotransposition by antisense RNAs
-
Matsuda, E. and Garfinkel, D.J. (2009) Posttranslational interference of Ty1 retrotransposition by antisense RNAs. Proc. Natl Acad. Sci. USA, 106, 15657-15662.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 15657-15662
-
-
Matsuda, E.1
Garfinkel, D.J.2
-
24
-
-
70350510820
-
RNAi in budding yeast
-
Drinnenberg, I.A., Weinberg, D.E., Xie, K.T., Mower, J.P., Wolfe, K.H., Fink, G.R. and Bartel, D.P. (2009) RNAi in budding yeast. Science, 326, 544-550.
-
(2009)
Science
, vol.326
, pp. 544-550
-
-
Drinnenberg, I.A.1
Weinberg, D.E.2
Xie, K.T.3
Mower, J.P.4
Wolfe, K.H.5
Fink, G.R.6
Bartel, D.P.7
-
25
-
-
16244412610
-
RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE)
-
Merino, E.J., Wilkinson, K.A., Coughlan, J.L. and Weeks, K.M. (2005) RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE). J. Am. Chem. Soc., 127, 4223-4231.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 4223-4231
-
-
Merino, E.J.1
Wilkinson, K.A.2
Coughlan, J.L.3
Weeks, K.M.4
-
26
-
-
68449092202
-
Architecture and secondary structure of an entire HIV-1 RNA genome
-
Watts, J.M., Dang, K.K., Gorelick, R.J., Leonard, C.W., Bess, J.W., Swanstrom, R., Burch, C.L. and Weeks, K.M. (2009) Architecture and secondary structure of an entire HIV-1 RNA genome. Nature, 460, 711-716.
-
(2009)
Nature
, vol.460
, pp. 711-716
-
-
Watts, J.M.1
Dang, K.K.2
Gorelick, R.J.3
Leonard, C.W.4
Bess, J.W.5
Swanstrom, R.6
Burch, C.L.7
Weeks, K.M.8
-
27
-
-
79960611669
-
Exploring RNA structural codes with SHAPE chemistry
-
Weeks, K.M. and Mauger, D.M. (2011) Exploring RNA structural codes with SHAPE chemistry. Acc. Chem. Res., 44, 1280-1291.
-
(2011)
Acc. Chem. Res.
, vol.44
, pp. 1280-1291
-
-
Weeks, K.M.1
Mauger, D.M.2
-
28
-
-
84871797602
-
Probing Retroviral and Retrotransposon Genome Structures: The "sHAPE" of things to come
-
Sztuba-Solinska, J. and Le Grice, S.F. (2012) Probing retroviral and retrotransposon genome structures: the "SHAPE" of things to come. Mol. Biol. Int., 2012, 530754.
-
(2012)
Mol. Biol. Int.
, vol.2012
, pp. 530754
-
-
Sztuba-Solinska, J.1
Le Grice, S.F.2
-
29
-
-
0024295403
-
The DNA intermediate in yeast Ty1 element transposition copurifies with virus-like particles: Cell-free Ty1 transposition
-
Eichinger, D.J. and Boeke, J.D. (1988) The DNA intermediate in yeast Ty1 element transposition copurifies with virus-like particles: cell-free Ty1 transposition. Cell, 54, 955-966.
-
(1988)
Cell
, vol.54
, pp. 955-966
-
-
Eichinger, D.J.1
Boeke, J.D.2
-
30
-
-
0022129513
-
Ty element transposition: Reverse transcriptase and virus-like particles
-
Garfinkel, D.J., Boeke, J.D. and Fink, G.R. (1985) Ty element transposition: reverse transcriptase and virus-like particles. Cell, 42, 507-517.
-
(1985)
Cell
, vol.42
, pp. 507-517
-
-
Garfinkel, D.J.1
Boeke, J.D.2
Fink, G.R.3
-
31
-
-
77951489100
-
5′ to 3′ mRNA decay factors colocalize with Ty1 gag and human APOBEC3G and promote Ty1 retrotransposition
-
Dutko, J.A., Kenny, A.E., Gamache, E.R. and Curcio, M.J. (2010) 5′ to 3′ mRNA decay factors colocalize with Ty1 gag and human APOBEC3G and promote Ty1 retrotransposition. J. Virol., 84, 5052-5066.
-
(2010)
J. Virol.
, vol.84
, pp. 5052-5066
-
-
Dutko, J.A.1
Kenny, A.E.2
Gamache, E.R.3
Curcio, M.J.4
-
32
-
-
0031741741
-
Reverse transcription of a self-primed retrotransposon requires an RNA structure similar to the U5-IR stem-loop of retroviruses
-
Lin, J.H. and Levin, H.L. (1998) Reverse transcription of a self-primed retrotransposon requires an RNA structure similar to the U5-IR stem-loop of retroviruses. Mol. Cell. Biol., 18, 6859-6869.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 6859-6869
-
-
Lin, J.H.1
Levin, H.L.2
-
33
-
-
20444459090
-
Role of integrase in reverse transcription of the Saccharomyces cerevisiae retrotransposon Ty1
-
Wilhelm, M. and Wilhelm, F.X. (2005) Role of integrase in reverse transcription of the Saccharomyces cerevisiae retrotransposon Ty1. Eukaryot. Cell, 4, 1057-1065.
-
(2005)
Eukaryot. Cell
, vol.4
, pp. 1057-1065
-
-
Wilhelm, M.1
Wilhelm, F.X.2
-
34
-
-
33750349866
-
Cooperation between reverse transcriptase and integrase during reverse transcription and formation of the preintegrative complex of Ty1
-
Wilhelm, M. and Wilhelm, F.X. (2006) Cooperation between reverse transcriptase and integrase during reverse transcription and formation of the preintegrative complex of Ty1. Eukaryot. Cell, 5, 1760-1769.
-
(2006)
Eukaryot. Cell
, vol.5
, pp. 1760-1769
-
-
Wilhelm, M.1
Wilhelm, F.X.2
-
35
-
-
0031908703
-
Interactions between Ty1 retrotransposon RNA and the T and D regions of the tRNA(iMet) primer are required for initiation of reverse transcription in vivo
-
Friant, S., Heyman, T., Bystrom, A.S., Wilhelm, M. and Wilhelm, F.X. (1998) Interactions between Ty1 retrotransposon RNA and the T and D regions of the tRNA(iMet) primer are required for initiation of reverse transcription in vivo. Mol. Cell Biol., 18, 799-806.
-
(1998)
Mol. Cell Biol.
, vol.18
, pp. 799-806
-
-
Friant, S.1
Heyman, T.2
Bystrom, A.S.3
Wilhelm, M.4
Wilhelm, F.X.5
-
36
-
-
33947425219
-
Tertiary structure of an RNA pseudoknot is stabilized by "diffuse" Mg2+ ions
-
Soto, A.M., Misra, V. and Draper, D.E. (2007) Tertiary structure of an RNA pseudoknot is stabilized by "diffuse" Mg2+ ions. Biochemistry, 46, 2973-2983.
-
(2007)
Biochemistry
, vol.46
, pp. 2973-2983
-
-
Soto, A.M.1
Misra, V.2
Draper, D.E.3
-
38
-
-
0032578472
-
RNA folding causes secondary structure rearrangement
-
Wu, M. and Tinoco, I. Jr (1998) RNA folding causes secondary structure rearrangement. Proc. Natl Acad. Sci. USA, 95, 11555-11560.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 11555-11560
-
-
Wu, M.1
Tinoco, Jr.I.2
-
39
-
-
78650628290
-
Definition of a high-affinity Gag recognition structure mediating packaging of a retroviral RNA genome
-
Gherghe, C., Lombo, T., Leonard, C.W., Datta, S.A., Bess, J.W. Jr, Gorelick, R.J., Rein, A. and Weeks, K.M. (2010) Definition of a high-affinity Gag recognition structure mediating packaging of a retroviral RNA genome. Proc. Natl Acad. Sci. USA, 107, 19248-19253.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 19248-19253
-
-
Gherghe, C.1
Lombo, T.2
Leonard, C.W.3
Datta, S.A.4
Bess, Jr.J.W.5
Gorelick, R.J.6
Rein, A.7
Weeks, K.M.8
-
40
-
-
0026171924
-
Investigation of zinc-binding affinities of Moloney murine leukemia virus nucleocapsid protein and its related zinc finger and modified peptides
-
Mely, Y., Cornille, F., Fournie-Zaluski, M.C., Darlix, J.L., Roques, B.P. and Gerard, D. (1991) Investigation of zinc-binding affinities of Moloney murine leukemia virus nucleocapsid protein and its related zinc finger and modified peptides. Biopolymers, 31, 899-906.
-
(1991)
Biopolymers
, vol.31
, pp. 899-906
-
-
Mely, Y.1
Cornille, F.2
Fournie-Zaluski, M.C.3
Darlix, J.L.4
Roques, B.P.5
Gerard, D.6
-
41
-
-
0030756546
-
A role for two hairpin structures as a core RNA encapsidation signal in murine leukemia virus virions
-
Mougel, M. and Barklis, E. (1997) A role for two hairpin structures as a core RNA encapsidation signal in murine leukemia virus virions. J. Virol., 71, 8061-8065.
-
(1997)
J. Virol.
, vol.71
, pp. 8061-8065
-
-
Mougel, M.1
Barklis, E.2
-
42
-
-
59749098821
-
Frameshifting RNA pseudoknots: Structure and mechanism
-
Giedroc, D.P. and Cornish, P.V. (2009) Frameshifting RNA pseudoknots: structure and mechanism. Virus Res., 139, 193-208.
-
(2009)
Virus Res.
, vol.139
, pp. 193-208
-
-
Giedroc, D.P.1
Cornish, P.V.2
-
43
-
-
0025303605
-
Ribosomal frameshifting in the yeast retrotransposon Ty: TRNAs induce slippage on a 7 nucleotide minimal site
-
Belcourt, M.F. and Farabaugh, P.J. (1990) Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site. Cell, 62, 339-352.
-
(1990)
Cell
, vol.62
, pp. 339-352
-
-
Belcourt, M.F.1
Farabaugh, P.J.2
-
44
-
-
1842388680
-
Efficient translational frameshifting occurs within a conserved sequence of the overlap between the two genes of a yeast Ty1 transposon
-
Clare, J.J., Belcourt, M. and Farabaugh, P.J. (1988) Efficient translational frameshifting occurs within a conserved sequence of the overlap between the two genes of a yeast Ty1 transposon. Proc. Natl Acad. Sci. USA, 85, 6816-6820.
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 6816-6820
-
-
Clare, J.J.1
Belcourt, M.2
Farabaugh, P.J.3
-
45
-
-
8444229753
-
Strategies for RNA folding and assembly
-
Schroeder, R., Barta, A. and Semrad, K. (2004) Strategies for RNA folding and assembly. Nat. Rev. Mol. Cell Biol., 5, 908-919.
-
(2004)
Nat. Rev. Mol. Cell Biol.
, vol.5
, pp. 908-919
-
-
Schroeder, R.1
Barta, A.2
Semrad, K.3
-
46
-
-
34250871549
-
Ty3 capsid mutations reveal early and late functions of the amino-terminal domain
-
Larsen, L.S.Z., Zhang, M., Beliakova-Bethell, N., Bilanchone, V., Lamsa, A., Nagashima, K., Najdi, R., Kosaka, K., Kovacevic, V., Cheng, J. et al. (2007) Ty3 capsid mutations reveal early and late functions of the amino-terminal domain. J. Virol., 81, 6957-6972.
-
(2007)
J. Virol.
, vol.81
, pp. 6957-6972
-
-
Larsen, L.S.Z.1
Zhang, M.2
Beliakova-Bethell, N.3
Bilanchone, V.4
Lamsa, A.5
Nagashima, K.6
Najdi, R.7
Kosaka, K.8
Kovacevic, V.9
Cheng, J.10
-
47
-
-
40849123031
-
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states
-
Wilkinson, K.A., Gorelick, R.J., Vasa, S.M., Guex, N., Rein, A., Mathews, D.H., Giddings, M.C. and Weeks, K.M. (2008) High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states. PLoS Biol., 6, e96.
-
(2008)
PLoS Biol.
, vol.6
-
-
Wilkinson, K.A.1
Gorelick, R.J.2
Vasa, S.M.3
Guex, N.4
Rein, A.5
Mathews, D.H.6
Giddings, M.C.7
Weeks, K.M.8
-
48
-
-
0022458033
-
Control of Rous sarcoma virus RNA translation and packaging by the 5′ and 3′ untranslated sequences
-
Darlix, J.L. (1986) Control of Rous sarcoma virus RNA translation and packaging by the 5′ and 3′ untranslated sequences. J. Mol. Biol., 189, 421-434.
-
(1986)
J. Mol. Biol.
, vol.189
, pp. 421-434
-
-
Darlix, J.L.1
-
49
-
-
0032581914
-
The native structure of the human immunodeficiency virus type 1 RNA genome is required for the first strand transfer of reverse transcription
-
Berkhout, B., Das, A.T. and van Wamel, J.L. (1998) The native structure of the human immunodeficiency virus type 1 RNA genome is required for the first strand transfer of reverse transcription. Virology, 249, 211-218.
-
(1998)
Virology
, vol.249
, pp. 211-218
-
-
Berkhout, B.1
Das, A.T.2
Van Wamel, J.L.3
-
50
-
-
77952692559
-
Circularization of the HIV-1 genome facilitates strand transfer during reverse transcription
-
Beerens, N. and Kjems, J. (2010) Circularization of the HIV-1 genome facilitates strand transfer during reverse transcription. RNA, 16, 1226-1235.
-
(2010)
RNA
, vol.16
, pp. 1226-1235
-
-
Beerens, N.1
Kjems, J.2
-
51
-
-
0344406983
-
Template dimerization promotes an acceptor invasion-induced transfer mechanism during human immunodeficiency virus type 1 minus-strand synthesis
-
Balakrishnan, M., Roques, B.P., Fay, P.J. and Bambara, R.A. (2003) Template dimerization promotes an acceptor invasion-induced transfer mechanism during human immunodeficiency virus type 1 minus-strand synthesis. J. Virol., 77, 4710-4721.
-
(2003)
J. Virol.
, vol.77
, pp. 4710-4721
-
-
Balakrishnan, M.1
Roques, B.P.2
Fay, P.J.3
Bambara, R.A.4
-
52
-
-
52949152433
-
ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis
-
Vasa, S.M., Guex, N., Wilkinson, K.A., Weeks, K.M. and Giddings, M.C. (2008) ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis. RNA, 14, 1979-1990.
-
(2008)
RNA
, vol.14
, pp. 1979-1990
-
-
Vasa, S.M.1
Guex, N.2
Wilkinson, K.A.3
Weeks, K.M.4
Giddings, M.C.5
-
53
-
-
58549109608
-
Accurate SHAPE-directed RNA structure determination
-
Deigan, K.E., Li, T.W., Mathews, D.H. and Weeks, K.M. (2009) Accurate SHAPE-directed RNA structure determination. Proc Natl Acad. Sci. USA, 106, 97-102.
-
(2009)
Proc Natl Acad. Sci. USA
, vol.106
, pp. 97-102
-
-
Deigan, K.E.1
Li, T.W.2
Mathews, D.H.3
Weeks, K.M.4
-
54
-
-
67649371451
-
Influence of nucleotide identity on ribose 2′-hydroxyl reactivity in RNA
-
Wilkinson, K.A., Vasa, S.M., Deigan, K.E., Mortimer, S.A., Giddings, M.C. and Weeks, K.M. (2009) Influence of nucleotide identity on ribose 2′-hydroxyl reactivity in RNA. RNA, 15, 1314-1321.
-
(2009)
RNA
, vol.15
, pp. 1314-1321
-
-
Wilkinson, K.A.1
Vasa, S.M.2
Deigan, K.E.3
Mortimer, S.A.4
Giddings, M.C.5
Weeks, K.M.6
-
55
-
-
84255189090
-
The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks
-
Butcher, S.E. and Pyle, A.M. (2011) The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks. Acc. Chem. Res., 44, 1302-1311.
-
(2011)
Acc. Chem. Res.
, vol.44
, pp. 1302-1311
-
-
Butcher, S.E.1
Pyle, A.M.2
-
56
-
-
70349238567
-
Tertiary motifs revealed in analyses of higher-order RNA junctions
-
Laing, C., Jung, S., Iqbal, A. and Schlick, T. (2009) Tertiary motifs revealed in analyses of higher-order RNA junctions. J. Mol. Biol., 393, 67-82.
-
(2009)
J. Mol. Biol.
, vol.393
, pp. 67-82
-
-
Laing, C.1
Jung, S.2
Iqbal, A.3
Schlick, T.4
-
57
-
-
67449103067
-
Analysis of four-way junctions in RNA structures
-
Laing, C. and Schlick, T. (2009) Analysis of four-way junctions in RNA structures. J. Mol. Biol., 390, 547-559.
-
(2009)
J. Mol. Biol.
, vol.390
, pp. 547-559
-
-
Laing, C.1
Schlick, T.2
|